gcm1.S (Xenopus laevis)
GCM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03615 (GCM) IPR003902 XB-GENE-6252686 T198194_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Gcm1
M00168_2.00 		Mus musculus
NVTRVGGGY
RCCCBYABN		 PBM
Badis et al.(2009)
Gcm1_3732 		0.826 0.826
XP_004449939.1
M02027_2.00 		Dasypus novemcinctus
RTRSGGGY
RCCCSYAY		 PBM
Weirauch et al.(2014)
pTH9259 		0.826 0.826
GCM1
M02020_2.00 		Homo sapiens
NVTVNGGGN
NCCCNBABN		 PBM
Weirauch et al.(2014)
pTH7965 		0.819 0.819
Gcm1
M02022_2.00 		Rattus norvegicus
NNRTRVGGGY
RCCCBYAYNN		 PBM
Weirauch et al.(2014)
pTH9283 		0.819 0.819
GCM1
M03068_2.00 		Homo sapiens
BATGCGGGTR
YACCCGCATV		 SELEX
Jolma et al.(2013)
GCM1_1 		0.819 0.819
GCM1
M03069_2.00 		Homo sapiens
RTRYKGGYRCCMGYAN
NTRCKGGYRCCMRYAY		 SELEX
Jolma et al.(2013)
GCM1_2 		0.819 0.819
GCM1
M03070_2.00 		Homo sapiens
BATGCGGGTRS
SYACCCGCATV		 SELEX
Jolma et al.(2013)
GCM1_3 		0.819 0.819
GCM1
M04883_2.00 		Homo sapiens
RTGSGGGBV
BVCCCSCAY		 SELEX
Yin et al.(2017)
GCM1_eDBD_HT-SELEX 		0.819 0.819
GCM1
M05868_2.00 		Homo sapiens
ATGCGGGYV
BRCCCGCAT		 SMiLE-seq
Isakova et al.(2017)
GCM1 		0.819 0.819
GCM1
M10603_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GCMA_Q4 		0.819 0.819
GCM1
M10604_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GCM_Q2 		0.819 0.819
GCM1
M04884_2.00 		Homo sapiens
ATRNKGGYV
BRCCMNYAT		 SELEX
Yin et al.(2017)
GCM1_eDBD_Methyl-HT-SELEX 		0.819 0.819
GCM1
M02021_2.00 		Meleagris gallopavo
VTVNKGGYNN
NNRCCMNBAB		 PBM
Weirauch et al.(2014)
pTH8653 		0.804 0.804
GCM2
M02023_2.00 		Taeniopygia guttata
NRTRHKGGYN
NRCCMDYAYN		 PBM
Weirauch et al.(2014)
pTH9341 		0.703 0.703
gcm2
M02024_2.00 		Tetraodon nigroviridis
ATRCGGGY
RCCCGYAT		 PBM
Weirauch et al.(2014)
pTH9386 		0.688 0.688
GCM2
M03067_2.00 		Homo sapiens
NATGCGGGYD
HRCCCGCATN		 SELEX
Jolma et al.(2013)
GCM2_1 		0.688 0.688
GCM2
M04881_2.00 		Homo sapiens
RTGCGGGYN
NRCCCGCAY		 SELEX
Yin et al.(2017)
GCM2_FL_HT-SELEX 		0.688 0.688
GCM2
M10602_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GCMB_Q2 		0.688 0.688
GCM2
M04882_2.00 		Homo sapiens
ATRHKGGYN
NRCCMDYAT		 SELEX
Yin et al.(2017)
GCM2_FL_Methyl-HT-SELEX 		0.688 0.688
ENSTRUG00000003586
M02025_2.00 		Takifugu rubripes
NRTRNGGGYN
NRCCCNYAYN		 PBM
Weirauch et al.(2014)
pTH9357 		0.674 0.674
gcm2
M02026_2.00 		Drosophila melanogaster
ATGCGGGY
RCCCGCAT		 PBM
Weirauch et al.(2014)
pTH8361 		0.630 0.630
gcm2
M03767_2.00 		Drosophila melanogaster
NATGCGGGYNNNRCCCGCATN
NATGCGGGYNNNRCCCGCATN		 SELEX
Nitta et al.(2015)
gcm2_1 		0.630 0.630
gcm2
M03768_2.00 		Drosophila melanogaster
BATGCKGGTACCMGCATV
BATGCKGGTACCMGCATV		 SELEX
Nitta et al.(2015)
gcm2_2 		0.630 0.630
gcm
M03764_2.00 		Drosophila melanogaster
