GCM1 (Ochotona princeps)
GCM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03615 (GCM) IPR003902 ENSOPRG00000003290 T198036_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Gcm1
M00168_2.00 		Mus musculus
NVTRVGGGY
RCCCBYABN		 PBM
Badis et al.(2009)
Gcm1_3732 		0.924 0.924
Gcm1
M02022_2.00 		Rattus norvegicus
NNRTRVGGGY
RCCCBYAYNN		 PBM
Weirauch et al.(2014)
pTH9283 		0.915 0.915
GCM1
M02020_2.00 		Homo sapiens
NVTVNGGGN
NCCCNBABN		 PBM
Weirauch et al.(2014)
pTH7965 		0.890 0.890
XP_004449939.1
M02027_2.00 		Dasypus novemcinctus
RTRSGGGY
RCCCSYAY		 PBM
Weirauch et al.(2014)
pTH9259 		0.890 0.890
GCM1
M03068_2.00 		Homo sapiens
BATGCGGGTR
YACCCGCATV		 SELEX
Jolma et al.(2013)
GCM1_1 		0.890 0.890
GCM1
M03069_2.00 		Homo sapiens
RTRYKGGYRCCMGYAN
NTRCKGGYRCCMRYAY		 SELEX
Jolma et al.(2013)
GCM1_2 		0.890 0.890
GCM1
M03070_2.00 		Homo sapiens
BATGCGGGTRS
SYACCCGCATV		 SELEX
Jolma et al.(2013)
GCM1_3 		0.890 0.890
GCM1
M04883_2.00 		Homo sapiens
RTGSGGGBV
BVCCCSCAY		 SELEX
Yin et al.(2017)
GCM1_eDBD_HT-SELEX 		0.890 0.890
GCM1
M05868_2.00 		Homo sapiens
ATGCGGGYV
BRCCCGCAT		 SMiLE-seq
Isakova et al.(2017)
GCM1 		0.890 0.890
GCM1
M10603_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GCMA_Q4 		0.890 0.890
GCM1
M10604_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GCM_Q2 		0.890 0.890
GCM1
M04884_2.00 		Homo sapiens
ATRNKGGYV
BRCCMNYAT		 SELEX
Yin et al.(2017)
GCM1_eDBD_Methyl-HT-SELEX 		0.890 0.890
GCM1
M02021_2.00 		Meleagris gallopavo
VTVNKGGYNN
NNRCCMNBAB		 PBM
Weirauch et al.(2014)
pTH8653 		0.847 0.847
GCM2
M02023_2.00 		Taeniopygia guttata
NRTRHKGGYN
NRCCMDYAYN		 PBM
Weirauch et al.(2014)
pTH9341 		0.720 0.720
ENSTRUG00000003586
M02025_2.00 		Takifugu rubripes
NRTRNGGGYN
NRCCCNYAYN		 PBM
Weirauch et al.(2014)
pTH9357 		0.695 0.695
GCM2
M03067_2.00 		Homo sapiens
NATGCGGGYD
HRCCCGCATN		 SELEX
Jolma et al.(2013)
GCM2_1 		0.695 0.695
GCM2
M04881_2.00 		Homo sapiens
RTGCGGGYN
NRCCCGCAY		 SELEX
Yin et al.(2017)
GCM2_FL_HT-SELEX 		0.695 0.695
GCM2
M10602_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GCMB_Q2 		0.695 0.695
GCM2
M04882_2.00 		Homo sapiens
ATRHKGGYN
NRCCMDYAT		 SELEX
Yin et al.(2017)
GCM2_FL_Methyl-HT-SELEX 		0.695 0.695
gcm2
M02024_2.00 		Tetraodon nigroviridis
ATRCGGGY
RCCCGYAT		 PBM
Weirauch et al.(2014)
pTH9386 		0.686 0.686
gcm2
M02026_2.00 		Drosophila melanogaster
ATGCGGGY
RCCCGCAT		 PBM
Weirauch et al.(2014)
pTH8361 		0.627 0.627
gcm2
M03767_2.00 		Drosophila melanogaster
NATGCGGGYNNNRCCCGCATN
NATGCGGGYNNNRCCCGCATN		 SELEX
Nitta et al.(2015)
gcm2_1 		0.627 0.627
gcm2
M03768_2.00 		Drosophila melanogaster
BATGCKGGTACCMGCATV
BATGCKGGTACCMGCATV		 SELEX
Nitta et al.(2015)
gcm2_2 		0.627 0.627
For this family, TFs with SR scores > 0.607 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSOPRP00000003009 GCM 28 152

Links

Other GCM family TFs
Other Ochotona princeps TFs

