CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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gcm
(
Drosophila melanogaster
)
GCM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03615 (GCM)
IPR003902
FBgn0014179
T198076_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Enables DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Involved in several processes, including embryonic crystal cell differentiation; neurogenesis; and positive regulation of macromolecule metabolic process. Located in nucleus. Is expressed in several structures, including central nervous system; extended germ band embryo; glial cell; hemocyte; and somatic precursor cell. Used to study hypoparathyroidism and infertility. Human ortholog(s) of this gene implicated in familial isolated hypoparathyroidism and hyperparathyroidism. Orthologous to human GCM2 (glial cells missing transcription factor 2). [provided by Alliance of Genome Resources, Apr 2022]
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
gcm
M03764_2.00
Drosophila melanogaster
HATGCGGGYVVBRCCCGCATV
BATGCGGGYVBBRCCCGCATD
SELEX
Nitta et al.(2015)
gcm_1
(Direct)
(Direct)
gcm
M03765_2.00
Drosophila melanogaster
VATGCKGGYRCCMGCATV
BATGCKGGYRCCMGCATB
SELEX
Nitta et al.(2015)
gcm_2
(Direct)
(Direct)
gcm
M03766_2.00
Drosophila melanogaster
YATGCGGGTACCAGCATV
BATGCTGGTACCCGCATR
SELEX
Nitta et al.(2015)
gcm_3
(Direct)
(Direct)
gcm
M10605_2.00
Drosophila melanogaster
NDNATGCGGGYNB
VNRCCCGCATNHN
Transfac
Matys et al.(2006)
I$GCM_01
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
gcm2
M02026_2.00
Drosophila melanogaster
ATGCGGGY
RCCCGCAT
PBM
Weirauch et al.(2014)
pTH8361
0.714
0.714
gcm2
M03767_2.00
Drosophila melanogaster
NATGCGGGYNNNRCCCGCATN
NATGCGGGYNNNRCCCGCATN
SELEX
Nitta et al.(2015)
gcm2_1
0.714
0.714
gcm2
M03768_2.00
Drosophila melanogaster
BATGCKGGTACCMGCATV
BATGCKGGTACCMGCATV
SELEX
Nitta et al.(2015)
gcm2_2
0.714
0.714
GCM2
M02023_2.00
Taeniopygia guttata
NRTRHKGGYN
NRCCMDYAYN
PBM
Weirauch et al.(2014)
pTH9341
0.657
0.657
ENSTRUG00000003586
M02025_2.00
Takifugu rubripes
NRTRNGGGYN
NRCCCNYAYN
PBM
Weirauch et al.(2014)
pTH9357
0.650
0.650
GCM2
M03067_2.00
Homo sapiens
NATGCGGGYD
HRCCCGCATN
SELEX
Jolma et al.(2013)
GCM2_1
0.650
0.650
GCM2
M04881_2.00
Homo sapiens
RTGCGGGYN
NRCCCGCAY
SELEX
Yin et al.(2017)
GCM2_FL_HT-SELEX
0.650
0.650
GCM2
M10602_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GCMB_Q2
0.650
0.650
GCM2
M04882_2.00
Homo sapiens
ATRHKGGYN
NRCCMDYAT
SELEX
Yin et al.(2017)
GCM2_FL_Methyl-HT-SELEX
0.650
0.650
gcm2
M02024_2.00
Tetraodon nigroviridis
ATRCGGGY
RCCCGYAT
PBM
