GCM1 (Choloepus hoffmanni)
GCM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03615 (GCM) IPR003902 ENSCHOG00000003116 T197972_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Gcm1
M00168_2.00 		Mus musculus
NVTRVGGGY
RCCCBYABN		 PBM
Badis et al.(2009)
Gcm1_3732 		0.950 0.950
Gcm1
M02022_2.00 		Rattus norvegicus
NNRTRVGGGY
RCCCBYAYNN		 PBM
Weirauch et al.(2014)
pTH9283 		0.938 0.938
XP_004449939.1
M02027_2.00 		Dasypus novemcinctus
RTRSGGGY
RCCCSYAY		 PBM
Weirauch et al.(2014)
pTH9259 		0.925 0.925
GCM1
M02020_2.00 		Homo sapiens
NVTVNGGGN
NCCCNBABN		 PBM
Weirauch et al.(2014)
pTH7965 		0.900 0.900
GCM1
M03068_2.00 		Homo sapiens
BATGCGGGTR
YACCCGCATV		 SELEX
Jolma et al.(2013)
GCM1_1 		0.900 0.900
GCM1
M03069_2.00 		Homo sapiens
RTRYKGGYRCCMGYAN
NTRCKGGYRCCMRYAY		 SELEX
Jolma et al.(2013)
GCM1_2 		0.900 0.900
GCM1
M03070_2.00 		Homo sapiens
BATGCGGGTRS
SYACCCGCATV		 SELEX
Jolma et al.(2013)
GCM1_3 		0.900 0.900
GCM1
M04883_2.00 		Homo sapiens
RTGSGGGBV
BVCCCSCAY		 SELEX
Yin et al.(2017)
GCM1_eDBD_HT-SELEX 		0.900 0.900
GCM1
M05868_2.00 		Homo sapiens
ATGCGGGYV
BRCCCGCAT		 SMiLE-seq
Isakova et al.(2017)
GCM1 		0.900 0.900
GCM1
M10603_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GCMA_Q4 		0.900 0.900
GCM1
M10604_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GCM_Q2 		0.900 0.900
GCM1
M04884_2.00 		Homo sapiens
ATRNKGGYV
BRCCMNYAT		 SELEX
Yin et al.(2017)
GCM1_eDBD_Methyl-HT-SELEX 		0.900 0.900
GCM1
M02021_2.00 		Meleagris gallopavo
VTVNKGGYNN
NNRCCMNBAB		 PBM
Weirauch et al.(2014)
pTH8653 		0.887 0.887
ENSTRUG00000003586
M02025_2.00 		Takifugu rubripes
NRTRNGGGYN
NRCCCNYAYN		 PBM
Weirauch et al.(2014)
pTH9357 		0.750 0.750
GCM2
M02023_2.00 		Taeniopygia guttata
NRTRHKGGYN
NRCCMDYAYN		 PBM
Weirauch et al.(2014)
pTH9341 		0.738 0.738
gcm2
M02024_2.00 		Tetraodon nigroviridis
ATRCGGGY
RCCCGYAT		 PBM
Weirauch et al.(2014)
pTH9386 		0.738 0.738
GCM2
M03067_2.00 		Homo sapiens
NATGCGGGYD
HRCCCGCATN		 SELEX
Jolma et al.(2013)
GCM2_1 		0.688 0.688
GCM2
M04881_2.00 		Homo sapiens
RTGCGGGYN
NRCCCGCAY		 SELEX
Yin et al.(2017)
GCM2_FL_HT-SELEX 		0.688 0.688
GCM2
M10602_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GCMB_Q2 		0.688 0.688
GCM2
M04882_2.00 		Homo sapiens
ATRHKGGYN
NRCCMDYAT		 SELEX
Yin et al.(2017)
GCM2_FL_Methyl-HT-SELEX 		0.688 0.688
gcm2
M02026_2.00 		Drosophila melanogaster
ATGCGGGY
RCCCGCAT		 PBM
Weirauch et al.(2014)
pTH8361 		0.625 0.625
gcm2
M03767_2.00 		Drosophila melanogaster
NATGCGGGYNNNRCCCGCATN
NATGCGGGYNNNRCCCGCATN		 SELEX
Nitta et al.(2015)
gcm2_1 		0.625 0.625
gcm2
M03768_2.00 		Drosophila melanogaster
BATGCKGGTACCMGCATV
BATGCKGGTACCMGCATV		 SELEX
Nitta et al.(2015)
