CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Gcm1
(
Rattus norvegicus
)
GCM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03615 (GCM)
IPR003902
ENSRNOG00000007932
T198053_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Predicted to enable several functions, including DNA-binding transcription activator activity, RNA polymerase II-specific; histone deacetylase binding activity; and zinc ion binding activity. Predicted to be involved in several processes, including cell differentiation involved in embryonic placenta development; regulation of cell differentiation involved in embryonic placenta development; and transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including astrocyte fate commitment; branching involved in labyrinthine layer morphogenesis; and positive regulation of syncytium formation by plasma membrane fusion. Predicted to be part of transcription regulator complex. Predicted to be active in nucleus. Orthologous to human GCM1 (glial cells missing transcription factor 1). [provided by Alliance of Genome Resources, Apr 2022]
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Gcm1
M02022_2.00
Rattus norvegicus
NNRTRVGGGY
RCCCBYAYNN
PBM
Weirauch et al.(2014)
pTH9283
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Gcm1
M00168_2.00
Mus musculus
NVTRVGGGY
RCCCBYABN
PBM
Badis et al.(2009)
Gcm1_3732
0.993
0.993
GCM1
M02020_2.00
Homo sapiens
NVTVNGGGN
NCCCNBABN
PBM
Weirauch et al.(2014)
pTH7965
0.928
0.928
GCM1
M03068_2.00
Homo sapiens
BATGCGGGTR
YACCCGCATV
SELEX
Jolma et al.(2013)
GCM1_1
0.928
0.928
GCM1
M03069_2.00
Homo sapiens
RTRYKGGYRCCMGYAN
NTRCKGGYRCCMRYAY
SELEX
Jolma et al.(2013)
GCM1_2
0.928
0.928
GCM1
M03070_2.00
Homo sapiens
BATGCGGGTRS
SYACCCGCATV
SELEX
Jolma et al.(2013)
GCM1_3
0.928
0.928
GCM1
M04883_2.00
Homo sapiens
RTGSGGGBV
BVCCCSCAY
SELEX
Yin et al.(2017)
GCM1_eDBD_HT-SELEX
0.928
0.928
GCM1
M05868_2.00
Homo sapiens
ATGCGGGYV
BRCCCGCAT
SMiLE-seq
Isakova et al.(2017)
GCM1
0.928
0.928
GCM1
M10603_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GCMA_Q4
0.928
0.928
GCM1
M10604_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GCM_Q2
0.928
0.928
GCM1
M04884_2.00
Homo sapiens
ATRNKGGYV
BRCCMNYAT
SELEX
Yin et al.(2017)
GCM1_eDBD_Methyl-HT-SELEX
0.928
0.928
XP_004449939.1
M02027_2.00
Dasypus novemcinctus
RTRSGGGY
RCCCSYAY
PBM
Weirauch et al.(2014)
pTH9259
0.906
0.906
GCM1
M02021_2.00
Meleagris gallopavo
VTVNKGGYNN
NNRCCMNBAB
PBM
Weirauch et al.(2014)
pTH8653
0.884
0.884
GCM2
M02023_2.00
Taeniopygia guttata
NRTRHKGGYN
NRCCMDYAYN
PBM
Weirauch et al.(2014)
pTH9341
0.746
0.746
ENSTRUG00000003586
M02025_2.00
Takifugu rubripes
NRTRNGGGYN
NRCCCNYAYN
PBM
Weirauch et al.(2014)
pTH9357
0.717
0.717
GCM2
M03067_2.00
Homo sapiens
NATGCGGGYD
HRCCCGCATN
SELEX
Jolma et al.(2013)
