DAPPUDRAFT_26189 (Daphnia pulex)
GCM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03615 (GCM) IPR003902 DAPPUDRAFT_26189 T197960_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
gcm
M03764_2.00 		Drosophila melanogaster
HATGCGGGYVVBRCCCGCATV
BATGCGGGYVBBRCCCGCATD		 SELEX
Nitta et al.(2015)
gcm_1 		0.729 0.729
gcm
M03765_2.00 		Drosophila melanogaster
VATGCKGGYRCCMGCATV
BATGCKGGYRCCMGCATB		 SELEX
Nitta et al.(2015)
gcm_2 		0.729 0.729
gcm
M03766_2.00 		Drosophila melanogaster
YATGCGGGTACCAGCATV
BATGCTGGTACCCGCATR		 SELEX
Nitta et al.(2015)
gcm_3 		0.729 0.729
gcm
M10605_2.00 		Drosophila melanogaster
NDNATGCGGGYNB
VNRCCCGCATNHN		 Transfac
Matys et al.(2006)
I$GCM_01 		0.729 0.729
gcm2
M02026_2.00 		Drosophila melanogaster
ATGCGGGY
RCCCGCAT		 PBM
Weirauch et al.(2014)
pTH8361 		0.664 0.664
gcm2
M03767_2.00 		Drosophila melanogaster
NATGCGGGYNNNRCCCGCATN
NATGCGGGYNNNRCCCGCATN		 SELEX
Nitta et al.(2015)
gcm2_1 		0.664 0.664
gcm2
M03768_2.00 		Drosophila melanogaster
BATGCKGGTACCMGCATV
BATGCKGGTACCMGCATV		 SELEX
Nitta et al.(2015)
gcm2_2 		0.664 0.664
GCM2
M02023_2.00 		Taeniopygia guttata
NRTRHKGGYN
NRCCMDYAYN		 PBM
Weirauch et al.(2014)
pTH9341 		0.650 0.650
ENSTRUG00000003586
M02025_2.00 		Takifugu rubripes
NRTRNGGGYN
NRCCCNYAYN		 PBM
Weirauch et al.(2014)
pTH9357 		0.636 0.636
GCM2
M03067_2.00 		Homo sapiens
NATGCGGGYD
HRCCCGCATN		 SELEX
Jolma et al.(2013)
GCM2_1 		0.636 0.636
GCM2
M04881_2.00 		Homo sapiens
RTGCGGGYN
NRCCCGCAY		 SELEX
Yin et al.(2017)
GCM2_FL_HT-SELEX 		0.636 0.636
GCM2
M10602_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GCMB_Q2 		0.636 0.636
GCM2
M04882_2.00 		Homo sapiens
ATRHKGGYN
NRCCMDYAT		 SELEX
Yin et al.(2017)
GCM2_FL_Methyl-HT-SELEX 		0.636 0.636
gcm2
M02024_2.00 		Tetraodon nigroviridis
ATRCGGGY
RCCCGYAT		 PBM
Weirauch et al.(2014)
pTH9386 		0.621 0.621
Gcm1
M00168_2.00 		Mus musculus
NVTRVGGGY
RCCCBYABN		 PBM
Badis et al.(2009)
Gcm1_3732 		0.614 0.614
Gcm1
M02022_2.00 		Rattus norvegicus
NNRTRVGGGY
RCCCBYAYNN		 PBM
Weirauch et al.(2014)
pTH9283 		0.614 0.614
For this family, TFs with SR scores > 0.607 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EFX88535 GCM 15 154

Links

Other GCM family TFs
Other Daphnia pulex TFs

192 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SMAR010130 Strigamia maritima SMAR010130 I 0.864
YQE_03062 Dendroctonus ponderosae YQE_03062 I 0.829
ACEP23384 Atta cephalotes ACEP23384 I 0.821
LDEC012509 Leptinotarsa decemlineata LDEC012509 I 0.821
GB45031 Apis mellifera GB45031 I 0.821
CLEC013329 Cimex lectularius CLEC013329 I 0.814
Hsal_09608--XP_393815.2_APIME Harpegnathos saltator Hsal_09608--XP_393815.2_APIME I 0.814
SINV21711 Solenopsis invicta SINV21711 I 0.814
TC014730 Tribolium castaneum TC014730 I 0.807
ISCW022914 Ixodes scapularis ISCW022914 I 0.807
Cflo_04549--XP_393815.2_APIME Camponotus floridanus Cflo_04549--XP_393815.2_APIME I 0.800
L798_07938 Zootermopsis nevadensis L798_07938 I 0.800
NV17454 Nasonia vitripennis NV17454 I 0.800
MCINX011946 Melitaea cinxia MCINX011946 I 0.793
KGM_05743 Danaus plexippus KGM_05743 I 0.793
RPRC001299 Rhodnius prolixus RPRC001299 I 0.793