gcm2_2 		0.625 0.625
For this family, TFs with SR scores > 0.607 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSCHOP00000002765 GCM 30 119

Links

Other GCM family TFs
Other Choloepus hoffmanni TFs

11 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_31528 Aegilops tauschii F775_31528 N
Aquca_005_00119 Aquilegia coerulea Aquca_005_00119 N
Aquca_007_00377 Aquilegia coerulea Aquca_007_00377 N
Aquca_051_00100 Aquilegia coerulea Aquca_051_00100 N
ATBZIP34 Arabidopsis lyrata fgenesh2_kg.4__2390__AT2G42380.2 N
BZIP34 Arabidopsis thaliana AT2G42380 N
BZIP61 Arabidopsis thaliana AT3G58120 N
BRADI2G06790 Brachypodium distachyon BRADI2G06790 N
BRADI3G09340 Brachypodium distachyon BRADI3G09340 N
Bo6g074510 Brassica oleracea Bo6g074510 N
Bo8g092430 Brassica oleracea Bo8g092430 N
Bra003320 Brassica rapa Bra003320 N
PK16223.1 Cannabis sativa PK16223.1 N
evm.TU.supercontig_131.79 Carica papaya evm.TU.supercontig_131.79 N
evm.TU.supercontig_209.8 Carica papaya evm.TU.supercontig_209.8 N
Ca_12857 Cicer arietinum Ca_12857 N
Cla015875 Citrullus lanatus Cla015875 N
Cla023708 Citrullus lanatus Cla023708 N
Ciclev10008720m.g Citrus clementina Ciclev10008720m.g N
orange1.1g037696m.g Citrus sinensis orange1.1g037696m.g N
Cucsa.122790 Cucumis sativus Cucsa.122790 N
Cucsa.148840 Cucumis sativus Cucsa.148840 N
Thhalv10016923m.g Eutrema salsugineum Thhalv10016923m.g N
gene27194-v1.0-hybrid Fragaria vesca gene27194-v1.0-hybrid N
GLYMA13G34770 Glycine max GLYMA13G34770 N
Gorai.002G064900 Gossypium raimondii Gorai.002G064900 N
Gorai.013G172500 Gossypium raimondii Gorai.013G172500 N
MLOC_39203 Hordeum vulgare MLOC_39203 N
MLOC_66252 Hordeum vulgare MLOC_66252 N
MLOC_72368 Hordeum vulgare MLOC_72368 N
LPERR01G06720 Leersia perrieri LPERR01G06720 N
Lus10017656.g Linum usitatissimum Lus10017656.g N
Lus10033630.g Linum usitatissimum Lus10033630.g N
MDP0000133698 Malus domestica MDP0000133698 N
MDP0000555457 Malus domestica MDP0000555457 N
cassava15850.m1 Manihot esculenta cassava15850.m1 N
cassava21652.m1 Manihot esculenta cassava21652.m1 N
MTR_4g079500 Medicago truncatula MTR_4g079500 N
mgf003967m Mimulus guttatus mgf003967m N
GSMUA_Achr6G26930_001 Musa acuminata GSMUA_Achr6G26930_001 N
GSMUA_Achr9G06540_001 Musa acuminata GSMUA_Achr9G06540_001 N
OBART01G07120 Oryza barthii OBART01G07120 N
OBART01G31310 Oryza barthii OBART01G31310 N
OBART02G10550 Oryza barthii OBART02G10550 N
OB01G17130 Oryza brachyantha OB01G17130 N
ORGLA01G0254900 Oryza glaberrima ORGLA01G0254900 N
ORGLA02G0094900 Oryza glaberrima ORGLA02G0094900 N
OGLUM01G35480 Oryza glumaepatula OGLUM01G35480 N
OGLUM02G10470 Oryza glumaepatula OGLUM02G10470 N
