Alligator_sinensis_CCG017490.1 (Alligator sinensis)
Grainyhead

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04516 (CP2) IPR007604 Alligator_sinensis_CCG017490.1 T199503_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GRHL1
M03071_2.00 		Homo sapiens
RACYKGWHNDWCMGGTT
AACCKGWHNDWCMRGTY		 SELEX
Jolma et al.(2013)
GRHL1_1 		0.815 0.815
GRHL1
M03072_2.00 		Homo sapiens
DAACCGGTTH
DAACCGGTTH		 SELEX
Jolma et al.(2013)
GRHL1_2 		0.815 0.815
GRHL1
M03073_2.00 		Homo sapiens
HWAACCGGTTTD
HAAACCGGTTWD		 SELEX
Jolma et al.(2013)
GRHL1_3 		0.815 0.815
GRHL1
M04887_2.00 		Homo sapiens
DAACCGGTTH
DAACCGGTTH		 SELEX
Yin et al.(2017)
GRHL1_eDBD_HT-SELEX 		0.815 0.815
GRHL1
M04888_2.00 		Homo sapiens
DAACMKGTTH
DAACMKGTTH		 SELEX
Yin et al.(2017)
GRHL1_eDBD_Methyl-HT-SELEX 		0.815 0.815
GRHL2
M08129_2.00 		Homo sapiens
NNNAACTGGTTTNNN
NNNAAACCAGTTNNN		 ChIP-seq
Mathelier et al.(2014)
MA1105.1 		0.774 0.774
GRHL2
M09125_2.00 		Homo sapiens
AACYDGYYBDDC
GHHVRRCHRGTT		 Misc
Kulakovskiy et al.(2013)
GRHL2_HUMAN.H11MO.0.A 		0.774 0.774
Grhl2
M09126_2.00 		Mus musculus
RDCCDGTYYKDC
GHMRRACHGGHY		 Misc
Kulakovskiy et al.(2013)
GRHL2_MOUSE.H11MO.0.A 		0.774 0.774
GRHL2
M09558_2.00 		Homo sapiens
NRAACHDGHHDDDCHDGTTY
RAACHDGHHHDDCHDGTTYN		 Misc
Heinz et al.(2010)
HBE-GRHL2_GSE46194 		0.774 0.774
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG017490.1 Grainyhead 202 343

Links

Other Grainyhead family TFs
Other Alligator sinensis TFs

100 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BRADI5G19190 Brachypodium distachyon BRADI5G19190 N 0.000
MLOC_72117 Hordeum vulgare MLOC_72117 N 0.000
LPERR04G18520 Leersia perrieri LPERR04G18520 N 0.000
OB04G29620 Oryza brachyantha OB04G29620 N 0.000
ORGLA04G0197700 Oryza glaberrima ORGLA04G0197700 N 0.000
OGLUM04G22640 Oryza glumaepatula OGLUM04G22640 N 0.000
BGIOSGA014504 Oryza indica BGIOSGA014504 N 0.000
OMERI04G19030 Oryza meridionalis OMERI04G19030 N 0.000
OMERI02G27200 Oryza meridionalis OMERI02G27200 N 0.000
ONIVA04G21910 Oryza nivara ONIVA04G21910 N 0.000
OPUNC04G20350 Oryza punctata OPUNC04G20350 N 0.000
ORUFI04G24440 Oryza rufipogon ORUFI04G24440 N 0.000
OS04G0580300 Oryza sativa OS04G0580300 N 0.000
Pavir.Ga00626 Panicum virgatum Pavir.Ga00626 N 0.000
Pavir.Gb01009 Panicum virgatum Pavir.Gb01009 N 0.000
Si009601m.g Setaria italica Si009601m.g N 0.000
GRMZM2G173429 Zea mays GRMZM2G173429 N 0.000
GRMZM2G109869 Zea mays GRMZM2G109869 N 0.000