RLT1 (Arabidopsis thaliana)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 AT1G28420 T204455_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RLT1
M02038_2.00		 Arabidopsis thaliana
NDHTCWWN
NWWGADHN		 PBM
Weirauch et al.(2014)
pTH5432		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
For this family, TFs with SR scores > 0.599 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M02038_2.00 Homeodomain 1 57

DNA Binding Domains

Protein ID Domain From To Sequence
AT1G28420.1 Homeodomain 40 96

Links

Other Homeodomain family TFs
Other Arabidopsis thaliana TFs

111 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_19799 Aegilops tauschii F775_19799 N
AMTR_s00011p00256770 Amborella trichopoda AMTR_s00011p00256770 N
Aquca_030_00311 Aquilegia coerulea Aquca_030_00311 N
BRADI4G38000 Brachypodium distachyon BRADI4G38000 N
evm.TU.supercontig_30.114 Carica papaya evm.TU.supercontig_30.114 N
Cla010033 Citrullus lanatus Cla010033 N
Ciclev10015448m.g Citrus clementina Ciclev10015448m.g N
orange1.1g015397m.g Citrus sinensis orange1.1g015397m.g N
Cucsa.048660 Cucumis sativus Cucsa.048660 N
gene19969-v1.0-hybrid Fragaria vesca gene19969-v1.0-hybrid N
GLYMA05G34280 Glycine max GLYMA05G34280 N
GLYMA08G05390 Glycine max GLYMA08G05390 N
Gorai.008G050900 Gossypium raimondii Gorai.008G050900 N
MLOC_57580 Hordeum vulgare MLOC_57580 N
LPERR09G15520 Leersia perrieri LPERR09G15520 N
Lus10038373.g Linum usitatissimum Lus10038373.g N
Lus10036234.g Linum usitatissimum Lus10036234.g N
chr4.CM0042.1850.nd Lotus japonicus chr4.CM0042.1850.nd N
cassava20557.m1 Manihot esculenta cassava20557.m1 N
mgf015709m Mimulus guttatus mgf015709m N
mgf015174m Mimulus guttatus mgf015174m N
mgf011479m Mimulus guttatus mgf011479m N
GSMUA_Achr11G18180_001 Musa acuminata GSMUA_Achr11G18180_001 N
GSMUA_Achr11G13680_001 Musa acuminata GSMUA_Achr11G13680_001 N
GSMUA_Achr10G20960_001 Musa acuminata GSMUA_Achr10G20960_001 N
OBART09G19610 Oryza barthii OBART09G19610 N
OB09G26240 Oryza brachyantha OB09G26240 N
ORGLA09G0158300 Oryza glaberrima ORGLA09G0158300 N
BGIOSGA029268 Oryza indica BGIOSGA029268 N
ONIVA09G20740 Oryza nivara ONIVA09G20740 N
ORUFI10G16430 Oryza rufipogon ORUFI10G16430 N
OS09G0560900 Oryza sativa OS09G0560900 N
POPTR_0003s07180 Populus trichocarpa POPTR_0003s07180 N
POPTR_0001s16080 Populus trichocarpa POPTR_0001s16080 N
Pm010813 Prunus mume Pm010813 N
29994.m000464 Ricinus communis 29994.m000464 N
SapurV1A.0104s0210 Salix purpurea SapurV1A.0104s0210 N
SapurV1A.0273s0180 Salix purpurea SapurV1A.0273s0180 N
SapurV1A.3784s0010 Salix purpurea SapurV1A.3784s0010 N
Solyc02g081620.2 Solanum lycopersicum Solyc02g081620.2 N
PGSC0003DMG401017733 Solanum tuberosum PGSC0003DMG401017733 N
TCM_005999 Theobroma cacao TCM_005999 N
Traes_5BL_6688D6ECE Triticum aestivum Traes_5BL_6688D6ECE N
SUF4 Vitis vinifera VIT_01s0011g01240 N