HATGCGGGYVVBRCCCGCATV
BATGCGGGYVBBRCCCGCATD		 SELEX
Nitta et al.(2015)
gcm_1 		0.609 0.609
gcm
M03765_2.00 		Drosophila melanogaster
VATGCKGGYRCCMGCATV
BATGCKGGYRCCMGCATB		 SELEX
Nitta et al.(2015)
gcm_2 		0.609 0.609
gcm
M03766_2.00 		Drosophila melanogaster
YATGCGGGTACCAGCATV
BATGCTGGTACCCGCATR		 SELEX
Nitta et al.(2015)
gcm_3 		0.609 0.609
gcm
M10605_2.00 		Drosophila melanogaster
NDNATGCGGGYNB
VNRCCCGCATNHN		 Transfac
Matys et al.(2006)
I$GCM_01 		0.609 0.609
For this family, TFs with SR scores > 0.607 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AAH43988 GCM 38 175

Links

Other GCM family TFs
Other Xenopus laevis TFs

185 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSPSIG00000013518 Pelodiscus sinensis ENSPSIG00000013518 I 0.855
ENSAMEG00000005755 Ailuropoda melanoleuca ENSAMEG00000005755 I 0.841
ENSMPUG00000008870 Mustela putorius furo ENSMPUG00000008870 I 0.833
GCM1 Canis familiaris ENSCAFG00000002273 I 0.833
GCM1 Monodelphis domestica ENSMODG00000018803 I 0.833
ENSSHAG00000015905 Sarcophilus harrisii ENSSHAG00000015905 I 0.833
GCM1 Loxodonta africana ENSLAFG00000012093 I 0.833
GCM1 Felis catus ENSFCAG00000009490 I 0.833
GCM1 Dasypus novemcinctus ENSDNOG00000016682 I 0.826
XP_004449939.1 Dasypus novemcinctus XP_004449939.1 D 0.826
ENSCPOG00000006856 Cavia porcellus ENSCPOG00000006856 I 0.826
ENSMEUG00000004103 Macropus eugenii ENSMEUG00000004103 I 0.826
Gcm1 Mus musculus ENSMUSG00000023333 D 0.826
ENSSSCG00000002630 Sus scrofa ENSSSCG00000002630 I 0.826
ENSBTAP00000010709-D1 Bos grunniens ENSBTAP00000010709-D1 I 0.819
ENSCSAG00000013148 Chlorocebus sabaeus ENSCSAG00000013148 I 0.819
ENSP00000259803 Macaca fascicularis ENSP00000259803 I 0.819
GCM1 Homo sapiens ENSG00000137270 D 0.819
GCM1 Gorilla gorilla ENSGGOG00000006527 I 0.819
ENSNLEG00000003544 Nomascus leucogenys ENSNLEG00000003544 I 0.819
Gcm1 Rattus norvegicus ENSRNOG00000007932 D 0.819
GCM1 Macaca mulatta ENSMMUG00000022083 I 0.819
ENSOARG00000015312 Ovis aries ENSOARG00000015312 I 0.819
GCM1 Pan troglodytes ENSPTRG00000018288 I 0.819
GCM1 Bos taurus ENSBTAG00000008148 I 0.819
GCM1 Callithrix jacchus ENSCJAG00000011189 I 0.819
ENSPPYG00000016719 Pongo abelii ENSPPYG00000016719 I 0.819
ENSSTOG00000022342 Ictidomys tridecemlineatus ENSSTOG00000022342 I 0.812
GCM1 Pteropus vampyrus ENSPVAG00000013341 I 0.812
GCM1 Tursiops truncatus ENSTTRG00000015250 I 0.812
GCM1 Vicugna pacos ENSVPAG00000006379 I 0.812
GCM1 Myotis lucifugus ENSMLUG00000002762 I 0.812
Myotis_brandtii_Gcm1_10005135 Myotis brandtii Myotis_brandtii_Gcm1_10005135 I 0.812
ENSAPLG00000004160 Anas platyrhynchos ENSAPLG00000004160 I 0.804
GCM1 Equus caballus ENSECAG00000014228 I 0.804