GCM2_1
0.710
0.710
GCM2
M04881_2.00
Homo sapiens
RTGCGGGYN
NRCCCGCAY
SELEX
Yin et al.(2017)
GCM2_FL_HT-SELEX
0.710
0.710
GCM2
M10602_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GCMB_Q2
0.710
0.710
GCM2
M04882_2.00
Homo sapiens
ATRHKGGYN
NRCCMDYAT
SELEX
Yin et al.(2017)
GCM2_FL_Methyl-HT-SELEX
0.710
0.710
gcm2
M02024_2.00
Tetraodon nigroviridis
ATRCGGGY
RCCCGYAT
PBM
Weirauch et al.(2014)
pTH9386
0.703
0.703
gcm2
M02026_2.00
Drosophila melanogaster
ATGCGGGY
RCCCGCAT
PBM
Weirauch et al.(2014)
pTH8361
0.616
0.616
gcm2
M03767_2.00
Drosophila melanogaster
NATGCGGGYNNNRCCCGCATN
NATGCGGGYNNNRCCCGCATN
SELEX
Nitta et al.(2015)
gcm2_1
0.616
0.616
gcm2
M03768_2.00
Drosophila melanogaster
BATGCKGGTACCMGCATV
BATGCKGGTACCMGCATV
SELEX
Nitta et al.(2015)
gcm2_2
0.616
0.616
For this family, TFs with SR scores >
0.607
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M02022_2.00
GCM
30
167
TDWFQEWPDSYVKHIYSSDDRSAQRHLSSWAMRNTNNHNSRILKKSCLGVVVCSRDCSTEEGRKIYLRPAICDKARQKQQRKSCPNCNGPLKLIPCRGHGGFPVTNFWRHDGRFIFFQSKGEHDHPRPETKLEAEARR
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSRNOP00000010583
GCM
30
167
TDWFQEWPDSYVKHIYSSDDRSAQRHLSSWAMRNTNNHNSRILKKSCLGVVVCSRDCSTEEGRKIYLRPAICDKARQKQQRKSCPNCNGPLKLIPCRGHGGFPVTNFWRHDGRFIFFQSKGEHDHPRPETKLEAEARR
Links
Other
GCM
family TFs
Other
Rattus norvegicus
TFs
176 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Gcm1
Mus musculus
ENSMUSG00000023333
D
0.993
ENSMEUG00000004103
Macropus eugenii
ENSMEUG00000004103
I
0.964
GCM1
Monodelphis domestica
ENSMODG00000018803
I
0.957
ENSSHAG00000015905
Sarcophilus harrisii
ENSSHAG00000015905
I
0.957
GCM1
Oryctolagus cuniculus
ENSOCUG00000009246
I
0.953
ENSMPUG00000008870
Mustela putorius furo
ENSMPUG00000008870
I
0.949
GCM1
Felis catus
ENSFCAG00000009490
I
0.949
GCM1
Canis familiaris
ENSCAFG00000002273
I
0.949
ENSCPOG00000006856
Cavia porcellus
ENSCPOG00000006856
I
0.949
GCM1
Equus caballus
ENSECAG00000014228
I
0.942
ENSAMEG00000005755
Ailuropoda melanoleuca
ENSAMEG00000005755
I
0.942
Gcm1
Dipodomys ordii
ENSDORG00000003627
I
0.935
GCM1
Loxodonta africana
ENSLAFG00000012093
I
0.935
GCM1
Homo sapiens
ENSG00000137270
D
0.928
GCM1
Gorilla gorilla
ENSGGOG00000006527
I
0.928
GCM1
Callithrix jacchus
ENSCJAG00000011189
I
0.928
ENSOARG00000015312
Ovis aries
ENSOARG00000015312
I
0.928
ENSCSAG00000013148
Chlorocebus sabaeus
ENSCSAG00000013148
I
0.928
GCM1
Pteropus vampyrus
ENSPVAG00000013341
I
0.928
GCM1
Pan troglodytes
ENSPTRG00000018288
I
0.928
GCM1
Macaca mulatta
ENSMMUG00000022083
I
0.928
ENSP00000259803
Macaca fascicularis
ENSP00000259803
I
0.928
ENSPPYG00000016719
Pongo abelii
ENSPPYG00000016719
I
0.928
GCM1
Bos taurus
ENSBTAG00000008148
I
0.928
ENSBTAP00000010709-D1
Bos grunniens
ENSBTAP00000010709-D1
I
0.928
ENSNLEG00000003544
Nomascus leucogenys