Weirauch et al.(2014)
pTH9386
0.636
0.636
For this family, TFs with SR scores >
0.607
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0079451
GCM
47
186
FDDFNDWSNGHCRLIYSVQSDEARKHASGWAMRNTNNHNVNILKKSCLGVLLCSAKCKLPNGASVHLRPAICDKARRKQQGKQCPNRNCNGRLEIQACRGHCGYPVTHFWRRDGNGIYFQAKGTHDHPRPEAKGSTEARR
FBpp0307464
GCM
47
186
FDDFNDWSNGHCRLIYSVQSDEARKHASGWAMRNTNNHNVNILKKSCLGVLLCSAKCKLPNGASVHLRPAICDKARRKQQGKQCPNRNCNGRLEIQACRGHCGYPVTHFWRRDGNGIYFQAKGTHDHPRPEAKGSTEARR
Links
Other
GCM
family TFs
Other
Drosophila melanogaster
TFs
185 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
GM12386
Drosophila sechellia
FBgn0167323
I
1.000
GG24019
Drosophila erecta
FBgn0116158
I
0.993
GE10457
Drosophila yakuba
FBgn0228318
I
0.986
GL19218
Drosophila persimilis
FBgn0156817
I
0.971
GA11505
Drosophila pseudoobscura
FBgn0071556
I
0.971
GD22349
Drosophila simulans
FBgn0193756
I
0.964
GF21907
Drosophila ananassae
FBgn0098907
I
0.964
GK23810
Drosophila willistoni
FBgn0225772
I
0.929
GH11056
Drosophila grimshawi
FBgn0118537
I
0.893
GJ17916
Drosophila virilis
FBgn0205084
I
0.893
GI17574
Drosophila mojavensis
FBgn0140318
I
0.893
MDOA004732
Musca domestica
MDOA004732
I
0.871
AMEM005966
Anopheles merus
AMEM005966
I
0.782
ACOM031025
Anopheles coluzzii
ACOM031025
I
0.782
SMAR010130
Strigamia maritima
SMAR010130
I
0.780
PPAI003635
Phlebotomus papatasi
PPAI003635
I
0.779
ADIR000711
Anopheles dirus
ADIR000711
I
0.764
AEPI007160
Anopheles epiroticus
AEPI007160
I
0.764
ACUA009622
Anopheles culicifacies
ACUA009622
I
0.757
AALB008013
Anopheles albimanus
AALB008013
I
0.757
AATE008476
Anopheles atroparvus
AATE008476
I
0.757
ACHR001414
Anopheles christyi
ACHR001414
I
0.757
AMAM003661
Anopheles maculatus
AMAM003661
I
0.757
AFAF005680
Anopheles farauti
AFAF005680
I
0.757
AGAP007783
Anopheles gambiae
AGAP007783
I
0.757
ASTEI01672
Anopheles stephensi
ASTEI01672
I
0.757
ADAC002327
Anopheles darlingi
ADAC002327
I
0.757
AQUA003642
Anopheles quadriannulatus
AQUA003642
I
0.757
ASIS002985
Anopheles sinensis
ASIS002985
I
0.757
AMIN006368
Anopheles minimus
AMIN006368
I
0.757
AFUN009837
Anopheles funestus
AFUN009837
I
0.757
AARA011980
Anopheles arabiensis
AARA011980
I
0.750
YQE_03062
Dendroctonus ponderosae
YQE_03062
I
0.743
L798_07938
Zootermopsis nevadensis
L798_07938
I
0.736
AMEC020313
Anopheles melas
AMEC020313
I
0.736
AAEL000623
Aedes aegypti
AAEL000623
I
0.736
PHUM436840
Pediculus humanus
PHUM436840
I
0.736
HMEL005671
Heliconius melpomene
HMEL005671
I
0.729
MCINX011946
Melitaea cinxia
MCINX011946
I
0.729
CLEC013329
Cimex lectularius
CLEC013329
I
0.729
LDEC012509
Leptinotarsa decemlineata
LDEC012509
