Bo9g104880 (Brassica oleracea)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 Bo9g104880 T205004_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HDG7
M06931_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
HDG7_col_a 		0.637 0.877
HDG7
M10629_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$HDG7_01 		0.637 0.877
ANL2
M02046_2.00 		Arabidopsis thaliana
NCATTWATKNN
NNMATWAATGN		 PBM
Weirauch et al.(2014)
pTH8244 		0.612 0.719
ANL2
M06919_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
ANL2_col_a 		0.612 0.719
ANL2
M06920_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
ANL2_colamp_a 		0.612 0.719
HDG1
M06917_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
HDG1_col100_a 		0.607 0.649
HDG1
M06918_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
HDG1_colamp_a 		0.607 0.649
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo9g104880.1 Homeodomain 41 97

Links

Other Homeodomain family TFs
Other Brassica oleracea TFs

151 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_14988 Aegilops tauschii F775_14988 I 0.614
AMTR_s00040p00231210 Amborella trichopoda AMTR_s00040p00231210 I 0.612
AMTR_s00069p00091460 Amborella trichopoda AMTR_s00069p00091460 I 0.612
Aquca_013_00387 Aquilegia coerulea Aquca_013_00387 I 0.612
HDG1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5002090 I 0.607
HDG1 Arabidopsis thaliana AT3G61150 D 0.607
ANL2 Arabidopsis thaliana AT4G00730 D 0.612
HDG7 Arabidopsis thaliana AT5G52170 D 0.637
Bostr.10064s0036 Boechera stricta Bostr.10064s0036 I 0.612
Bostr.13158s0105 Boechera stricta Bostr.13158s0105 I 0.607
Bostr.25993s0196 Boechera stricta Bostr.25993s0196 I 0.612
BRADI3G51540 Brachypodium distachyon BRADI3G51540 I 0.614
BRADI4G35760 Brachypodium distachyon BRADI4G35760 I 0.612
Bo3g054630 Brassica oleracea Bo3g054630 I 0.612
Bo4g024940 Brassica oleracea Bo4g024940 I 0.612
Bo6g077480 Brassica oleracea Bo6g077480 I 0.607
Bo9g002480 Brassica oleracea Bo9g002480 I 0.612
Bra003439 Brassica rapa Bra003439 I 0.607
Bra004934 Brassica rapa Bra004934 I 0.612
Bra021363 Brassica rapa Bra021363 N 0.674
Bra028295 Brassica rapa Bra028295 I 0.846
Bra037355 Brassica rapa Bra037355 I 0.612
PK00670.1 Cannabis sativa PK00670.1 I 0.622
PK08504.1 Cannabis sativa PK08504.1 I 0.612
Cagra.0050s0122 Capsella grandiflora Cagra.0050s0122 I 0.612
Cagra.0094s0026 Capsella grandiflora Cagra.0094s0026 I 0.642
Cagra.3373s0039 Capsella grandiflora Cagra.3373s0039 I 0.607
Cagra.6594s0010 Capsella grandiflora Cagra.6594s0010 I 0.612
Carubv10000257m.g Capsella rubella Carubv10000257m.g I 0.612
Carubv10016704m.g Capsella rubella Carubv10016704m.g I 0.607
Carubv10022677m.g Capsella rubella Carubv10022677m.g I 0.612
Carubv10028346m.g Capsella rubella Carubv10028346m.g I 0.642
evm.TU.supercontig_107.25 Carica papaya evm.TU.supercontig_107.25 I 0.620
evm.TU.supercontig_18.215 Carica papaya evm.TU.supercontig_18.215 I 0.612
Ca_04491 Cicer arietinum Ca_04491 I 0.612
Ca_06267 Cicer arietinum Ca_06267 I 0.612
Ca_11891 Cicer arietinum Ca_11891 I 0.694
Ca_16386 Cicer arietinum Ca_16386 I 0.612
Ca_19784 Cicer arietinum Ca_19784 I 0.620