ENSNLEG00000003544
I
0.928
ENSSSCG00000002630
Sus scrofa
ENSSSCG00000002630
I
0.920
Myotis_brandtii_Gcm1_10005135
Myotis brandtii
Myotis_brandtii_Gcm1_10005135
I
0.920
GCM1
Myotis lucifugus
ENSMLUG00000002762
I
0.920
GCM1
Vicugna pacos
ENSVPAG00000006379
I
0.913
ENSSTOG00000022342
Ictidomys tridecemlineatus
ENSSTOG00000022342
I
0.913
GCM1
Tursiops truncatus
ENSTTRG00000015250
I
0.906
ENSMICG00000002274
Microcebus murinus
ENSMICG00000002274
I
0.906
XP_004449939.1
Dasypus novemcinctus
XP_004449939.1
D
0.906
ENSPSIG00000013518
Pelodiscus sinensis
ENSPSIG00000013518
I
0.906
GCM1
Dasypus novemcinctus
ENSDNOG00000016682
I
0.906
GCM1
Otolemur garnettii
ENSOGAG00000007879
I
0.891
ENSAPLG00000004160
Anas platyrhynchos
ENSAPLG00000004160
I
0.884
ENSFALG00000001854
Ficedula albicollis
ENSFALG00000001854
I
0.884
GCM1
Meleagris gallopavo
ENSMGAG00000013927
D
0.884
Aan_R001196
Calypte anna
Aan_R001196
I
0.884
ENSTSYG00000000507
Tarsius syrichta
ENSTSYG00000000507
I
0.877
GCM1
Gallus gallus
ENSGALG00000016316
I
0.877
Pvit_03812
Pogona vitticeps
Pvit_03812
I
0.877
Gfo_R013721
Geospiza fortis
Gfo_R013721
I
0.870
ENSTGUG00000012867
Taeniopygia guttata
ENSTGUG00000012867
I
0.870
Afo_R000272
Aptenodytes forsteri
Afo_R000272
I
0.862
Tal_R009935
Tyto alba
Tal_R009935
I
0.862
Brh_R000788
Buceros rhinoceros
Brh_R000788
I
0.862
gcm1.S
Xenopus laevis
XB-GENE-6252686
I
0.819
ENSSTOG00000014763
Ictidomys tridecemlineatus
ENSSTOG00000014763
I
0.812
ENSETEG00000005181
Echinops telfairi
ENSETEG00000005181
I
0.790
GCM1
Ochotona princeps
ENSOPRG00000003290
I
0.783
ENSLACG00000003372
Latimeria chalumnae
ENSLACG00000003372
I
0.775
Alligator_sinensis_CCG000160.1
Alligator sinensis
Alligator_sinensis_CCG000160.1
I
0.768
gcm2
Danio rerio
ENSDARG00000045413
I
0.754
Brh_R007088
Buceros rhinoceros
Brh_R007088
I
0.754
ENSAPLG00000002817
Anas platyrhynchos
ENSAPLG00000002817
I
0.746
ENSLOCG00000016883
Lepisosteus oculatus
ENSLOCG00000016883
I
0.746
Gfo_R006501
Geospiza fortis
Gfo_R006501
I
0.746
Afo_R013226
Aptenodytes forsteri
Afo_R013226
I
0.746
Aan_R001550
Calypte anna
Aan_R001550
I
0.746
ENSFALG00000013344
Ficedula albicollis
ENSFALG00000013344
I
0.746
GCM2
Taeniopygia guttata
ENSTGUG00000005756
D
0.746
ENSACAG00000008561
Anolis carolinensis
ENSACAG00000008561
I
0.739
GCM2
Gallus gallus
ENSGALG00000012768
I
0.739
GCM2
Meleagris gallopavo
ENSMGAG00000003533
I
0.739
GCM2
Anolis carolinensis
ENSACAG00000008677
I
0.732
Alligator_sinensis_CCG008975.1
Alligator sinensis
Alligator_sinensis_CCG008975.1
I
0.732
ENSONIG00000009885
Oreochromis niloticus
ENSONIG00000009885
I
0.725
ENSXMAG00000002726
Xiphophorus maculatus
ENSXMAG00000002726
I
0.725
gcm2.S
Xenopus laevis
XB-GENE-866131
I
0.725
gcm2
Xenopus tropicalis
XB-GENE-492156
I
0.725
ENSPMAG00000009211
