gw.943.3.1 (Branchiostoma floridae)
GCM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03615 (GCM) IPR003902 gw.943.3.1 T198179_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
gcm
M03764_2.00 		Drosophila melanogaster
HATGCGGGYVVBRCCCGCATV
BATGCGGGYVBBRCCCGCATD		 SELEX
Nitta et al.(2015)
gcm_1 		0.763 0.763
gcm
M03765_2.00 		Drosophila melanogaster
VATGCKGGYRCCMGCATV
BATGCKGGYRCCMGCATB		 SELEX
Nitta et al.(2015)
gcm_2 		0.763 0.763
gcm
M03766_2.00 		Drosophila melanogaster
YATGCGGGTACCAGCATV
BATGCTGGTACCCGCATR		 SELEX
Nitta et al.(2015)
gcm_3 		0.763 0.763
gcm
M10605_2.00 		Drosophila melanogaster
NDNATGCGGGYNB
VNRCCCGCATNHN		 Transfac
Matys et al.(2006)
I$GCM_01 		0.763 0.763
GCM2
M02023_2.00 		Taeniopygia guttata
NRTRHKGGYN
NRCCMDYAYN		 PBM
Weirauch et al.(2014)
pTH9341 		0.695 0.695
gcm2
M02026_2.00 		Drosophila melanogaster
ATGCGGGY
RCCCGCAT		 PBM
Weirauch et al.(2014)
pTH8361 		0.695 0.695
GCM2
M03067_2.00 		Homo sapiens
NATGCGGGYD
HRCCCGCATN		 SELEX
Jolma et al.(2013)
GCM2_1 		0.695 0.695
gcm2
M03767_2.00 		Drosophila melanogaster
NATGCGGGYNNNRCCCGCATN
NATGCGGGYNNNRCCCGCATN		 SELEX
Nitta et al.(2015)
gcm2_1 		0.695 0.695
gcm2
M03768_2.00 		Drosophila melanogaster
BATGCKGGTACCMGCATV
BATGCKGGTACCMGCATV		 SELEX
Nitta et al.(2015)
gcm2_2 		0.695 0.695
GCM2
M04881_2.00 		Homo sapiens
RTGCGGGYN
NRCCCGCAY		 SELEX
Yin et al.(2017)
GCM2_FL_HT-SELEX 		0.695 0.695
GCM2
M10602_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GCMB_Q2 		0.695 0.695
GCM2
M04882_2.00 		Homo sapiens
ATRHKGGYN
NRCCMDYAT		 SELEX
Yin et al.(2017)
GCM2_FL_Methyl-HT-SELEX 		0.695 0.695
GCM1
M02021_2.00 		Meleagris gallopavo
VTVNKGGYNN
NNRCCMNBAB		 PBM
Weirauch et al.(2014)
pTH8653 		0.678 0.678
Gcm1
M00168_2.00 		Mus musculus
NVTRVGGGY
RCCCBYABN		 PBM
Badis et al.(2009)
Gcm1_3732 		0.661 0.661
Gcm1
M02022_2.00 		Rattus norvegicus
NNRTRVGGGY
RCCCBYAYNN		 PBM
Weirauch et al.(2014)
pTH9283 		0.661 0.661
ENSTRUG00000003586
M02025_2.00 		Takifugu rubripes
NRTRNGGGYN
NRCCCNYAYN		 PBM
Weirauch et al.(2014)
pTH9357 		0.661 0.661
XP_004449939.1
M02027_2.00 		Dasypus novemcinctus
RTRSGGGY
RCCCSYAY		 PBM
Weirauch et al.(2014)
pTH9259 		0.661 0.661
GCM1
M02020_2.00 		Homo sapiens
NVTVNGGGN
NCCCNBABN		 PBM
Weirauch et al.(2014)
pTH7965 		0.644 0.644
gcm2
M02024_2.00 		Tetraodon nigroviridis
ATRCGGGY
RCCCGYAT		 PBM
Weirauch et al.(2014)
pTH9386 		0.644 0.644
GCM1
M03068_2.00 		Homo sapiens
BATGCGGGTR
YACCCGCATV		 SELEX
Jolma et al.(2013)
GCM1_1 		0.644 0.644
GCM1
M03069_2.00 		Homo sapiens
RTRYKGGYRCCMGYAN
NTRCKGGYRCCMRYAY		 SELEX
Jolma et al.(2013)
GCM1_2 		0.644 0.644
GCM1
M03070_2.00 		Homo sapiens
BATGCGGGTRS
SYACCCGCATV		 SELEX
Jolma et al.(2013)
GCM1_3 		0.644 0.644
GCM1
M04883_2.00 		Homo sapiens
RTGSGGGBV
BVCCCSCAY		 SELEX
Yin et al.(2017)
GCM1_eDBD_HT-SELEX 		0.644 0.644
GCM1
M05868_2.00 		Homo sapiens
ATGCGGGYV
BRCCCGCAT		 SMiLE-seq
Isakova et al.(2017)
GCM1 		0.644 0.644
GCM1
M10603_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GCMA_Q4 		0.644 0.644
GCM1
M10604_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GCM_Q2 		0.644 0.644
GCM1
M04884_2.00 		Homo sapiens
ATRNKGGYV
BRCCMNYAT		 SELEX
Yin et al.(2017)
GCM1_eDBD_Methyl-HT-SELEX 		0.644 0.644
For this family, TFs with SR scores > 0.607 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
gw.943.3.1 GCM 1 59