Cla006300 Citrullus lanatus Cla006300 I 0.610
Cla007037 Citrullus lanatus Cla007037 I 0.612
Cla021581 Citrullus lanatus Cla021581 I 0.614
Ciclev10018855m.g Citrus clementina Ciclev10018855m.g I 0.612
Ciclev10024950m.g Citrus clementina Ciclev10024950m.g I 0.603
orange1.1g002869m.g Citrus sinensis orange1.1g002869m.g I 0.612
orange1.1g003954m.g Citrus sinensis orange1.1g003954m.g I 0.620
orange1.1g004271m.g Citrus sinensis orange1.1g004271m.g I 0.603
Cucsa.250870 Cucumis sativus Cucsa.250870 I 0.610
Cucsa.363170 Cucumis sativus Cucsa.363170 I 0.612
Eucgr.D02248 Eucalyptus grandis Eucgr.D02248 I 0.612
Eucgr.K00234 Eucalyptus grandis Eucgr.K00234 I 0.620
Thhalv10001317m.g Eutrema salsugineum Thhalv10001317m.g I 0.610
Thhalv10005786m.g Eutrema salsugineum Thhalv10005786m.g I 0.607
Thhalv10015677m.g Eutrema salsugineum Thhalv10015677m.g I 0.642
Thhalv10028440m.g Eutrema salsugineum Thhalv10028440m.g I 0.612
gene13306-v1.0-hybrid Fragaria vesca gene13306-v1.0-hybrid I 0.620
gene19130-v1.0-hybrid Fragaria vesca gene19130-v1.0-hybrid I 0.612
GLYMA01G45070 Glycine max GLYMA01G45070 I 0.729
GLYMA03G01860 Glycine max GLYMA03G01860 I 0.612
GLYMA07G08340 Glycine max GLYMA07G08340 I 0.612
GLYMA09G02990 Glycine max GLYMA09G02990 N 0.666
GLYMA09G26600 Glycine max GLYMA09G26600 I 0.620
GLYMA09G40130 Glycine max GLYMA09G40130 I 0.612
GLYMA10G38280 Glycine max GLYMA10G38280 I 0.612
GLYMA11G00570 Glycine max GLYMA11G00570 I 0.729
GLYMA16G32130 Glycine max GLYMA16G32130 I 0.620
GLYMA18G45970 Glycine max GLYMA18G45970 I 0.612
GLYMA20G29580 Glycine max GLYMA20G29580 I 0.612
Gorai.001G171000 Gossypium raimondii Gorai.001G171000 I 0.612
Gorai.004G120700 Gossypium raimondii Gorai.004G120700 I 0.641
Gorai.007G096000 Gossypium raimondii Gorai.007G096000 I 0.612
Gorai.008G117200 Gossypium raimondii Gorai.008G117200 I 0.612
MLOC_61420 Hordeum vulgare MLOC_61420 I 0.614
LPERR02G22520 Leersia perrieri LPERR02G22520 I 0.614
LPERR09G13080 Leersia perrieri LPERR09G13080 I 0.612
Lus10005759.g Linum usitatissimum Lus10005759.g I 0.614
Lus10027437.g Linum usitatissimum Lus10027437.g I 0.614
Lus10036567.g Linum usitatissimum Lus10036567.g I 0.612
Lus10041362.g Linum usitatissimum Lus10041362.g I 0.612
LjSGA_016003.1 Lotus japonicus LjSGA_016003.1 I 0.612
MDP0000285637 Malus domestica MDP0000285637 I 0.612
MDP0000491277 Malus domestica MDP0000491277 I 0.612
cassava21275.m1 Manihot esculenta cassava21275.m1 I 0.620
cassava23105.valid.m1 Manihot esculenta cassava23105.valid.m1 I 0.620
cassava25087.valid.m1 Manihot esculenta cassava25087.valid.m1 I 0.612
cassava36876.valid.m1 Manihot esculenta cassava36876.valid.m1 I 0.612
MTR_0198s0030 Medicago truncatula MTR_0198s0030 I 0.632
MTR_1g101280 Medicago truncatula MTR_1g101280 I 0.612
MTR_5g005600 Medicago truncatula MTR_5g005600 N 0.632
MTR_7g076080 Medicago truncatula MTR_7g076080 I 0.612
MTR_8g432540 Medicago truncatula MTR_8g432540 I 0.612
mgf010371m Mimulus guttatus mgf010371m I 0.614
mgf015456m Mimulus guttatus mgf015456m I 0.642
mgf025522m Mimulus guttatus mgf025522m I 0.614
GSMUA_Achr1G18760_001 Musa acuminata GSMUA_Achr1G18760_001 I 0.612