BGIOSGA002137 Oryza indica BGIOSGA002137 N
BGIOSGA004481 Oryza indica BGIOSGA004481 N
BGIOSGA007886 Oryza indica BGIOSGA007886 N
OLONG_003093 Oryza longistaminata OLONG_003093 N
OMERI01G28450 Oryza meridionalis OMERI01G28450 N
OMERI02G11410 Oryza meridionalis OMERI02G11410 N
ONIVA01G09160 Oryza nivara ONIVA01G09160 N
ONIVA01G35770 Oryza nivara ONIVA01G35770 N
ONIVA02G11660 Oryza nivara ONIVA02G11660 N
OPUNC01G06850 Oryza punctata OPUNC01G06850 N
OPUNC01G30390 Oryza punctata OPUNC01G30390 N
OPUNC02G09400 Oryza punctata OPUNC02G09400 N
ORUFI01G07680 Oryza rufipogon ORUFI01G07680 N
ORUFI01G34500 Oryza rufipogon ORUFI01G34500 N
ORUFI02G10470 Oryza rufipogon ORUFI02G10470 N
BZIP02 Oryza sativa OS01G0211800 N
BZIP06 Oryza sativa OS01G0756200 N
Pavir.Aa02794 Panicum virgatum Pavir.Aa02794 N
Pavir.Ab01112 Panicum virgatum Pavir.Ab01112 N
Pavir.Ea02752 Panicum virgatum Pavir.Ea02752 N
Pavir.Eb03400 Panicum virgatum Pavir.Eb03400 N
Pavir.J05339 Panicum virgatum Pavir.J05339 N
Pavir.J11397 Panicum virgatum Pavir.J11397 N
estExt_fgenesh1_pg.C_160081 Physcomitrella patens estExt_fgenesh1_pg.C_160081 N
estExt_fgenesh1_pg.C_2820001 Physcomitrella patens estExt_fgenesh1_pg.C_2820001 N
fgenesh1_pg.scaffold_3000202 Physcomitrella patens fgenesh1_pg.scaffold_3000202 N
Pm014253 Prunus mume Pm014253 N
PRUPE_ppa016271mg Prunus persica PRUPE_ppa016271mg N
PRUPE_ppa022385mg Prunus persica PRUPE_ppa022385mg N
SapurV1A.0083s0430 Salix purpurea SapurV1A.0083s0430 N
SapurV1A.0474s0270 Salix purpurea SapurV1A.0474s0270 N
Si002311m.g Setaria italica Si002311m.g N
Si018161m.g Setaria italica Si018161m.g N
Solyc07g053450.2 Solanum lycopersicum Solyc07g053450.2 N
Solyc07g062710.2 Solanum lycopersicum Solyc07g062710.2 N
Solyc12g010800.1 Solanum lycopersicum Solyc12g010800.1 N
PGSC0003DMG400012436 Solanum tuberosum PGSC0003DMG400012436 N
Sb03g002050 Sorghum bicolor Sb03g002050 N
Sb03g034950 Sorghum bicolor Sb03g034950 N
Sb04g008840 Sorghum bicolor Sb04g008840 N
TCM_003607 Theobroma cacao TCM_003607 N
TCM_031686 Theobroma cacao TCM_031686 N
Traes_2AS_6EA1E372F Triticum aestivum Traes_2AS_6EA1E372F N
Traes_2BS_C9A338257 Triticum aestivum Traes_2BS_C9A338257 N
TRAES3BF093300030CFD_g Triticum aestivum TRAES3BF093300030CFD_g N
TRAES3BF117100130CFD_g Triticum aestivum TRAES3BF117100130CFD_g N
Traes_5BL_573ABF1D7 Triticum aestivum Traes_5BL_573ABF1D7 N
Traes_5DL_D30ADBFDE Triticum aestivum Traes_5DL_D30ADBFDE N
VIT_12s0028g02590 Vitis vinifera VIT_12s0028g02590 N
VIT_19s0014g01780 Vitis vinifera VIT_19s0014g01780 N
AC233853.1_FG002 Zea mays AC233853.1_FG002 N
GRMZM2G027976 Zea mays GRMZM2G027976 N
GRMZM2G052102 Zea mays GRMZM2G052102 N
GRMZM2G158313 Zea mays GRMZM2G158313 N