I
0.729
DAPPUDRAFT_26189
Daphnia pulex
DAPPUDRAFT_26189
I
0.729
BGIBMGA006182
Bombyx mori
BGIBMGA006182
I
0.729
CpipJ_CPIJ006639
Culex pipiens
CpipJ_CPIJ006639
I
0.721
AALB008012
Anopheles albimanus
AALB008012
I
0.721
CPIJ006640
Culex quinquefasciatus
CPIJ006640
I
0.721
GH10675
Drosophila grimshawi
FBgn0118156
I
0.721
CpipJ_CPIJ006640
Culex pipiens
CpipJ_CPIJ006640
I
0.721
AAEL000631
Aedes aegypti
AAEL000631
I
0.721
CPIJ006639
Culex quinquefasciatus
CPIJ006639
I
0.721
AATE020589
Anopheles atroparvus
AATE020589
I
0.721
Hsal_09608--XP_393815.2_APIME
Harpegnathos saltator
Hsal_09608--XP_393815.2_APIME
I
0.721
KGM_05743
Danaus plexippus
KGM_05743
I
0.721
Cflo_04549--XP_393815.2_APIME
Camponotus floridanus
Cflo_04549--XP_393815.2_APIME
I
0.721
TC014730
Tribolium castaneum
TC014730
I
0.721
AMAM005757
Anopheles maculatus
AMAM005757
I
0.716
gcm2
Drosophila melanogaster
FBgn0019809
D
0.714
SINV21711
Solenopsis invicta
SINV21711
I
0.714
GG10041
Drosophila erecta
FBgn0102353
I
0.714
NV17454
Nasonia vitripennis
NV17454
I
0.714
GF22779
Drosophila ananassae
FBgn0099773
I
0.714
GI11073
Drosophila mojavensis
FBgn0133835
I
0.714
Ocbimv22027544m.g
Octopus bimaculoides
Ocbimv22027544m.g
I
0.714
RPRC001299
Rhodnius prolixus
RPRC001299
I
0.714
GE18856
Drosophila yakuba
FBgn0236239
I
0.714
GB45031
Apis mellifera
GB45031
I
0.714
GJ18313
Drosophila virilis
FBgn0205472
I
0.714
GM17569
Drosophila sechellia
FBgn0172477
I
0.714
ACYPI34548
Acyrthosiphon pisum
ACYPI34548
I
0.714
ACEP23384
Atta cephalotes
ACEP23384
I
0.714
GL18919
Drosophila persimilis
FBgn0156520
I
0.707
GK23867
Drosophila willistoni
FBgn0225829
I
0.707
GA17734
Drosophila pseudoobscura
FBgn0077744
I
0.707
MDOA003644
Musca domestica
MDOA003644
I
0.700
LCUP008083
Lucilia cuprina
LCUP008083
I
0.700
ASIS021139
Anopheles sinensis
ASIS021139
I
0.700
CapteG133139
Capitella teleta
CapteG133139
I
0.699
tetur09g06060
Tetranychus urticae
tetur09g06060
I
0.693
CGI_10019940
Crassostrea gigas
CGI_10019940
I
0.693
ISCW022914
Ixodes scapularis
ISCW022914
I
0.693
ENSTRUG00000001670
Takifugu rubripes
ENSTRUG00000001670
I
0.690
ADIR000710
Anopheles dirus
ADIR000710
I
0.686
AEPI007161
Anopheles epiroticus
AEPI007161
I
0.686
AARA011979
Anopheles arabiensis
AARA011979
I
0.686
AQUA003641
Anopheles quadriannulatus
AQUA003641
I
0.686
AMEM008520
Anopheles merus
AMEM008520
I
0.686
AGAP007782
Anopheles gambiae
AGAP007782
I
0.686
ACOM031032
Anopheles coluzzii
ACOM031032
I
0.686
AFAF000663
Anopheles farauti
AFAF000663
I
0.686
ASTEI01673
Anopheles stephensi
ASTEI01673
I
0.671
fgenesh2_pg.scaffold_122000051
Branchiostoma floridae