GSMUA_Achr5G10510_001 Musa acuminata GSMUA_Achr5G10510_001 I 0.614
GSMUA_Achr5G20050_001 Musa acuminata GSMUA_Achr5G20050_001 I 0.612
GSMUA_AchrUn_randomG10540_001 Musa acuminata GSMUA_AchrUn_randomG10540_001 I 0.612
OBART02G27630 Oryza barthii OBART02G27630 I 0.614
OBART09G17090 Oryza barthii OBART09G17090 I 0.612
OB02G35000 Oryza brachyantha OB02G35000 I 0.614
ORGLA02G0238300 Oryza glaberrima ORGLA02G0238300 I 0.614
OGLUM02G28170 Oryza glumaepatula OGLUM02G28170 I 0.614
OGLUM09G17630 Oryza glumaepatula OGLUM09G17630 I 0.612
BGIOSGA005852 Oryza indica BGIOSGA005852 I 0.614
BGIOSGA029405 Oryza indica BGIOSGA029405 I 0.612
OLONG_000360 Oryza longistaminata OLONG_000360 I 0.614
OMERI02G26880 Oryza meridionalis OMERI02G26880 I 0.614
OMERI09G12650 Oryza meridionalis OMERI09G12650 I 0.612
ONIVA02G30520 Oryza nivara ONIVA02G30520 I 0.614
ONIVA09G18120 Oryza nivara ONIVA09G18120 I 0.612
OPUNC02G25360 Oryza punctata OPUNC02G25360 I 0.614
OPUNC09G15430 Oryza punctata OPUNC09G15430 I 0.612
ORUFI02G29080 Oryza rufipogon ORUFI02G29080 I 0.614
ORUFI09G18410 Oryza rufipogon ORUFI09G18410 I 0.612
ROC5 Oryza sativa OS02G0674800 I 0.614
Pavir.Ba01266 Panicum virgatum Pavir.Ba01266 I 0.612
Pavir.Eb00587 Panicum virgatum Pavir.Eb00587 I 0.612
Pavir.J04827 Panicum virgatum Pavir.J04827 I 0.612
POPTR_0002s15610 Populus trichocarpa POPTR_0002s15610 I 0.612
POPTR_0012s13390 Populus trichocarpa POPTR_0012s13390 I 0.620
POPTR_0014s07130 Populus trichocarpa POPTR_0014s07130 I 0.612
POPTR_0015s13340 Populus trichocarpa POPTR_0015s13340 I 0.620
Pm017987 Prunus mume Pm017987 I 0.612
Pm019365 Prunus mume Pm019365 I 0.622
PRUPE_ppa001436mg Prunus persica PRUPE_ppa001436mg I 0.612
PRUPE_ppa001894mg Prunus persica PRUPE_ppa001894mg I 0.622
30147.m014288 Ricinus communis 30147.m014288 I 0.620
30174.m008969 Ricinus communis 30174.m008969 I 0.612
SapurV1A.0024s0300 Salix purpurea SapurV1A.0024s0300 I 0.612
SapurV1A.0068s0140 Salix purpurea SapurV1A.0068s0140 I 0.620
SapurV1A.0586s0110 Salix purpurea SapurV1A.0586s0110 I 0.612
SapurV1A.0665s0060 Salix purpurea SapurV1A.0665s0060 I 0.643
Si000344m.g Setaria italica Si000344m.g I 0.612
Si028908m.g Setaria italica Si028908m.g I 0.612
Solyc01g091630.2 Solanum lycopersicum Solyc01g091630.2 I 0.614
Solyc03g026070.2 Solanum lycopersicum Solyc03g026070.2 I 0.622
Solyc09g066030.1 Solanum lycopersicum Solyc09g066030.1 I 0.603
PGSC0003DMG400007733 Solanum tuberosum PGSC0003DMG400007733 I 0.612
PGSC0003DMG400014279 Solanum tuberosum PGSC0003DMG400014279 I 0.622
PGSC0003DMG400027770 Solanum tuberosum PGSC0003DMG400027770 I 0.614
Sb02g030470 Sorghum bicolor Sb02g030470 I 0.612
Sb03g008090 Sorghum bicolor Sb03g008090 I 0.612
TCM_005412 Theobroma cacao TCM_005412 I 0.612
TCM_015114 Theobroma cacao TCM_015114 I 0.620
Traes_5BL_BCAA67AC6 Triticum aestivum Traes_5BL_BCAA67AC6 I 0.612
TRIUR3_30780 Triticum urartu TRIUR3_30780 I 0.612
VIT_15s0048g02000 Vitis vinifera VIT_15s0048g02000 I 0.614
VIT_16s0100g00670 Vitis vinifera VIT_16s0100g00670 I 0.608
GRMZM2G026643 Zea mays GRMZM2G026643 I 0.612
GRMZM2G116658 Zea mays GRMZM2G116658 I 0.612