Links

Other GCM family TFs
Other Branchiostoma floridae TFs

51 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GI17574 Drosophila mojavensis FBgn0140318 I 0.763
GJ17916 Drosophila virilis FBgn0205084 I 0.763
SMAR010130 Strigamia maritima SMAR010130 I 0.763
GK23810 Drosophila willistoni FBgn0225772 I 0.746
ISCW022914 Ixodes scapularis ISCW022914 I 0.729
AGAP007783 Anopheles gambiae AGAP007783 I 0.712
GCM2 Equus caballus ENSECAG00000017632 I 0.712
GCM2 Otolemur garnettii ENSOGAG00000012176 I 0.712
ENSPMAG00000001027 Petromyzon marinus ENSPMAG00000001027 I 0.712
L798_07938 Zootermopsis nevadensis L798_07938 I 0.712
AALB008013 Anopheles albimanus AALB008013 I 0.712
AMIN006368 Anopheles minimus AMIN006368 I 0.712
AQUA003642 Anopheles quadriannulatus AQUA003642 I 0.712
GCM2 Callithrix jacchus ENSCJAG00000019182 I 0.695
ENSFALG00000013344 Ficedula albicollis ENSFALG00000013344 I 0.695
GCM2 Felis catus ENSFCAG00000001608 I 0.695
GCM2 Loxodonta africana ENSLAFG00000007475 I 0.695
ENSNLEG00000000645 Nomascus leucogenys ENSNLEG00000000645 I 0.695
ENSPSIG00000004698 Pelodiscus sinensis ENSPSIG00000004698 I 0.695
ENSTSYG00000006813 Tarsius syrichta ENSTSYG00000006813 I 0.695
GJ18313 Drosophila virilis FBgn0205472 I 0.695
HMEL005671 Heliconius melpomene HMEL005671 I 0.695
NV17454 Nasonia vitripennis NV17454 I 0.695
AFAF005680 Anopheles farauti AFAF005680 I 0.695
DAPPUDRAFT_26189 Daphnia pulex DAPPUDRAFT_26189 I 0.678
GCM2 Anolis carolinensis ENSACAG00000008677 I 0.678
ENSAMXG00000006073 Astyanax mexicanus ENSAMXG00000006073 I 0.678
GCM2 Gallus gallus ENSGALG00000012768 I 0.678
GCM1 Meleagris gallopavo ENSMGAG00000013927 D 0.678
GCM2 Ornithorhynchus anatinus ENSOANG00000007191 I 0.678
GCM2 Oryctolagus cuniculus ENSOCUG00000017698 I 0.678
ENSTGUG00000012867 Taeniopygia guttata ENSTGUG00000012867 I 0.678
Afo_R000272 Aptenodytes forsteri Afo_R000272 I 0.678
Brh_R000788 Buceros rhinoceros Brh_R000788 I 0.678
Sakowv30018670m.g Saccoglossus kowalevskii Sakowv30018670m.g I 0.678
AGAP007782 Anopheles gambiae AGAP007782 I 0.661
ENSSHAG00000015905 Sarcophilus harrisii ENSSHAG00000015905 I 0.661
ENSTRUG00000003586 Takifugu rubripes ENSTRUG00000003586 D 0.661
Cmyd_10006831 Chelonia mydas Cmyd_10006831 I 0.661
gcm2 Xenopus tropicalis XB-GENE-492156 I 0.661
AARA011979 Anopheles arabiensis AARA011979 I 0.661
ACOM031032 Anopheles coluzzii ACOM031032 I 0.661
AEPI007161 Anopheles epiroticus AEPI007161 I 0.661
AMEM008520 Anopheles merus AMEM008520 I 0.661
AQUA003641 Anopheles quadriannulatus AQUA003641 I 0.661
ENSAMEG00000005755 Ailuropoda melanoleuca ENSAMEG00000005755 I 0.644
GCM1 Pteropus vampyrus ENSPVAG00000013341 I 0.644
GCM1 Tursiops truncatus ENSTTRG00000015250 I 0.644
GCM1 Otolemur garnettii ENSOGAG00000007879 I 0.627
GCM2 Pteropus vampyrus ENSPVAG00000004876 I 0.627
Gcm1 Dipodomys ordii ENSDORG00000003627 I 0.610