SMAR010130 (Strigamia maritima)
GCM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03615 (GCM) IPR003902 SMAR010130 T198144_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
gcm
M03764_2.00 		Drosophila melanogaster
HATGCGGGYVVBRCCCGCATV
BATGCGGGYVBBRCCCGCATD		 SELEX
Nitta et al.(2015)
gcm_1 		0.780 0.780
gcm
M03765_2.00 		Drosophila melanogaster
VATGCKGGYRCCMGCATV
BATGCKGGYRCCMGCATB		 SELEX
Nitta et al.(2015)
gcm_2 		0.780 0.780
gcm
M03766_2.00 		Drosophila melanogaster
YATGCGGGTACCAGCATV
BATGCTGGTACCCGCATR		 SELEX
Nitta et al.(2015)
gcm_3 		0.780 0.780
gcm
M10605_2.00 		Drosophila melanogaster
NDNATGCGGGYNB
VNRCCCGCATNHN		 Transfac
Matys et al.(2006)
I$GCM_01 		0.780 0.780
GCM2
M02023_2.00 		Taeniopygia guttata
NRTRHKGGYN
NRCCMDYAYN		 PBM
Weirauch et al.(2014)
pTH9341 		0.729 0.729
ENSTRUG00000003586
M02025_2.00 		Takifugu rubripes
NRTRNGGGYN
NRCCCNYAYN		 PBM
Weirauch et al.(2014)
pTH9357 		0.695 0.695
gcm2
M02026_2.00 		Drosophila melanogaster
ATGCGGGY
RCCCGCAT		 PBM
Weirauch et al.(2014)
pTH8361 		0.695 0.695
GCM2
M03067_2.00 		Homo sapiens
NATGCGGGYD
HRCCCGCATN		 SELEX
Jolma et al.(2013)
GCM2_1 		0.695 0.695
gcm2
M03767_2.00 		Drosophila melanogaster
NATGCGGGYNNNRCCCGCATN
NATGCGGGYNNNRCCCGCATN		 SELEX
Nitta et al.(2015)
gcm2_1 		0.695 0.695
gcm2
M03768_2.00 		Drosophila melanogaster
BATGCKGGTACCMGCATV
BATGCKGGTACCMGCATV		 SELEX
Nitta et al.(2015)
gcm2_2 		0.695 0.695
GCM2
M04881_2.00 		Homo sapiens
RTGCGGGYN
NRCCCGCAY		 SELEX
Yin et al.(2017)
GCM2_FL_HT-SELEX 		0.695 0.695
GCM2
M10602_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GCMB_Q2 		0.695 0.695
GCM2
M04882_2.00 		Homo sapiens
ATRHKGGYN
NRCCMDYAT		 SELEX
Yin et al.(2017)
GCM2_FL_Methyl-HT-SELEX 		0.695 0.695
GCM1
M02021_2.00 		Meleagris gallopavo
VTVNKGGYNN
NNRCCMNBAB		 PBM
Weirauch et al.(2014)
pTH8653 		0.678 0.678
Gcm1
M00168_2.00 		Mus musculus
NVTRVGGGY
RCCCBYABN		 PBM
Badis et al.(2009)
Gcm1_3732 		0.678 0.678
Gcm1
M02022_2.00 		Rattus norvegicus
NNRTRVGGGY
RCCCBYAYNN		 PBM
Weirauch et al.(2014)
pTH9283 		0.678 0.678
XP_004449939.1
M02027_2.00 		Dasypus novemcinctus
RTRSGGGY
RCCCSYAY		 PBM
Weirauch et al.(2014)
pTH9259 		0.678 0.678
gcm2
M02024_2.00 		Tetraodon nigroviridis
ATRCGGGY
RCCCGYAT		 PBM
Weirauch et al.(2014)
pTH9386 		0.661 0.661
GCM1
M02020_2.00 		Homo sapiens
NVTVNGGGN
NCCCNBABN		 PBM
Weirauch et al.(2014)
pTH7965 		0.644 0.644
GCM1
M03068_2.00 		Homo sapiens
BATGCGGGTR
YACCCGCATV		 SELEX
Jolma et al.(2013)
GCM1_1 		0.644 0.644
GCM1
M03069_2.00 		Homo sapiens
RTRYKGGYRCCMGYAN
NTRCKGGYRCCMRYAY		 SELEX
Jolma et al.(2013)
GCM1_2 		0.644 0.644
GCM1
M03070_2.00 		Homo sapiens
BATGCGGGTRS
SYACCCGCATV		 SELEX
Jolma et al.(2013)
GCM1_3 		0.644 0.644
GCM1
M04883_2.00 		Homo sapiens
RTGSGGGBV
BVCCCSCAY		 SELEX
Yin et al.(2017)
GCM1_eDBD_HT-SELEX 		0.644 0.644
GCM1
M05868_2.00 		Homo sapiens
ATGCGGGYV
BRCCCGCAT		 SMiLE-seq
Isakova et al.(2017)
GCM1 		0.644 0.644
GCM1
M10603_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GCMA_Q4 		0.644 0.644
GCM1
M10604_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GCM_Q2 		0.644 0.644
GCM1