HMEL005671 Heliconius melpomene HMEL005671 I 0.793
BGIBMGA006182 Bombyx mori BGIBMGA006182 I 0.793
ACYPI34548 Acyrthosiphon pisum ACYPI34548 I 0.786
PHUM436840 Pediculus humanus PHUM436840 I 0.779
AFAF005680 Anopheles farauti AFAF005680 I 0.779
ACUA009622 Anopheles culicifacies ACUA009622 I 0.771
ADIR000711 Anopheles dirus ADIR000711 I 0.771
tetur09g06060 Tetranychus urticae tetur09g06060 I 0.771
ASIS002985 Anopheles sinensis ASIS002985 I 0.771
PPAI003635 Phlebotomus papatasi PPAI003635 I 0.771
AFUN009837 Anopheles funestus AFUN009837 I 0.764
AMAM003661 Anopheles maculatus AMAM003661 I 0.764
ACHR001414 Anopheles christyi ACHR001414 I 0.764
AQUA003642 Anopheles quadriannulatus AQUA003642 I 0.764
AGAP007783 Anopheles gambiae AGAP007783 I 0.764
AMIN006368 Anopheles minimus AMIN006368 I 0.764
ASTEI01672 Anopheles stephensi ASTEI01672 I 0.764
AATE008476 Anopheles atroparvus AATE008476 I 0.757
AARA011980 Anopheles arabiensis AARA011980 I 0.757
AEPI007160 Anopheles epiroticus AEPI007160 I 0.757
AMEC020313 Anopheles melas AMEC020313 I 0.757
ACOM031025 Anopheles coluzzii ACOM031025 I 0.747
AMEM005966 Anopheles merus AMEM005966 I 0.747
ADAC002327 Anopheles darlingi ADAC002327 I 0.743
AALB008013 Anopheles albimanus AALB008013 I 0.743
CPIJ006640 Culex quinquefasciatus CPIJ006640 I 0.736
CpipJ_CPIJ006640 Culex pipiens CpipJ_CPIJ006640 I 0.736
CapteG133139 Capitella teleta CapteG133139 I 0.735
GE10457 Drosophila yakuba FBgn0228318 I 0.729
GA11505 Drosophila pseudoobscura FBgn0071556 I 0.729
GM12386 Drosophila sechellia FBgn0167323 I 0.729
GL19218 Drosophila persimilis FBgn0156817 I 0.729
AAEL000623 Aedes aegypti AAEL000623 I 0.729
gcm Drosophila melanogaster FBgn0014179 D 0.729
GG24019 Drosophila erecta FBgn0116158 I 0.729
AALB008012 Anopheles albimanus AALB008012 I 0.721
MDOA004732 Musca domestica MDOA004732 I 0.721
Ocbimv22027544m.g Octopus bimaculoides Ocbimv22027544m.g I 0.714
CpipJ_CPIJ006639 Culex pipiens CpipJ_CPIJ006639 I 0.714
AAEL000631 Aedes aegypti AAEL000631 I 0.714
GF21907 Drosophila ananassae FBgn0098907 I 0.714
CPIJ006639 Culex quinquefasciatus CPIJ006639 I 0.714
AATE020589 Anopheles atroparvus AATE020589 I 0.714
GH11056 Drosophila grimshawi FBgn0118537 I 0.714
ASIS021139 Anopheles sinensis ASIS021139 I 0.714
GJ17916 Drosophila virilis FBgn0205084 I 0.707
GI17574 Drosophila mojavensis FBgn0140318 I 0.707
AMAM005757 Anopheles maculatus AMAM005757 I 0.706
ACOM031032 Anopheles coluzzii ACOM031032 I 0.700
AGAP007782 Anopheles gambiae AGAP007782 I 0.700
AMEM008520 Anopheles merus AMEM008520 I 0.700
AQUA003641 Anopheles quadriannulatus AQUA003641 I 0.700
AEPI007161 Anopheles epiroticus AEPI007161 I 0.700
GK23810 Drosophila willistoni FBgn0225772 I 0.700
AARA011979 Anopheles arabiensis AARA011979 I 0.700
ADIR000710 Anopheles dirus ADIR000710 I 0.693
AFAF000663 Anopheles farauti AFAF000663 I 0.693
GD22349 Drosophila simulans FBgn0193756 I 0.693
CGI_10019940 Crassostrea gigas CGI_10019940 I 0.693
ENSPSIG00000004698 Pelodiscus sinensis ENSPSIG00000004698 I 0.692
AFUN009836 Anopheles funestus AFUN009836 I 0.686
ACUA018162 Anopheles culicifacies ACUA018162 I 0.686