GCM1 Meleagris gallopavo ENSMGAG00000013927 D 0.804
GCM1 Otolemur garnettii ENSOGAG00000007879 I 0.804
ENSFALG00000001854 Ficedula albicollis ENSFALG00000001854 I 0.804
Pvit_03812 Pogona vitticeps Pvit_03812 I 0.804
Gfo_R013721 Geospiza fortis Gfo_R013721 I 0.797
Tal_R009935 Tyto alba Tal_R009935 I 0.797
GCM1 Gallus gallus ENSGALG00000016316 I 0.797
Aan_R001196 Calypte anna Aan_R001196 I 0.797
GCM1 Oryctolagus cuniculus ENSOCUG00000009246 I 0.794
ENSMICG00000002274 Microcebus murinus ENSMICG00000002274 I 0.790
ENSTSYG00000000507 Tarsius syrichta ENSTSYG00000000507 I 0.790
ENSTGUG00000012867 Taeniopygia guttata ENSTGUG00000012867 I 0.790
Gcm1 Dipodomys ordii ENSDORG00000003627 I 0.790
ENSLACG00000003372 Latimeria chalumnae ENSLACG00000003372 I 0.790
Afo_R000272 Aptenodytes forsteri Afo_R000272 I 0.783
Brh_R000788 Buceros rhinoceros Brh_R000788 I 0.783
ENSLOCG00000016883 Lepisosteus oculatus ENSLOCG00000016883 I 0.754
ENSETEG00000005181 Echinops telfairi ENSETEG00000005181 I 0.746
ENSSTOG00000014763 Ictidomys tridecemlineatus ENSSTOG00000014763 I 0.739
Alligator_sinensis_CCG000160.1 Alligator sinensis Alligator_sinensis_CCG000160.1 I 0.725
Pvit_11235 Pogona vitticeps Pvit_11235 I 0.717
gcm2 Danio rerio ENSDARG00000045413 I 0.710
GCM2 Anolis carolinensis ENSACAG00000008677 I 0.710
Brh_R007088 Buceros rhinoceros Brh_R007088 I 0.710
Aan_R001550 Calypte anna Aan_R001550 I 0.703
ENSPSIG00000004698 Pelodiscus sinensis ENSPSIG00000004698 I 0.703
ENSFALG00000013344 Ficedula albicollis ENSFALG00000013344 I 0.703
GCM2 Gallus gallus ENSGALG00000012768 I 0.703
ENSPFOG00000008781 Poecilia formosa ENSPFOG00000008781 I 0.703
ENSAPLG00000002817 Anas platyrhynchos ENSAPLG00000002817 I 0.703
GCM2 Taeniopygia guttata ENSTGUG00000005756 D 0.703
Afo_R013226 Aptenodytes forsteri Afo_R013226 I 0.703
Gfo_R006501 Geospiza fortis Gfo_R006501 I 0.703
GCM2 Meleagris gallopavo ENSMGAG00000003533 I 0.696
ENSLOCG00000013145 Lepisosteus oculatus ENSLOCG00000013145 I 0.696
ENSXMAG00000002726 Xiphophorus maculatus ENSXMAG00000002726 I 0.696
ENSAMXG00000006073 Astyanax mexicanus ENSAMXG00000006073 I 0.696
ENSPMAG00000009211 Petromyzon marinus ENSPMAG00000009211 I 0.696
GCM2 Ornithorhynchus anatinus ENSOANG00000007191 I 0.696
ENSONIG00000009885 Oreochromis niloticus ENSONIG00000009885 I 0.696
gcm2.S Xenopus laevis XB-GENE-866131 I 0.696
ENSOARG00000015521 Ovis aries ENSOARG00000015521 I 0.696
Alligator_sinensis_CCG008975.1 Alligator sinensis Alligator_sinensis_CCG008975.1 I 0.696
ENSSHAG00000010590 Sarcophilus harrisii ENSSHAG00000010590 I 0.696
ENSPPYG00000016228 Pongo abelii ENSPPYG00000016228 I 0.688
ENSMICG00000004238 Microcebus murinus ENSMICG00000004238 I 0.688
GCM2 Homo sapiens ENSG00000124827 D 0.688
