Bra035708 (Brassica rapa)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00320 (GATA) IPR000679 Bra035708 T191981_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA11
M01995_2.00 		Arabidopsis thaliana
CAGATCTH
DAGATCTG		 PBM
Weirauch et al.(2014)
pTH7486 		0.856 0.944
GATA11
M06882_2.00 		Arabidopsis thaliana
HYYAGATCYRRWWHH
DDWWYYRGATCTRRD		 Dap-seq
OMalley et al.(2016)
GATA11_col_a 		0.856 0.944
GATA10
M01994_2.00 		Arabidopsis thaliana
CAGATCTA
TAGATCTG		 PBM
Weirauch et al.(2014)
pTH7615 		0.837 0.833
GATA3
M02003_2.00 		Arabidopsis thaliana
NNNNGATBNN
NNVATCNNNN		 PBM
Weirauch et al.(2014)
pTH7657 		0.837 0.778
GATA7
M02004_2.00 		Arabidopsis thaliana
NNNNATNNNN
NNNNATNNNN		 PBM
Weirauch et al.(2014)
pTH7658 		0.832 0.778
GATA8
M02000_2.00 		Arabidopsis thaliana
NNGATYYVN
NBRRATCNN		 PBM
Weirauch et al.(2014)
pTH7665 		0.823 0.806
Q76DY3_TOBAC
M10600_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGP1_01 		0.823 0.806
GATA9
M02002_2.00 		Arabidopsis thaliana
NHAGATCTDNN
NNHAGATCTDN		 PBM
Weirauch et al.(2014)
pTH7378 		0.823 0.778
GATA12
M00863_2.00 		Arabidopsis thaliana
NNNGATBN
NVATCNNN		 PBM
Franco-Zorrilla et al.(2014)
GATA12 		0.823 0.778
GATA12
M06895_2.00 		Arabidopsis thaliana
DWWYYAGATCYRR
YYRGATCTRRWWH		 Dap-seq
OMalley et al.(2016)
GATA12_col_a 		0.823 0.778
GATA12
M06896_2.00 		Arabidopsis thaliana
YRGATCTRRWYYNDN
NHNRRWYYAGATCYR		 Dap-seq
OMalley et al.(2016)
GATA12_colamp_a 		0.823 0.778
GATA4
M00727_2.00 		Arabidopsis thaliana
NNNGATCNNN
NNNGATCNNN		 PBM
Chang et al.(2013)
pTH7196 		0.819 0.778
GATA4
M06891_2.00 		Arabidopsis thaliana
HNNYRGATCYRRWYY
RRWYYRGATCYRNND		 Dap-seq
OMalley et al.(2016)
GATA4_col_a 		0.819 0.778
GATA1
M01998_2.00 		Arabidopsis thaliana
NNNVATBNNN
NNNVATBNNN		 PBM
Weirauch et al.(2014)
pTH8144 		0.819 0.750
GATA6
M01999_2.00 		Arabidopsis thaliana
NVRATVNDNN
NNHNBATYBN		 PBM
Weirauch et al.(2014)
pTH7317 		0.819 0.750
GATA1
M06887_2.00 		Arabidopsis thaliana
RYGRTGRTGRTGRTG
CAYCAYCAYCAYCRY		 Dap-seq
OMalley et al.(2016)
GATA1_col_a 		0.819 0.750
GATA1
M06888_2.00 		Arabidopsis thaliana
HNYAGATCYRRWYB
VRWYYRGATCTRND		 Dap-seq
OMalley et al.(2016)
GATA1_colamp_a 		0.819 0.750
GATA6
M06890_2.00 		Arabidopsis thaliana
YAGATCTARAWNH
DNWTYTAGATCTR		 Dap-seq
OMalley et al.(2016)
GATA6_col200_a 		0.819 0.750
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra035708.1-P GATA 530 565

Links

Other GATA family TFs
Other Brassica rapa TFs

603 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
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GLYMA06G43560 Glycine max GLYMA06G43560 N
GLYMA12G14400 Glycine max GLYMA12G14400 N
GLYMA12G33751 Glycine max GLYMA12G33751 I
GLYMA13G36741 Glycine max GLYMA13G36741 I
LPERR03G10060 Leersia perrieri LPERR03G10060 I
LPERR08G12910 Leersia perrieri LPERR08G12910 I
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Lus10001885.g Linum usitatissimum Lus10001885.g I
LjT46P06.140.nd Lotus japonicus LjT46P06.140.nd N
MTR_2g091190 Medicago truncatula MTR_2g091190 N
MTR_4g079760 Medicago truncatula MTR_4g079760 N
GSMUA_Achr1G21280_001 Musa acuminata GSMUA_Achr1G21280_001 I
OBART03G11320 Oryza barthii OBART03G11320 I
OB03G21490 Oryza brachyantha OB03G21490 I
ORGLA03G0109100 Oryza glaberrima ORGLA03G0109100 I
OGLUM03G11280 Oryza glumaepatula OGLUM03G11280 I
OLONG_004075 Oryza longistaminata OLONG_004075 I
ONIVA03G12280 Oryza nivara ONIVA03G12280 I
ORUFI03G11650 Oryza rufipogon ORUFI03G11650 I
OS03G0260600 Oryza sativa OS03G0260600 I
Pavir.Ib01099 Panicum virgatum Pavir.Ib01099 I
POPTR_0019s11870 Populus trichocarpa POPTR_0019s11870 N
POPTR_0013s12190 Populus trichocarpa POPTR_0013s12190 N
29646.m001078 Ricinus communis 29646.m001078 N
SapurV1A.0596s0110 Salix purpurea SapurV1A.0596s0110 N
SapurV1A.0958s0180 Salix purpurea SapurV1A.0958s0180 N
SapurV1A.2444s0040 Salix purpurea SapurV1A.2444s0040 N
Si039730m.g Setaria italica Si039730m.g I
Sb01g040450 Sorghum bicolor Sb01g040450 I
TCM_001690 Theobroma cacao TCM_001690 N
VIT_12s0028g02350 Vitis vinifera VIT_12s0028g02350 N
GRMZM2G043854 Zea mays GRMZM2G043854 I