AMIN006367 Anopheles minimus AMIN006367 I 0.686
ASTEI01673 Anopheles stephensi ASTEI01673 I 0.686
ACHR004082 Anopheles christyi ACHR004082 I 0.686
ENSTRUG00000001670 Takifugu rubripes ENSTRUG00000001670 I 0.681
LCUP008083 Lucilia cuprina LCUP008083 I 0.679
Sakowv30018670m.g Saccoglossus kowalevskii Sakowv30018670m.g I 0.679
HHAL003300-PA Halyomorpha halys HHAL003300-PA N 0.679
gw.943.3.1 Branchiostoma floridae gw.943.3.1 I 0.678
ENSACAG00000008561 Anolis carolinensis ENSACAG00000008561 I 0.678
BGLB002570 Biomphalaria glabrata BGLB002570 I 0.671
MDOA003644 Musca domestica MDOA003644 I 0.671
LotgiG112320 Lottia gigantea LotgiG112320 I 0.671
GJ18313 Drosophila virilis FBgn0205472 I 0.671
GI11073 Drosophila mojavensis FBgn0133835 I 0.671
GCM2 Echinops telfairi ENSETEG00000012473 I 0.669
TRE_0000926501 Trichobilharzia regenti TRE_0000926501 N 0.667
ENSAMEG00000002669 Ailuropoda melanoleuca ENSAMEG00000002669 I 0.667
GCM2 Ochotona princeps ENSOPRG00000012641 I 0.667
GCM2 Procavia capensis ENSPCAG00000011887 I 0.667
GCM2 Monodelphis domestica ENSMODG00000010371 I 0.667
gcm2 Danio rerio ENSDARG00000045413 I 0.667
GE18856 Drosophila yakuba FBgn0236239 I 0.664
GG10041 Drosophila erecta FBgn0102353 I 0.664
gcm2 Drosophila melanogaster FBgn0019809 D 0.664
GH10675 Drosophila grimshawi FBgn0118156 I 0.664
GM17569 Drosophila sechellia FBgn0172477 I 0.664
GF22779 Drosophila ananassae FBgn0099773 I 0.664
Brh_R007088 Buceros rhinoceros Brh_R007088 I 0.659
Afo_R013226 Aptenodytes forsteri Afo_R013226 I 0.659
Cmyd_10006831 Chelonia mydas Cmyd_10006831 I 0.659
GCM2 Choloepus hoffmanni ENSCHOG00000011562 I 0.659
ENSFALG00000013344 Ficedula albicollis ENSFALG00000013344 I 0.659
ENSAPLG00000002817 Anas platyrhynchos ENSAPLG00000002817 I 0.659
GCM2 Canis familiaris ENSCAFG00000009747 I 0.659
ENSP00000368805-D1 Bos grunniens ENSP00000368805-D1 I 0.659
Gfo_R006501 Geospiza fortis Gfo_R006501 I 0.659
GCM2 Taeniopygia guttata ENSTGUG00000005756 D 0.659
ENSSHAG00000010590 Sarcophilus harrisii ENSSHAG00000010590 I 0.659
GA17734 Drosophila pseudoobscura FBgn0077744 I 0.657
GCM2 Loxodonta africana ENSLAFG00000007475 I 0.657
GL18919 Drosophila persimilis FBgn0156520 I 0.657
GCM1 Oryctolagus cuniculus ENSOCUG00000009246 I 0.654
ENSMPUG00000000633 Mustela putorius furo ENSMPUG00000000633 I 0.652
ENSONIG00000009885 Oreochromis niloticus ENSONIG00000009885 I 0.652
ENSGMOG00000012709 Gadus morhua ENSGMOG00000012709 I 0.652
GCM2 Tursiops truncatus ENSTTRG00000003674 I 0.652
ENSOARG00000015521 Ovis aries ENSOARG00000015521 I 0.652
GCM2 Gallus gallus ENSGALG00000012768 I 0.652
ENSLOCG00000013145 Lepisosteus oculatus ENSLOCG00000013145 I 0.652
GCM2 Vicugna pacos ENSVPAG00000003006 I 0.652
GCM2 Bos taurus ENSBTAG00000018787 I 0.652
GCM2 Dasypus novemcinctus ENSDNOG00000003701 I 0.652
ENSPFOG00000008781 Poecilia formosa ENSPFOG00000008781 I 0.652
gcm2 Xenopus tropicalis XB-GENE-492156 I 0.652
ENSXMAG00000002726 Xiphophorus maculatus ENSXMAG00000002726 I 0.652
GCM2 Myotis lucifugus ENSMLUG00000004637 I 0.652
Aan_R001550 Calypte anna Aan_R001550 I 0.652
fgenesh2_pg.scaffold_122000051 Branchiostoma floridae fgenesh2_pg.scaffold_122000051 I 0.650