M04884_2.00 		Homo sapiens
ATRNKGGYV
BRCCMNYAT		 SELEX
Yin et al.(2017)
GCM1_eDBD_Methyl-HT-SELEX 		0.644 0.644
For this family, TFs with SR scores > 0.607 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SMAR010130-PA GCM 1 59

Links

Other GCM family TFs
Other Strigamia maritima TFs

109 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
YQE_03062 Dendroctonus ponderosae YQE_03062 I 0.881
SINV21711 Solenopsis invicta SINV21711 I 0.881
ACYPI34548 Acyrthosiphon pisum ACYPI34548 I 0.881
L798_07938 Zootermopsis nevadensis L798_07938 I 0.864
DAPPUDRAFT_26189 Daphnia pulex DAPPUDRAFT_26189 I 0.864
HHAL003300-PA Halyomorpha halys HHAL003300-PA N 0.847
HMEL005671 Heliconius melpomene HMEL005671 I 0.847
MCINX011946 Melitaea cinxia MCINX011946 I 0.847
BGIBMGA006182 Bombyx mori BGIBMGA006182 I 0.847
PHUM436840 Pediculus humanus PHUM436840 I 0.847
NV17454 Nasonia vitripennis NV17454 I 0.847
ISCW022914 Ixodes scapularis ISCW022914 I 0.831
AFUN009837 Anopheles funestus AFUN009837 I 0.814
AMIN006368 Anopheles minimus AMIN006368 I 0.814
AARA011980 Anopheles arabiensis AARA011980 I 0.814
AMAM003661 Anopheles maculatus AMAM003661 I 0.814
AQUA003642 Anopheles quadriannulatus AQUA003642 I 0.814
ASTEI01672 Anopheles stephensi ASTEI01672 I 0.814
AALB008013 Anopheles albimanus AALB008013 I 0.814
AGAP007783 Anopheles gambiae AGAP007783 I 0.814
ADIR000711 Anopheles dirus ADIR000711 I 0.797
AFAF005680 Anopheles farauti AFAF005680 I 0.797
GJ17916 Drosophila virilis FBgn0205084 I 0.797
AAEL000623 Aedes aegypti AAEL000623 I 0.797
GI17574 Drosophila mojavensis FBgn0140318 I 0.797
GM12386 Drosophila sechellia FBgn0167323 I 0.780
gcm Drosophila melanogaster FBgn0014179 D 0.780
Sakowv30018670m.g Saccoglossus kowalevskii Sakowv30018670m.g I 0.763
gw.943.3.1 Branchiostoma floridae gw.943.3.1 I 0.763
GK23810 Drosophila willistoni FBgn0225772 I 0.746
CGI_10019940 Crassostrea gigas CGI_10019940 I 0.729
Brh_R007088 Buceros rhinoceros Brh_R007088 I 0.729
AARA011979 Anopheles arabiensis AARA011979 I 0.729
AGAP007782 Anopheles gambiae AGAP007782 I 0.729
ACOM031032 Anopheles coluzzii ACOM031032 I 0.729
AEPI007161 Anopheles epiroticus AEPI007161 I 0.729
GCM2 Taeniopygia guttata ENSTGUG00000005756 D 0.729
AQUA003641 Anopheles quadriannulatus AQUA003641 I 0.729
AMEM008520 Anopheles merus AMEM008520 I 0.729
ENSFALG00000013344 Ficedula albicollis ENSFALG00000013344 I 0.729
Afo_R013226 Aptenodytes forsteri Afo_R013226 I 0.729
Gfo_R006501 Geospiza fortis Gfo_R006501 I 0.729
Cmyd_10006831 Chelonia mydas Cmyd_10006831 I 0.729
Aan_R001550 Calypte anna Aan_R001550 I 0.729
GCM2 Tupaia belangeri ENSTBEG00000006181 I 0.712
AALB008012 Anopheles albimanus AALB008012 I 0.712
GCM2 Monodelphis domestica ENSMODG00000010371 I 0.712
ENSGMOG00000012709 Gadus morhua ENSGMOG00000012709 I 0.712
MDOA003644 Musca domestica MDOA003644 I 0.712
GCM2 Gallus gallus ENSGALG00000012768 I 0.712
GCM2 Bos taurus ENSBTAG00000018787 I 0.712
ENSOARG00000015521 Ovis aries ENSOARG00000015521 I 0.712
GCM2 Ochotona princeps ENSOPRG00000012641 I 0.712
ENSONIG00000009885 Oreochromis niloticus ENSONIG00000009885 I 0.712