ENSP00000368805-D1 Bos grunniens ENSP00000368805-D1 I 0.688
gcm2 Oryzias latipes ENSORLG00000019715 I 0.688
ENSTSYG00000006813 Tarsius syrichta ENSTSYG00000006813 I 0.688
gcm2 Tetraodon nigroviridis ENSTNIG00000005042 D 0.688
GCM2 Gorilla gorilla ENSGGOG00000023360 I 0.688
gcm2 Xenopus tropicalis XB-GENE-492156 I 0.688
Cmyd_10006831 Chelonia mydas Cmyd_10006831 I 0.688
GCM2 Bos taurus ENSBTAG00000018787 I 0.688
ENSPANG00000026314 Papio anubis ENSPANG00000026314 I 0.688
GCM2 Tursiops truncatus ENSTTRG00000003674 I 0.681
GCM2 Tupaia belangeri ENSTBEG00000006181 I 0.681
GCM2 Oryctolagus cuniculus ENSOCUG00000017698 I 0.681
GCM2 Callithrix jacchus ENSCJAG00000019182 I 0.681
GCM2 Monodelphis domestica ENSMODG00000010371 I 0.681
GCM2 Macaca mulatta ENSMMUG00000007719 I 0.681
GCM2 Cavia porcellus ENSCPOG00000011254 I 0.681
ENSCSAG00000007467 Chlorocebus sabaeus ENSCSAG00000007467 I 0.681
ENSLACG00000009363 Latimeria chalumnae ENSLACG00000009363 I 0.681
GCM2 Canis familiaris ENSCAFG00000009747 I 0.681
GCM2 Equus caballus ENSECAG00000017632 I 0.681
GCM1 Ochotona princeps ENSOPRG00000003290 I 0.681
ENSP00000368805 Macaca fascicularis ENSP00000368805 I 0.681
ENSNLEG00000000645 Nomascus leucogenys ENSNLEG00000000645 I 0.681
gcm2 Gasterosteus aculeatus ENSGACG00000001157 I 0.681
GCM2 Felis catus ENSFCAG00000001608 I 0.674
GCM2 Loxodonta africana ENSLAFG00000007475 I 0.674
ENSTRUG00000003586 Takifugu rubripes ENSTRUG00000003586 D 0.674
GCM2 Pan troglodytes ENSPTRG00000017724 I 0.674
GCM2 Otolemur garnettii ENSOGAG00000012176 I 0.674
Gcm2 Mus musculus ENSMUSG00000021362 I 0.674
ENSMPUG00000000633 Mustela putorius furo ENSMPUG00000000633 I 0.674
ENSACAG00000008561 Anolis carolinensis ENSACAG00000008561 I 0.674
Gcm2 Rattus norvegicus ENSRNOG00000015008 I 0.667
GCM2 Procavia capensis ENSPCAG00000011887 I 0.667
GCM2 Ochotona princeps ENSOPRG00000012641 I 0.667
GCM2 Choloepus hoffmanni ENSCHOG00000011562 I 0.667
ENSAMEG00000002669 Ailuropoda melanoleuca ENSAMEG00000002669 I 0.667
GCM2 Vicugna pacos ENSVPAG00000003006 I 0.667
ENSGMOG00000012709 Gadus morhua ENSGMOG00000012709 I 0.667
ENSSTOG00000009563 Ictidomys tridecemlineatus ENSSTOG00000009563 I 0.659
GCM2 Dasypus novemcinctus ENSDNOG00000003701 I 0.659
GCM2 Myotis lucifugus ENSMLUG00000004637 I 0.659
Ogr12931 Ophisaurus gracilis Ogr12931 I 0.645
CGI_10019940 Crassostrea gigas CGI_10019940 I 0.645
Ocbimv22027544m.g Octopus bimaculoides Ocbimv22027544m.g I 0.645
GCM2 Pteropus vampyrus ENSPVAG00000004876 I 0.645
BGLB002570 Biomphalaria glabrata BGLB002570 I 0.638
YQE_03062 Dendroctonus ponderosae YQE_03062 I 0.638
AAEL000623 Aedes aegypti AAEL000623 I 0.638
L798_07938 Zootermopsis nevadensis L798_07938 I 0.638
