fgenesh1_pm.C_scaffold_7002128 (Arabidopsis lyrata)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00320 (GATA) IPR000679 fgenesh1_pm.C_scaffold_7002128 T193285_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA16
M06897_2.00 		Arabidopsis thaliana
ATGATGATGATSATGATGATGATSATG
CATSATCATCATCATSATCATCATCAT		 Dap-seq
OMalley et al.(2016)
GATA16_col_a 		0.828 0.806
GATA15
M01997_2.00 		Arabidopsis thaliana
NNHGATCNN
NNGATCDNN		 PBM
Weirauch et al.(2014)
pTH7662 		0.808 0.806
GATA15
M06886_2.00 		Arabidopsis thaliana
GATGATGATGATGATGATS
SATCATCATCATCATCATC		 Dap-seq
OMalley et al.(2016)
GATA15_col_b 		0.808 0.806
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pm.C_scaffold_7002128 GATA 39 74

Links

Other GATA family TFs
Other Arabidopsis lyrata TFs

112 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMXG00000011185 Astyanax mexicanus ENSAMXG00000011185 N
Myotis_brandtii_Sall1_10024565 Myotis brandtii Myotis_brandtii_Sall1_10024565 N
SALL3 Taeniopygia guttata ENSTGUG00000006541 N
sall3a Tetraodon nigroviridis ENSTNIG00000001257 N
SALL3 Tupaia belangeri ENSTBEG00000008964 N