fgenesh2_pg.scaffold_122000051
I
0.671
ACHR004082
Anopheles christyi
ACHR004082
I
0.671
AFUN009836
Anopheles funestus
AFUN009836
I
0.671
ACUA018162
Anopheles culicifacies
ACUA018162
I
0.671
AMIN006367
Anopheles minimus
AMIN006367
I
0.671
Gfo_R006501
Geospiza fortis
Gfo_R006501
I
0.667
GCM2
Taeniopygia guttata
ENSTGUG00000005756
D
0.667
ENSAPLG00000002817
Anas platyrhynchos
ENSAPLG00000002817
I
0.667
GCM2
Pan troglodytes
ENSPTRG00000017724
I
0.667
A_07498
Schistosoma haematobium
A_07498
I
0.667
GCM2
Tupaia belangeri
ENSTBEG00000006181
I
0.667
Brh_R007088
Buceros rhinoceros
Brh_R007088
I
0.667
ENSONIG00000009885
Oreochromis niloticus
ENSONIG00000009885
I
0.667
Afo_R013226
Aptenodytes forsteri
Afo_R013226
I
0.667
GCM2
Otolemur garnettii
ENSOGAG00000012176
I
0.664
SMTD_0000548601
Schistosoma mattheei
SMTD_0000548601
I
0.664
SMRZ_0001689701
Schistosoma margrebowiei
SMRZ_0001689701
I
0.664
Smp_171130
Schistosoma mansoni
Smp_171130
I
0.664
Sjc_0090760
Schistosoma japonicum
Sjc_0090760
I
0.664
GCM2
Gorilla gorilla
ENSGGOG00000023360
I
0.659
GCM2
Bos taurus
ENSBTAG00000018787
I
0.659
GCM2
Homo sapiens
ENSG00000124827
D
0.659
ENSP00000368805
Macaca fascicularis
ENSP00000368805
I
0.659
ENSP00000368805-D1
Bos grunniens
ENSP00000368805-D1
I
0.659
Aan_R001550
Calypte anna
Aan_R001550
I
0.659
ENSAMEG00000002669
Ailuropoda melanoleuca
ENSAMEG00000002669
I
0.659
GCM2
Macaca mulatta
ENSMMUG00000007719
I
0.659
ENSPSIG00000004698
Pelodiscus sinensis
ENSPSIG00000004698
I
0.659
ENSPPYG00000016228
Pongo abelii
ENSPPYG00000016228
I
0.659
ENSPFOG00000008781
Poecilia formosa
ENSPFOG00000008781
I
0.659
ENSCSAG00000007467
Chlorocebus sabaeus
ENSCSAG00000007467
I
0.659
ENSXMAG00000002726
Xiphophorus maculatus
ENSXMAG00000002726
I
0.659
ENSSTOG00000009563
Ictidomys tridecemlineatus
ENSSTOG00000009563
I
0.659
ENSSHAG00000010590
Sarcophilus harrisii
ENSSHAG00000010590
I
0.659
GCM2
Tursiops truncatus
ENSTTRG00000003674
I
0.659
ENSPANG00000026314
Papio anubis
ENSPANG00000026314
I
0.659
GCM2
Meleagris gallopavo
ENSMGAG00000003533
I
0.659
gcm2
Danio rerio
ENSDARG00000045413
I
0.659
ENSFALG00000013344
Ficedula albicollis
ENSFALG00000013344
I
0.657
ENSOARG00000015521
Ovis aries
ENSOARG00000015521
I
0.657
BGLB002570
Biomphalaria glabrata
BGLB002570
I
0.657
Cmyd_10006831
Chelonia mydas
Cmyd_10006831
I
0.657
GCM2
Cavia porcellus
ENSCPOG00000011254
I
0.652
GCM2
Choloepus hoffmanni
ENSCHOG00000011562
I
0.652
ENSMICG00000004238
Microcebus murinus
ENSMICG00000004238
I
0.652
GCM2
Ochotona princeps
ENSOPRG00000012641
I
0.652
Gcm2
Mus musculus
ENSMUSG00000021362
I
0.652
gcm2
Oryzias latipes