Petromyzon marinus
ENSPMAG00000009211
I
0.725
ENSPFOG00000008781
Poecilia formosa
ENSPFOG00000008781
I
0.725
ENSPSIG00000004698
Pelodiscus sinensis
ENSPSIG00000004698
I
0.725
ENSLACG00000009363
Latimeria chalumnae
ENSLACG00000009363
I
0.725
ENSMICG00000004238
Microcebus murinus
ENSMICG00000004238
I
0.717
GCM2
Bos taurus
ENSBTAG00000018787
I
0.717
ENSTRUG00000003586
Takifugu rubripes
ENSTRUG00000003586
D
0.717
ENSAMXG00000006073
Astyanax mexicanus
ENSAMXG00000006073
I
0.717
ENSP00000368805-D1
Bos grunniens
ENSP00000368805-D1
I
0.717
Pvit_11235
Pogona vitticeps
Pvit_11235
I
0.717
gcm2
Oryzias latipes
ENSORLG00000019715
I
0.717
ENSOARG00000015521
Ovis aries
ENSOARG00000015521
I
0.717
ENSPANG00000026314
Papio anubis
ENSPANG00000026314
I
0.717
GCM2
Tursiops truncatus
ENSTTRG00000003674
I
0.710
ENSTSYG00000006813
Tarsius syrichta
ENSTSYG00000006813
I
0.710
GCM2
Gorilla gorilla
ENSGGOG00000023360
I
0.710
gcm2
Gasterosteus aculeatus
ENSGACG00000001157
I
0.710
GCM2
Canis familiaris
ENSCAFG00000009747
I
0.710
Cmyd_10006831
Chelonia mydas
Cmyd_10006831
I
0.710
ENSP00000368805
Macaca fascicularis
ENSP00000368805
I
0.710
GCM2
Tupaia belangeri
ENSTBEG00000006181
I
0.710
GCM2
Callithrix jacchus
ENSCJAG00000019182
I
0.710
ENSCSAG00000007467
Chlorocebus sabaeus
ENSCSAG00000007467
I
0.710
GCM2
Cavia porcellus
ENSCPOG00000011254
I
0.710
GCM2
Felis catus
ENSFCAG00000001608
I
0.710
GCM2
Homo sapiens
ENSG00000124827
D
0.710
GCM2
Monodelphis domestica
ENSMODG00000010371
I
0.710
GCM2
Macaca mulatta
ENSMMUG00000007719
I
0.710
ENSNLEG00000000645
Nomascus leucogenys
ENSNLEG00000000645
I
0.710
ENSPPYG00000016228
Pongo abelii
ENSPPYG00000016228
I
0.710
ENSMPUG00000000633
Mustela putorius furo
ENSMPUG00000000633
I
0.710
GCM2
Pan troglodytes
ENSPTRG00000017724
I
0.710
ENSSHAG00000010590
Sarcophilus harrisii
ENSSHAG00000010590
I
0.710
GCM2
Oryctolagus cuniculus
ENSOCUG00000017698
I
0.710
ENSLOCG00000013145
Lepisosteus oculatus
ENSLOCG00000013145
I
0.710
gcm2
Tetraodon nigroviridis
ENSTNIG00000005042
D
0.703
GCM2
Ornithorhynchus anatinus
ENSOANG00000007191
I
0.703
ENSGMOG00000012709
Gadus morhua
ENSGMOG00000012709
I
0.703
Gcm2
Mus musculus
ENSMUSG00000021362
I
0.703
GCM2
Choloepus hoffmanni
ENSCHOG00000011562
I
0.703
GCM2
Ochotona princeps
ENSOPRG00000012641
I
0.703
ENSAMEG00000002669
Ailuropoda melanoleuca
ENSAMEG00000002669
I
0.703
GCM2
Equus caballus
ENSECAG00000017632
I
0.703
GCM2
Vicugna pacos
ENSVPAG00000003006
I
0.703
GCM2
Otolemur garnettii
ENSOGAG00000012176
I
0.696
Gcm2
Rattus norvegicus
ENSRNOG00000015008
I
0.696
GCM2
Dasypus novemcinctus
ENSDNOG00000003701
I
0.696
ENSSTOG00000009563
Ictidomys tridecemlineatus
ENSSTOG00000009563
I
0.688
GCM2
Myotis lucifugus
ENSMLUG00000004637
I
0.688
GCM1
Erinaceus europaeus
ENSEEUG00000013606
I
0.681