AFUN009837 Anopheles funestus AFUN009837 I 0.638
GG10041 Drosophila erecta FBgn0102353 I 0.630
BGIBMGA006182 Bombyx mori BGIBMGA006182 I 0.630
AGAP007783 Anopheles gambiae AGAP007783 I 0.630
GM17569 Drosophila sechellia FBgn0172477 I 0.630
AMAM003661 Anopheles maculatus AMAM003661 I 0.630
LDEC012509 Leptinotarsa decemlineata LDEC012509 I 0.630
AMIN006368 Anopheles minimus AMIN006368 I 0.630
GF22779 Drosophila ananassae FBgn0099773 I 0.630
AQUA003642 Anopheles quadriannulatus AQUA003642 I 0.630
MDOA003644 Musca domestica MDOA003644 I 0.630
HMEL005671 Heliconius melpomene HMEL005671 I 0.630
AEPI007160 Anopheles epiroticus AEPI007160 I 0.630
ACHR001414 Anopheles christyi ACHR001414 I 0.630
ASTEI01672 Anopheles stephensi ASTEI01672 I 0.630
ACUA009622 Anopheles culicifacies ACUA009622 I 0.630
gcm2 Drosophila melanogaster FBgn0019809 D 0.630
MCINX011946 Melitaea cinxia MCINX011946 I 0.630
KGM_05743 Danaus plexippus KGM_05743 I 0.629
ADIR000711 Anopheles dirus ADIR000711 I 0.623
AFAF005680 Anopheles farauti AFAF005680 I 0.623
ACEP23384 Atta cephalotes ACEP23384 I 0.623
TC014730 Tribolium castaneum TC014730 I 0.623
GE18856 Drosophila yakuba FBgn0236239 I 0.623
AARA011980 Anopheles arabiensis AARA011980 I 0.623
AALB008012 Anopheles albimanus AALB008012 I 0.616
LCUP008083 Lucilia cuprina LCUP008083 I 0.616
AATE008476 Anopheles atroparvus AATE008476 I 0.616
Sakowv30018670m.g Saccoglossus kowalevskii Sakowv30018670m.g I 0.616
Cflo_04549--XP_393815.2_APIME Camponotus floridanus Cflo_04549--XP_393815.2_APIME I 0.616
PHUM436840 Pediculus humanus PHUM436840 I 0.616
GK23867 Drosophila willistoni FBgn0225829 I 0.616
GJ18313 Drosophila virilis FBgn0205472 I 0.616
fgenesh2_pg.scaffold_122000051 Branchiostoma floridae fgenesh2_pg.scaffold_122000051 I 0.616
SINV21711 Solenopsis invicta SINV21711 I 0.616
GH10675 Drosophila grimshawi FBgn0118156 I 0.616
ASIS002985 Anopheles sinensis ASIS002985 I 0.616
CPIJ006640 Culex quinquefasciatus CPIJ006640 I 0.614
GB45031 Apis mellifera GB45031 I 0.614
CpipJ_CPIJ006640 Culex pipiens CpipJ_CPIJ006640 I 0.614
PPAI003635 Phlebotomus papatasi PPAI003635 I 0.609
GG24019 Drosophila erecta FBgn0116158 I 0.609
GF21907 Drosophila ananassae FBgn0098907 I 0.609
tetur09g06060 Tetranychus urticae tetur09g06060 I 0.609
GE10457 Drosophila yakuba FBgn0228318 I 0.609
GK23810 Drosophila willistoni FBgn0225772 I 0.609
GA17734 Drosophila pseudoobscura FBgn0077744 I 0.609
gcm Drosophila melanogaster FBgn0014179 D 0.609
CLEC013329 Cimex lectularius CLEC013329 I 0.609
GCM1 Erinaceus europaeus ENSEEUG00000013606 I 0.609
GL18919 Drosophila persimilis FBgn0156520 I 0.609
GM12386 Drosophila sechellia FBgn0167323 I 0.609
AALB008013 Anopheles albimanus AALB008013 I 0.609