105 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSSHAG00000015905 Sarcophilus harrisii ENSSHAG00000015905 I 0.915
GCM1 Erinaceus europaeus ENSEEUG00000013606 I 0.902
Gcm1 Dipodomys ordii ENSDORG00000003627 I 0.898
GCM1 Otolemur garnettii ENSOGAG00000007879 I 0.898
ENSAMEG00000005755 Ailuropoda melanoleuca ENSAMEG00000005755 I 0.890
GCM1 Pteropus vampyrus ENSPVAG00000013341 I 0.890
GCM1 Dasypus novemcinctus ENSDNOG00000016682 I 0.890
XP_004449939.1 Dasypus novemcinctus XP_004449939.1 D 0.890
ENSSTOG00000014763 Ictidomys tridecemlineatus ENSSTOG00000014763 I 0.886
Brh_R000788 Buceros rhinoceros Brh_R000788 I 0.864
ENSTGUG00000012867 Taeniopygia guttata ENSTGUG00000012867 I 0.856
Gfo_R013721 Geospiza fortis Gfo_R013721 I 0.856
GCM1 Tursiops truncatus ENSTTRG00000015250 I 0.856
Afo_R000272 Aptenodytes forsteri Afo_R000272 I 0.847
Aan_R001196 Calypte anna Aan_R001196 I 0.847
GCM1 Meleagris gallopavo ENSMGAG00000013927 D 0.847
Gcm1 Mus musculus ENSMUSG00000023333 D 0.790
Alligator_sinensis_CCG000160.1 Alligator sinensis Alligator_sinensis_CCG000160.1 I 0.785
Gcm1 Rattus norvegicus ENSRNOG00000007932 D 0.783
GCM1 Monodelphis domestica ENSMODG00000018803 I 0.783
ENSMEUG00000004103 Macropus eugenii ENSMEUG00000004103 I 0.775
ENSOARG00000015312 Ovis aries ENSOARG00000015312 I 0.775
ENSBTAP00000010709-D1 Bos grunniens ENSBTAP00000010709-D1 I 0.775
GCM1 Bos taurus ENSBTAG00000008148 I 0.775
GCM1 Canis familiaris ENSCAFG00000002273 I 0.768
GCM1 Equus caballus ENSECAG00000014228 I 0.768
ENSSTOG00000022342 Ictidomys tridecemlineatus ENSSTOG00000022342 I 0.768
ENSCPOG00000006856 Cavia porcellus ENSCPOG00000006856 I 0.768
ENSMPUG00000008870 Mustela putorius furo ENSMPUG00000008870 I 0.768
GCM1 Felis catus ENSFCAG00000009490 I 0.768
GCM1 Oryctolagus cuniculus ENSOCUG00000009246 I 0.766
GCM1 Gorilla gorilla ENSGGOG00000006527 I 0.761
GCM1 Homo sapiens ENSG00000137270 D 0.761
GCM1 Callithrix jacchus ENSCJAG00000011189 I 0.761
ENSCSAG00000013148 Chlorocebus sabaeus ENSCSAG00000013148 I 0.761
GCM1 Pan troglodytes ENSPTRG00000018288 I 0.761
ENSPPYG00000016719 Pongo abelii ENSPPYG00000016719 I 0.761
GCM1 Macaca mulatta ENSMMUG00000022083 I 0.761
ENSNLEG00000003544 Nomascus leucogenys ENSNLEG00000003544 I 0.761
ENSP00000259803 Macaca fascicularis ENSP00000259803 I 0.761
ENSMICG00000002274 Microcebus murinus ENSMICG00000002274 I 0.754
GCM1 Vicugna pacos ENSVPAG00000006379 I 0.750
Myotis_brandtii_Gcm1_10005135 Myotis brandtii Myotis_brandtii_Gcm1_10005135 I 0.746
GCM1 Loxodonta africana ENSLAFG00000012093 I 0.746
GCM1 Myotis lucifugus ENSMLUG00000002762 I 0.746
gcm2 Danio rerio ENSDARG00000045413 I 0.746
ENSSSCG00000002630 Sus scrofa ENSSSCG00000002630 I 0.746
GCM2 Anolis carolinensis ENSACAG00000008677 I 0.737
ENSPSIG00000013518 Pelodiscus sinensis ENSPSIG00000013518 I 0.732
ENSFALG00000001854 Ficedula albicollis ENSFALG00000001854 I 0.725
ENSAPLG00000004160 Anas platyrhynchos ENSAPLG00000004160 I 0.725
GCM2 Gallus gallus ENSGALG00000012768 I 0.720
