SMRZ_0001689701 (Schistosoma margrebowiei)
GCM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03615 (GCM) IPR003902 SMRZ_0001689701 T198259_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
gcm
M03764_2.00 		Drosophila melanogaster
HATGCGGGYVVBRCCCGCATV
BATGCGGGYVBBRCCCGCATD		 SELEX
Nitta et al.(2015)
gcm_1 		0.664 0.664
gcm
M03765_2.00 		Drosophila melanogaster
VATGCKGGYRCCMGCATV
BATGCKGGYRCCMGCATB		 SELEX
Nitta et al.(2015)
gcm_2 		0.664 0.664
gcm
M03766_2.00 		Drosophila melanogaster
YATGCGGGTACCAGCATV
BATGCTGGTACCCGCATR		 SELEX
Nitta et al.(2015)
gcm_3 		0.664 0.664
gcm
M10605_2.00 		Drosophila melanogaster
NDNATGCGGGYNB
VNRCCCGCATNHN		 Transfac
Matys et al.(2006)
I$GCM_01 		0.664 0.664
For this family, TFs with SR scores > 0.607 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SMRZ_0001689701-mRNA-1 GCM 248 385

Links

Other GCM family TFs
Other Schistosoma margrebowiei TFs

31 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AGABI2DRAFT_175940 Agaricus bisporus AGABI2DRAFT_175940 N
M378DRAFT_491257 Amanita muscaria M378DRAFT_491257 N
BOTBODRAFT_37928 Botryobasidium botryosum BOTBODRAFT_37928 N
CERSUDRAFT_42528 Ceriporiopsis subvermispora CERSUDRAFT_42528 N
FIBRA_04047 Fibroporia radiculosa FIBRA_04047 N
FOMPIDRAFT_125581 Fomitopsis pinicola FOMPIDRAFT_125581 N
GALMADRAFT_233562 Galerina marginata GALMADRAFT_233562 N
GLOTRDRAFT_68769 Gloeophyllum trabeum GLOTRDRAFT_68769 N
M413DRAFT_62612 Hebeloma cylindrosporum M413DRAFT_62612 N
estExt_Genewise1Plus.C_11260 Heterobasidion annosum estExt_Genewise1Plus.C_11260 N
HETIRDRAFT_378035 Heterobasidion irregulare HETIRDRAFT_378035 N
JAAARDRAFT_203134 Jaapia argillacea JAAARDRAFT_203134 N
K443DRAFT_129546 Laccaria amethystina K443DRAFT_129546 N
LACBIDRAFT_291485 Laccaria bicolor LACBIDRAFT_291485 N
Moror_13254 Moniliophthora roreri Moror_13254 N
PAXRUDRAFT_828087 Paxillus rubicundulus PAXRUDRAFT_828087 N
PHACADRAFT_247347 Phanerochaete carnosa PHACADRAFT_247347 N
fgenesh1_pg.C_scaffold_11000407 Phanerochaete chrysosporium fgenesh1_pg.C_scaffold_11000407 N
PHLGIDRAFT_124398 Phlebiopsis gigantea PHLGIDRAFT_124398 N
PILCRDRAFT_66498 Piloderma croceum PILCRDRAFT_66498 N
PISMIDRAFT_91000 Pisolithus microcarpus PISMIDRAFT_91000 N
M404DRAFT_343922 Pisolithus tinctorius M404DRAFT_343922 N
PLEOSDRAFT_1092294 Pleurotus ostreatus PLEOSDRAFT_1092294 N
POSPLDRAFT_95382 Postia placenta POSPLDRAFT_95382 N
V565_023640 Rhizoctonia solani V565_023640 N
SCHCODRAFT_255490 Schizophyllum commune SCHCODRAFT_255490 N
SCLCIDRAFT_14549 Scleroderma citrinum SCLCIDRAFT_14549 N
M422DRAFT_38503 Sphaerobolus stellatus M422DRAFT_38503 N
CY34DRAFT_798859 Suillus luteus CY34DRAFT_798859 N