GCM2
Pteropus vampyrus
ENSPVAG00000004876
I
0.681
GCM2
Loxodonta africana
ENSLAFG00000007475
I
0.681
GCM2
Procavia capensis
ENSPCAG00000011887
I
0.681
tetur09g06060
Tetranychus urticae
tetur09g06060
I
0.645
AAEL000623
Aedes aegypti
AAEL000623
I
0.645
CGI_10019940
Crassostrea gigas
CGI_10019940
I
0.645
AFUN009837
Anopheles funestus
AFUN009837
I
0.638
CapteG133139
Capitella teleta
CapteG133139
I
0.630
ASTEI01672
Anopheles stephensi
ASTEI01672
I
0.630
AGAP007783
Anopheles gambiae
AGAP007783
I
0.630
AEPI007160
Anopheles epiroticus
AEPI007160
I
0.630
AMAM003661
Anopheles maculatus
AMAM003661
I
0.630
AMIN006368
Anopheles minimus
AMIN006368
I
0.630
AQUA003642
Anopheles quadriannulatus
AQUA003642
I
0.630
fgenesh2_pg.scaffold_122000051
Branchiostoma floridae
fgenesh2_pg.scaffold_122000051
I
0.630
ACUA009622
Anopheles culicifacies
ACUA009622
I
0.630
Sakowv30018670m.g
Saccoglossus kowalevskii
Sakowv30018670m.g
I
0.630
Ocbimv22027544m.g
Octopus bimaculoides
Ocbimv22027544m.g
I
0.630
ACHR001414
Anopheles christyi
ACHR001414
I
0.630
Ogr12931
Ophisaurus gracilis
Ogr12931
I
0.623
LDEC012509
Leptinotarsa decemlineata
LDEC012509
I
0.623
AFAF005680
Anopheles farauti
AFAF005680
I
0.623
ADIR000711
Anopheles dirus
ADIR000711
I
0.623
AARA011980
Anopheles arabiensis
AARA011980
I
0.623
BGIBMGA006182
Bombyx mori
BGIBMGA006182
I
0.623
MCINX011946
Melitaea cinxia
MCINX011946
I
0.623
CpipJ_CPIJ006640
Culex pipiens
CpipJ_CPIJ006640
I
0.623
GE18856
Drosophila yakuba
FBgn0236239
I
0.623
CPIJ006640
Culex quinquefasciatus
CPIJ006640
I
0.623
TC014730
Tribolium castaneum
TC014730
I
0.623
DAPPUDRAFT_26189
Daphnia pulex
DAPPUDRAFT_26189
I
0.623
HMEL005671
Heliconius melpomene
HMEL005671
I
0.623
YQE_03062
Dendroctonus ponderosae
YQE_03062
I
0.623
GG10041
Drosophila erecta
FBgn0102353
I
0.616
GM17569
Drosophila sechellia
FBgn0172477
I
0.616
GF22779
Drosophila ananassae
FBgn0099773
I
0.616
ASIS002985
Anopheles sinensis
ASIS002985
I
0.616
PPAI003635
Phlebotomus papatasi
PPAI003635
I
0.616
BGLB002570
Biomphalaria glabrata
BGLB002570
I
0.616
ENSTRUG00000001670
Takifugu rubripes
ENSTRUG00000001670
I
0.616
gcm2
Drosophila melanogaster
FBgn0019809
D
0.616
AATE008476
Anopheles atroparvus
AATE008476
I
0.616
GB45031
Apis mellifera
GB45031
I
0.616
AALB008013
Anopheles albimanus
AALB008013
I
0.616
ACEP23384
Atta cephalotes
ACEP23384
I
0.616
KGM_05743
Danaus plexippus
KGM_05743
I
0.614
SINV21711
Solenopsis invicta
SINV21711
I
0.609
Cflo_04549--XP_393815.2_APIME
Camponotus floridanus
Cflo_04549--XP_393815.2_APIME
I
0.609
CLEC013329
Cimex lectularius
CLEC013329
I
0.609
L798_07938
Zootermopsis nevadensis
L798_07938
I
0.609
GF21907
Drosophila ananassae
FBgn0098907
I
0.609
ISCW022914
Ixodes scapularis
ISCW022914
I
0.609
LotgiG112320
Lottia gigantea
LotgiG112320
I
0.609