Gfo_R006501 Geospiza fortis Gfo_R006501 I 0.720
ENSPMAG00000009211 Petromyzon marinus ENSPMAG00000009211 I 0.720
Afo_R013226 Aptenodytes forsteri Afo_R013226 I 0.720
ENSFALG00000013344 Ficedula albicollis ENSFALG00000013344 I 0.720
Tal_R009935 Tyto alba Tal_R009935 I 0.717
GCM1 Gallus gallus ENSGALG00000016316 I 0.717
gcm2 Xenopus tropicalis XB-GENE-492156 I 0.712
ENSAMXG00000006073 Astyanax mexicanus ENSAMXG00000006073 I 0.712
Pvit_03812 Pogona vitticeps Pvit_03812 I 0.710
ENSTSYG00000000507 Tarsius syrichta ENSTSYG00000000507 I 0.703
Cmyd_10006831 Chelonia mydas Cmyd_10006831 I 0.703
GCM2 Oryctolagus cuniculus ENSOCUG00000017698 I 0.703
GCM2 Callithrix jacchus ENSCJAG00000019182 I 0.695
ENSACAG00000008561 Anolis carolinensis ENSACAG00000008561 I 0.695
ENSTRUG00000003586 Takifugu rubripes ENSTRUG00000003586 D 0.695
ENSNLEG00000000645 Nomascus leucogenys ENSNLEG00000000645 I 0.695
ENSOARG00000015521 Ovis aries ENSOARG00000015521 I 0.695
GCM2 Ornithorhynchus anatinus ENSOANG00000007191 I 0.686
ENSTSYG00000006813 Tarsius syrichta ENSTSYG00000006813 I 0.686
GCM2 Felis catus ENSFCAG00000001608 I 0.686
gcm1.S Xenopus laevis XB-GENE-6252686 I 0.681
GCM2 Otolemur garnettii ENSOGAG00000012176 I 0.678
GCM2 Tursiops truncatus ENSTTRG00000003674 I 0.678
ENSAMEG00000002669 Ailuropoda melanoleuca ENSAMEG00000002669 I 0.678
GCM2 Equus caballus ENSECAG00000017632 I 0.678
GCM2 Echinops telfairi ENSETEG00000012473 I 0.669
GCM2 Loxodonta africana ENSLAFG00000007475 I 0.661
GCM2 Pteropus vampyrus ENSPVAG00000004876 I 0.653
ENSETEG00000005181 Echinops telfairi ENSETEG00000005181 I 0.645
ENSLOCG00000016883 Lepisosteus oculatus ENSLOCG00000016883 I 0.638
GJ18313 Drosophila virilis FBgn0205472 I 0.636
ENSLACG00000003372 Latimeria chalumnae ENSLACG00000003372 I 0.630
Ogr12931 Ophisaurus gracilis Ogr12931 I 0.629
gcm2 Drosophila melanogaster FBgn0019809 D 0.627
GG10041 Drosophila erecta FBgn0102353 I 0.627
GF22779 Drosophila ananassae FBgn0099773 I 0.627
Brh_R007088 Buceros rhinoceros Brh_R007088 I 0.623
HMEL005671 Heliconius melpomene HMEL005671 I 0.619
Pvit_11235 Pogona vitticeps Pvit_11235 I 0.616
ENSAPLG00000002817 Anas platyrhynchos ENSAPLG00000002817 I 0.616
GCM2 Meleagris gallopavo ENSMGAG00000003533 I 0.616
GCM2 Taeniopygia guttata ENSTGUG00000005756 D 0.616
ENSLACG00000009363 Latimeria chalumnae ENSLACG00000009363 I 0.616
ENSPSIG00000004698 Pelodiscus sinensis ENSPSIG00000004698 I 0.616
Aan_R001550 Calypte anna Aan_R001550 I 0.616
Alligator_sinensis_CCG008975.1 Alligator sinensis Alligator_sinensis_CCG008975.1 I 0.616
AMIN006368 Anopheles minimus AMIN006368 I 0.610
AQUA003642 Anopheles quadriannulatus AQUA003642 I 0.610
GK23867 Drosophila willistoni FBgn0225829 I 0.610
YQE_03062 Dendroctonus ponderosae YQE_03062 I 0.610
AGAP007783 Anopheles gambiae AGAP007783 I 0.610
gcm2.S Xenopus laevis XB-GENE-866131 I 0.609
gw.285.88.1 Branchiostoma floridae gw.285.88.1 I 0.608