gcm2 Danio rerio ENSDARG00000045413 I 0.712
GF22779 Drosophila ananassae FBgn0099773 I 0.695
GG10041 Drosophila erecta FBgn0102353 I 0.695
GL18919 Drosophila persimilis FBgn0156520 I 0.695
GA17734 Drosophila pseudoobscura FBgn0077744 I 0.695
GJ18313 Drosophila virilis FBgn0205472 I 0.695
ENSPMAG00000001027 Petromyzon marinus ENSPMAG00000001027 I 0.695
GCM2 Equus caballus ENSECAG00000017632 I 0.695
GCM2 Felis catus ENSFCAG00000001608 I 0.695
GCM2 Loxodonta africana ENSLAFG00000007475 I 0.695
GCM2 Meleagris gallopavo ENSMGAG00000003533 I 0.695
GCM2 Callithrix jacchus ENSCJAG00000019182 I 0.695
GCM2 Choloepus hoffmanni ENSCHOG00000011562 I 0.695
ENSAMEG00000002669 Ailuropoda melanoleuca ENSAMEG00000002669 I 0.695
ENSAMXG00000006073 Astyanax mexicanus ENSAMXG00000006073 I 0.695
GCM2 Canis familiaris ENSCAFG00000009747 I 0.695
ENSMICG00000004238 Microcebus murinus ENSMICG00000004238 I 0.695
ENSNLEG00000000645 Nomascus leucogenys ENSNLEG00000000645 I 0.695
gcm2 Xenopus tropicalis XB-GENE-492156 I 0.695
ENSTRUG00000001670 Takifugu rubripes ENSTRUG00000001670 I 0.695
ENSTRUG00000003586 Takifugu rubripes ENSTRUG00000003586 D 0.695
GCM2 Tursiops truncatus ENSTTRG00000003674 I 0.695
gcm2 Drosophila melanogaster FBgn0019809 D 0.695
ENSPSIG00000004698 Pelodiscus sinensis ENSPSIG00000004698 I 0.695
GCM2 Ornithorhynchus anatinus ENSOANG00000007191 I 0.695
GCM2 Oryctolagus cuniculus ENSOCUG00000017698 I 0.695
GCM2 Procavia capensis ENSPCAG00000011887 I 0.695
ENSXMAG00000002726 Xiphophorus maculatus ENSXMAG00000002726 I 0.695
Gfo_R013721 Geospiza fortis Gfo_R013721 I 0.678
ENSTSYG00000006813 Tarsius syrichta ENSTSYG00000006813 I 0.678
GCM2 Otolemur garnettii ENSOGAG00000012176 I 0.678
ENSPMAG00000009211 Petromyzon marinus ENSPMAG00000009211 I 0.678
GCM2 Anolis carolinensis ENSACAG00000008677 I 0.678
GCM1 Monodelphis domestica ENSMODG00000018803 I 0.678
GCM1 Dasypus novemcinctus ENSDNOG00000016682 I 0.678
GCM1 Meleagris gallopavo ENSMGAG00000013927 D 0.678
Brh_R000788 Buceros rhinoceros Brh_R000788 I 0.678
ENSSHAG00000015905 Sarcophilus harrisii ENSSHAG00000015905 I 0.678
XP_004449939.1 Dasypus novemcinctus XP_004449939.1 D 0.678
Aan_R001196 Calypte anna Aan_R001196 I 0.678
Afo_R000272 Aptenodytes forsteri Afo_R000272 I 0.678
ENSTGUG00000012867 Taeniopygia guttata ENSTGUG00000012867 I 0.678
GK23867 Drosophila willistoni FBgn0225829 I 0.678
ENSCPOG00000006856 Cavia porcellus ENSCPOG00000006856 I 0.661
GCM1 Ornithorhynchus anatinus ENSOANG00000009677 N 0.661
ENSAMEG00000005755 Ailuropoda melanoleuca ENSAMEG00000005755 I 0.644
ENSSSCG00000002630 Sus scrofa ENSSSCG00000002630 I 0.644
GCM1 Myotis lucifugus ENSMLUG00000002762 I 0.644
GCM1 Pteropus vampyrus ENSPVAG00000013341 I 0.644
ENSSTOG00000022342 Ictidomys tridecemlineatus ENSSTOG00000022342 I 0.644
Myotis_brandtii_Gcm1_10005135 Myotis brandtii Myotis_brandtii_Gcm1_10005135 I 0.644
GCM1 Tursiops truncatus ENSTTRG00000015250 I 0.644
GCM2 Pteropus vampyrus ENSPVAG00000004876 I 0.627
GCM1 Otolemur garnettii ENSOGAG00000007879 I 0.627
Gcm1 Dipodomys ordii ENSDORG00000003627 I 0.610