GCM2 Equus caballus ENSECAG00000017632 I 0.650
GK23867 Drosophila willistoni FBgn0225829 I 0.650
GCM2 Felis catus ENSFCAG00000001608 I 0.650
gcm2.S Xenopus laevis XB-GENE-866131 I 0.645
GCM2 Meleagris gallopavo ENSMGAG00000003533 I 0.645
GCM2 Macaca mulatta ENSMMUG00000007719 I 0.645
ENSNLEG00000000645 Nomascus leucogenys ENSNLEG00000000645 I 0.645
GCM2 Homo sapiens ENSG00000124827 D 0.645
ENSPPYG00000016228 Pongo abelii ENSPPYG00000016228 I 0.645
ENSCSAG00000007467 Chlorocebus sabaeus ENSCSAG00000007467 I 0.645
GCM2 Pan troglodytes ENSPTRG00000017724 I 0.645
ENSPANG00000026314 Papio anubis ENSPANG00000026314 I 0.645
Alligator_sinensis_CCG008975.1 Alligator sinensis Alligator_sinensis_CCG008975.1 I 0.645
gcm2 Gasterosteus aculeatus ENSGACG00000001157 I 0.645
ENSP00000368805 Macaca fascicularis ENSP00000368805 I 0.645
GCM2 Anolis carolinensis ENSACAG00000008677 I 0.645
GCM2 Gorilla gorilla ENSGGOG00000023360 I 0.645
GCM2 Ornithorhynchus anatinus ENSOANG00000007191 I 0.643
GCM2 Oryctolagus cuniculus ENSOCUG00000017698 I 0.643
gw.285.88.1 Branchiostoma floridae gw.285.88.1 I 0.642
Pvit_11235 Pogona vitticeps Pvit_11235 I 0.638
Gcm2 Rattus norvegicus ENSRNOG00000015008 I 0.638
GCM2 Tupaia belangeri ENSTBEG00000006181 I 0.638
Pvit_03812 Pogona vitticeps Pvit_03812 I 0.638
GCM2 Cavia porcellus ENSCPOG00000011254 I 0.638
Gcm2 Mus musculus ENSMUSG00000021362 I 0.638
ENSMICG00000004238 Microcebus murinus ENSMICG00000004238 I 0.638
GCM2 Callithrix jacchus ENSCJAG00000019182 I 0.636
ENSTRUG00000003586 Takifugu rubripes ENSTRUG00000003586 D 0.636
gcm2 Oryzias latipes ENSORLG00000019715 I 0.630
ENSSTOG00000009563 Ictidomys tridecemlineatus ENSSTOG00000009563 I 0.630
gcm2 Tetraodon nigroviridis ENSTNIG00000005042 D 0.630
ENSLACG00000009363 Latimeria chalumnae ENSLACG00000009363 I 0.630
ENSPSIG00000013518 Pelodiscus sinensis ENSPSIG00000013518 I 0.630
ENSAMXG00000006073 Astyanax mexicanus ENSAMXG00000006073 I 0.629
HelroG145480 Helobdella robusta HelroG145480 I 0.629
GCM1 Erinaceus europaeus ENSEEUG00000013606 I 0.627
Gcm1 Rattus norvegicus ENSRNOG00000007932 D 0.623
Afo_R000272 Aptenodytes forsteri Afo_R000272 I 0.623
Gcm1 Mus musculus ENSMUSG00000023333 D 0.623
Aan_R001196 Calypte anna Aan_R001196 I 0.623
GCM2 Otolemur garnettii ENSOGAG00000012176 I 0.621
ENSTSYG00000006813 Tarsius syrichta ENSTSYG00000006813 I 0.621
GCM2 Pteropus vampyrus ENSPVAG00000004876 I 0.621
MCOS_0000650801 Mesocestoides corti MCOS_0000650801 I 0.619
ENSAPLG00000004160 Anas platyrhynchos ENSAPLG00000004160 I 0.616
Tal_R009935 Tyto alba Tal_R009935 I 0.616
Brh_R000788 Buceros rhinoceros Brh_R000788 I 0.616
ENSPMAG00000009211 Petromyzon marinus ENSPMAG00000009211 I 0.616
ENSMEUG00000004103 Macropus eugenii ENSMEUG00000004103 I 0.616
GCM1 Monodelphis domestica ENSMODG00000018803 I 0.616
ENSFALG00000001854 Ficedula albicollis ENSFALG00000001854 I 0.616
GCM1 Gallus gallus ENSGALG00000016316 I 0.616
GCM1 Dasypus novemcinctus ENSDNOG00000016682 I 0.613
XP_004449939.1 Dasypus novemcinctus XP_004449939.1 D 0.613
Gfo_R013721 Geospiza fortis Gfo_R013721 I 0.609