ENSORLG00000019715
I
0.652
Gcm2
Rattus norvegicus
ENSRNOG00000015008
I
0.652
GCM2
Vicugna pacos
ENSVPAG00000003006
I
0.652
ENSMPUG00000000633
Mustela putorius furo
ENSMPUG00000000633
I
0.652
GCM2
Monodelphis domestica
ENSMODG00000010371
I
0.652
gcm2
Gasterosteus aculeatus
ENSGACG00000001157
I
0.652
ENSLACG00000009363
Latimeria chalumnae
ENSLACG00000009363
I
0.652
GCM2
Myotis lucifugus
ENSMLUG00000004637
I
0.652
GCM2
Canis familiaris
ENSCAFG00000009747
I
0.652
GCM2
Callithrix jacchus
ENSCJAG00000019182
I
0.650
GCM2
Gallus gallus
ENSGALG00000012768
I
0.650
LotgiG112320
Lottia gigantea
LotgiG112320
I
0.650
ENSNLEG00000000645
Nomascus leucogenys
ENSNLEG00000000645
I
0.650
ENSTRUG00000003586
Takifugu rubripes
ENSTRUG00000003586
D
0.650
Sakowv30018670m.g
Saccoglossus kowalevskii
Sakowv30018670m.g
I
0.650
GCM1
Oryctolagus cuniculus
ENSOCUG00000009246
I
0.645
GCM2
Dasypus novemcinctus
ENSDNOG00000003701
I
0.645
gcm2
Tetraodon nigroviridis
ENSTNIG00000005042
D
0.645
GCM2
Echinops telfairi
ENSETEG00000012473
I
0.644
ENSACAG00000008561
Anolis carolinensis
ENSACAG00000008561
I
0.644
GCM2
Oryctolagus cuniculus
ENSOCUG00000017698
I
0.643
ENSTSYG00000006813
Tarsius syrichta
ENSTSYG00000006813
I
0.643
GCM2
Loxodonta africana
ENSLAFG00000007475
I
0.643
GCM2
Felis catus
ENSFCAG00000001608
I
0.643
gw.285.88.1
Branchiostoma floridae
gw.285.88.1
I
0.642
Alligator_sinensis_CCG008975.1
Alligator sinensis
Alligator_sinensis_CCG008975.1
I
0.638
HelroG145480
Helobdella robusta
HelroG145480
I
0.638
Pvit_11235
Pogona vitticeps
Pvit_11235
I
0.638
GCM2
Procavia capensis
ENSPCAG00000011887
I
0.638
ENSGMOG00000012709
Gadus morhua
ENSGMOG00000012709
I
0.638
gcm2.S
Xenopus laevis
XB-GENE-866131
I
0.638
GCM2
Equus caballus
ENSECAG00000017632
I
0.636
GCM2
Ornithorhynchus anatinus
ENSOANG00000007191
I
0.636
gcm2
Xenopus tropicalis
XB-GENE-492156
I
0.636
ENSAMXG00000006073
Astyanax mexicanus
ENSAMXG00000006073
I
0.636
ENSLOCG00000013145
Lepisosteus oculatus
ENSLOCG00000013145
I
0.630
GCM1
Erinaceus europaeus
ENSEEUG00000013606
I
0.627
DILT_0000717101
Diphyllobothrium latum
DILT_0000717101
I
0.627
ECPE_0000966901
Echinostoma caproni
ECPE_0000966901
I
0.622
T265_00115
Opisthorchis viverrini
T265_00115
I
0.619
csin108204
Clonorchis sinensis
csin108204
I
0.619
GCM2
Pteropus vampyrus
ENSPVAG00000004876
I
0.614
GCM2
Anolis carolinensis
ENSACAG00000008677
I
0.614
MCOS_0000650801
Mesocestoides corti
MCOS_0000650801
I
0.612
ENSLACG00000003372
Latimeria chalumnae
ENSLACG00000003372
I
0.609
SSLN_0001903801
Schistocephalus solidus
SSLN_0001903801
I
0.609
gcm1.S
Xenopus laevis
XB-GENE-6252686
I
0.609