Bo4g182800 (Brassica oleracea)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 Bo4g182800 T204927_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-9
M06898_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
PHV_col_a 		0.866 0.964
ATHB-9
M02682_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 SELEX
Mathelier et al.(2014)
MA0573.1 		0.866 0.964
ATHB-9
M10623_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 Transfac
Matys et al.(2006)
P$ATHB9_01 		0.866 0.964
ATHB-15
M00864_2.00 		Arabidopsis thaliana
AATAATTACT
AGTAATTATT		 PBM
Franco-Zorrilla et al.(2014)
ICU4 		0.861 0.929
ATHB-15
M06899_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
ATHB15_col_a 		0.861 0.929
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo4g182800.1 Homeodomain 18 77

Links

Other Homeodomain family TFs
Other Brassica oleracea TFs

335 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_03250 Aegilops tauschii F775_03250 N 0.000
fgenesh2_kg.3__2706__AT3G24880.1 Arabidopsis lyrata fgenesh2_kg.3__2706__AT3G24880.1 N 0.000
EAF1A Arabidopsis thaliana AT3G24880 N 0.000
EAF1B Arabidopsis thaliana AT3G24870 N 0.000
Bostr.19424s0133 Boechera stricta Bostr.19424s0133 N 0.000
BRADI2G14372 Brachypodium distachyon BRADI2G14372 N 0.000
BRADI2G41720 Brachypodium distachyon BRADI2G41720 N 0.000
PK23540.1 Cannabis sativa PK23540.1 N 0.000
evm.TU.supercontig_8.144 Carica papaya evm.TU.supercontig_8.144 N 0.000
Cla015187 Citrullus lanatus Cla015187 N 0.000
Ciclev10018446m.g Citrus clementina Ciclev10018446m.g N 0.000
orange1.1g000147m.g Citrus sinensis orange1.1g000147m.g N 0.000
Cucsa.078210 Cucumis sativus Cucsa.078210 N 0.000
Eucgr.H00795 Eucalyptus grandis Eucgr.H00795 N 0.000
gene17608-v1.0-hybrid Fragaria vesca gene17608-v1.0-hybrid N 0.000
GLYMA08G46710 Glycine max GLYMA08G46710 N 0.000
Gorai.007G155000 Gossypium raimondii Gorai.007G155000 N 0.000
MLOC_60761 Hordeum vulgare MLOC_60761 N 0.000
LPERR11G18970 Leersia perrieri LPERR11G18970 N 0.000
chr1.LjT36F23.70.nd Lotus japonicus chr1.LjT36F23.70.nd N 0.000
MDP0000155726 Malus domestica MDP0000155726 N 0.000
MDP0000250529 Malus domestica MDP0000250529 N 0.000
cassava349.valid.m1 Manihot esculenta cassava349.valid.m1 N 0.000
MTR_7g056603 Medicago truncatula MTR_7g056603 N 0.000
GSMUA_Achr1G21080_001 Musa acuminata GSMUA_Achr1G21080_001 N 0.000
OBART08G04660 Oryza barthii OBART08G04660 N 0.000
OBART05G28000 Oryza barthii OBART05G28000 N 0.000
OB05G35500 Oryza brachyantha OB05G35500 N 0.000
OB01G30180 Oryza brachyantha OB01G30180 N 0.000
OGLUM08G04910 Oryza glumaepatula OGLUM08G04910 N 0.000
OGLUM05G29460 Oryza glumaepatula OGLUM05G29460 N 0.000
BGIOSGA017449 Oryza indica BGIOSGA017449 N 0.000
BGIOSGA027556 Oryza indica BGIOSGA027556 N 0.000
OLONG_015531 Oryza longistaminata OLONG_015531 N 0.000
OLONG_007975 Oryza longistaminata OLONG_007975 N 0.000
OMERI08G04670 Oryza meridionalis OMERI08G04670 N 0.000
OMERI05G23880 Oryza meridionalis OMERI05G23880 N 0.000
ONIVA05G29890 Oryza nivara ONIVA05G29890 N 0.000
ONIVA08G04510 Oryza nivara ONIVA08G04510 N 0.000
OPUNC05G25580 Oryza punctata OPUNC05G25580 N 0.000
OPUNC08G04510 Oryza punctata OPUNC08G04510 N 0.000
OPUNC05G25600 Oryza punctata OPUNC05G25600 N 0.000
ORUFI08G05170 Oryza rufipogon ORUFI08G05170 N 0.000
ORUFI05G29980 Oryza rufipogon ORUFI05G29980 N 0.000
OS08G0177300 Oryza sativa OS08G0177300 N 0.000
Pavir.J18859 Panicum virgatum Pavir.J18859 N 0.000
Pavir.J03231 Panicum virgatum Pavir.J03231 N 0.000
Pavir.J00429 Panicum virgatum Pavir.J00429 N 0.000
PDK_20s1355591g002 Phoenix dactylifera PDK_20s1355591g002 N 0.000
POPTR_0002s24490 Populus trichocarpa POPTR_0002s24490 N 0.000
SapurV1A.0342s0100 Salix purpurea SapurV1A.0342s0100 N 0.000
SapurV1A.0135s0340 Salix purpurea SapurV1A.0135s0340 N 0.000
Si020947m.g Setaria italica Si020947m.g N 0.000
Si000015m.g Setaria italica Si000015m.g N 0.000
Solyc06g083420.1 Solanum lycopersicum Solyc06g083420.1 N 0.000
Sb03g025920 Sorghum bicolor Sb03g025920 N 0.000
TCM_002924 Theobroma cacao TCM_002924 N 0.000
Traes_1DL_7773A9BFB Triticum aestivum Traes_1DL_7773A9BFB N 0.000
Traes_3DL_FC1A52B36 Triticum aestivum Traes_3DL_FC1A52B36 N 0.000
TRIUR3_17785 Triticum urartu TRIUR3_17785 N 0.000
TRIUR3_27363 Triticum urartu TRIUR3_27363 N 0.000
VIT_07s0005g06680 Vitis vinifera VIT_07s0005g06680 N 0.000
GRMZM2G350684 Zea mays GRMZM2G350684 N 0.000
GRMZM2G018048 Zea mays GRMZM2G018048 N 0.000