Afo_R002230 (Aptenodytes forsteri)
Grainyhead

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04516 (CP2) IPR007604 Afo_R002230 T199493_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GRHL2
M08129_2.00 		Homo sapiens
NNNAACTGGTTTNNN
NNNAAACCAGTTNNN		 ChIP-seq
Mathelier et al.(2014)
MA1105.1 		0.950 0.950
GRHL2
M09125_2.00 		Homo sapiens
AACYDGYYBDDC
GHHVRRCHRGTT		 Misc
Kulakovskiy et al.(2013)
GRHL2_HUMAN.H11MO.0.A 		0.950 0.950
GRHL2
M09558_2.00 		Homo sapiens
NRAACHDGHHDDDCHDGTTY
RAACHDGHHHDDCHDGTTYN		 Misc
Heinz et al.(2010)
HBE-GRHL2_GSE46194 		0.950 0.950
Grhl2
M09126_2.00 		Mus musculus
RDCCDGTYYKDC
GHMRRACHGGHY		 Misc
Kulakovskiy et al.(2013)
GRHL2_MOUSE.H11MO.0.A 		0.941 0.941
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Afo_R002230 Grainyhead 202 426

Links

Other Grainyhead family TFs
Other Aptenodytes forsteri TFs

82 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
fgenesh2_kg.8__1627__AT5G57150.1 Arabidopsis lyrata fgenesh2_kg.8__1627__AT5G57150.1 N
fgenesh2_kg.7__1196__AT4G29930.1 Arabidopsis lyrata fgenesh2_kg.7__1196__AT4G29930.1 N
AT5G57150 Arabidopsis thaliana AT5G57150 N
BHLH27 Arabidopsis thaliana AT4G29930 N
Bostr.26833s0543 Boechera stricta Bostr.26833s0543 N
Bostr.7867s0840 Boechera stricta Bostr.7867s0840 N
Bo9g130890 Brassica oleracea Bo9g130890 N
Bo7g114110 Brassica oleracea Bo7g114110 N
Bo3g019430 Brassica oleracea Bo3g019430 N
Bo1g014720 Brassica oleracea Bo1g014720 N
Bra002756 Brassica rapa Bra002756 N
Bra006831 Brassica rapa Bra006831 N
Bra011152 Brassica rapa Bra011152 N
Bra020462 Brassica rapa Bra020462 N
Cagra.1569s0024 Capsella grandiflora Cagra.1569s0024 N
Cagra.0268s0010 Capsella grandiflora Cagra.0268s0010 N
Carubv10006422m.g Capsella rubella Carubv10006422m.g N
Thhalv10014506m.g Eutrema salsugineum Thhalv10014506m.g N
Thhalv10027332m.g Eutrema salsugineum Thhalv10027332m.g N
gene23716-v1.0-hybrid Fragaria vesca gene23716-v1.0-hybrid I
Gorai.009G002200 Gossypium raimondii Gorai.009G002200 I
Lus10030880.g Linum usitatissimum Lus10030880.g N
MDP0000243628 Malus domestica MDP0000243628 I
mgf024029m Mimulus guttatus mgf024029m I
mgf018455m Mimulus guttatus mgf018455m I
GSMUA_Achr6G30900_001 Musa acuminata GSMUA_Achr6G30900_001 N
AMS Populus trichocarpa POPTR_0009s13860 I
Pm020879 Prunus mume Pm020879 I
PRUPE_ppa022211mg Prunus persica PRUPE_ppa022211mg I
SapurV1A.0218s0460 Salix purpurea SapurV1A.0218s0460 I