Bra005398 (Brassica rapa)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 Bra005398 T205047_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-9
M06898_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
PHV_col_a 		0.866 0.964
ATHB-9
M02682_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 SELEX
Mathelier et al.(2014)
MA0573.1 		0.866 0.964
ATHB-9
M10623_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 Transfac
Matys et al.(2006)
P$ATHB9_01 		0.866 0.964
ATHB-15
M00864_2.00 		Arabidopsis thaliana
AATAATTACT
AGTAATTATT		 PBM
Franco-Zorrilla et al.(2014)
ICU4 		0.861 0.929
ATHB-15
M06899_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
ATHB15_col_a 		0.861 0.929
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra005398.1-P Homeodomain 18 77

Links

Other Homeodomain family TFs
Other Brassica rapa TFs

335 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000015855 Ailuropoda melanoleuca ENSAMEG00000015855 I
Alligator_sinensis_CCG015374.1 Alligator sinensis Alligator_sinensis_CCG015374.1 I
ENSAPLG00000008077 Anas platyrhynchos ENSAPLG00000008077 I
HES1 Anolis carolinensis ENSACAG00000001611 I
ENSAMXG00000012278 Astyanax mexicanus ENSAMXG00000012278 I
ENSAMXG00000012796 Astyanax mexicanus ENSAMXG00000012796 I
ENSBTAP00000000742-D1 Bos grunniens ENSBTAP00000000742-D1 I
ENSBTAP00000028261-D1 Bos grunniens ENSBTAP00000028261-D1 I
HES1 Bos taurus ENSBTAG00000000569 I
HES4 Bos taurus ENSBTAG00000014705 I
estExt_fgenesh2_kg.C_140002 Branchiostoma floridae estExt_fgenesh2_kg.C_140002 I
estExt_fgenesh2_kg.C_9080002 Branchiostoma floridae estExt_fgenesh2_kg.C_9080002 I
estExt_fgenesh2_pg.C_2610041 Branchiostoma floridae estExt_fgenesh2_pg.C_2610041 I
estExt_fgenesh2_pg.C_2610044 Branchiostoma floridae estExt_fgenesh2_pg.C_2610044 I
estExt_fgenesh2_pg.C_3520029 Branchiostoma floridae estExt_fgenesh2_pg.C_3520029 I
estExt_fgenesh2_pg.C_3520032 Branchiostoma floridae estExt_fgenesh2_pg.C_3520032 I
estExt_fgenesh2_pg.C_3670032 Branchiostoma floridae estExt_fgenesh2_pg.C_3670032 I
estExt_GenewiseH_1.C_2610051 Branchiostoma floridae estExt_GenewiseH_1.C_2610051 I
estExt_GenewiseH_1.C_960240 Branchiostoma floridae estExt_GenewiseH_1.C_960240 I
Brh_R009522 Buceros rhinoceros Brh_R009522 N
HES1 Callithrix jacchus ENSCJAG00000014044 I
Aan_R013367 Calypte anna Aan_R013367 N
HES4 Canis familiaris ENSCAFG00000019350 I
ENSCPOG00000021042 Cavia porcellus ENSCPOG00000021042 I
ENSCSAG00000000668 Chlorocebus sabaeus ENSCSAG00000000668 I
ENSCSAG00000008869 Chlorocebus sabaeus ENSCSAG00000008869 I
HES1 Choloepus hoffmanni ENSCHOG00000005633 I
her6 Danio rerio ENSDARG00000006514 I
her9 Danio rerio ENSDARG00000056438 I
HES4 Dasypus novemcinctus ENSDNOG00000024495 I
HES1 Dasypus novemcinctus ENSDNOG00000039639 I
ENSDORG00000014783 Dipodomys ordii ENSDORG00000014783 I
HES1 Equus caballus ENSECAG00000026945 I
ENSFALG00000007228 Ficedula albicollis ENSFALG00000007228 I
ENSGMOG00000000092 Gadus morhua ENSGMOG00000000092 I
ENSGMOG00000015708 Gadus morhua ENSGMOG00000015708 I
ENSGMOG00000018048 Gadus morhua ENSGMOG00000018048 I
hairy1 Gallus gallus ENSGALG00000002055 I
her9 Gasterosteus aculeatus ENSGACG00000007334 I
her6 Gasterosteus aculeatus ENSGACG00000009264 I
ENSGACG00000015969 Gasterosteus aculeatus ENSGACG00000015969 I
HES1 Gorilla gorilla ENSGGOG00000008521 I
HES4 Gorilla gorilla ENSGGOG00000013399 I
HES1 Homo sapiens ENSG00000114315 D
HES4 Homo sapiens ENSG00000188290 I
ENSSTOG00000026531 Ictidomys tridecemlineatus ENSSTOG00000026531 I
ENSLACG00000009729 Latimeria chalumnae ENSLACG00000009729 I
ENSLACG00000017918 Latimeria chalumnae ENSLACG00000017918 I
ENSLOCG00000004988 Lepisosteus oculatus ENSLOCG00000004988 I
ENSLOCG00000007298 Lepisosteus oculatus ENSLOCG00000007298 I
HES1 Loxodonta africana ENSLAFG00000008932 I
ENSP00000232424 Macaca fascicularis ENSP00000232424 I
HES4 Macaca mulatta ENSMMUG00000001817 I
ENSMEUG00000013941 Macropus eugenii ENSMEUG00000013941 I
HES1 Meleagris gallopavo ENSMGAG00000007566 I
ENSMICG00000012430 Microcebus murinus ENSMICG00000012430 I
HES4 Microcebus murinus ENSMICG00000015660 I
HES4 Monodelphis domestica ENSMODG00000018647 I
ENSMODG00000019833 Monodelphis domestica ENSMODG00000019833 I
ENSMPUG00000003643 Mustela putorius furo ENSMPUG00000003643 I
ENSMPUG00000006870 Mustela putorius furo ENSMPUG00000006870 I
ENSMPUG00000013915 Mustela putorius furo ENSMPUG00000013915 I
Hes1 Mus musculus ENSMUSG00000022528 D
Myotis_brandtii_Hes1_10032756 Myotis brandtii Myotis_brandtii_Hes1_10032756 I
HES1 Myotis lucifugus ENSMLUG00000008549 I
ENSNLEG00000006836 Nomascus leucogenys ENSNLEG00000006836 I
Ogr04559 Ophisaurus gracilis Ogr04559 I
Ogr11517 Ophisaurus gracilis Ogr11517 I
ENSONIG00000002398 Oreochromis niloticus ENSONIG00000002398 I
ENSONIG00000002619 Oreochromis niloticus ENSONIG00000002619 I
ENSONIG00000010641 Oreochromis niloticus ENSONIG00000010641 I
HES1 Ornithorhynchus anatinus ENSOANG00000015683 I
HES1 Oryctolagus cuniculus ENSOCUG00000009363 I
ENSORLG00000004584 Oryzias latipes ENSORLG00000004584 I
hes4 Oryzias latipes ENSORLG00000005453 I
hes1 Oryzias latipes ENSORLG00000007556 I
HES1 Otolemur garnettii ENSOGAG00000032425 I
ENSOARG00000007304 Ovis aries ENSOARG00000007304 I
ENSOARG00000020422 Ovis aries ENSOARG00000020422 I
HES1 Pan troglodytes ENSPTRG00000015753 I
ENSPTRG00000023647 Pan troglodytes ENSPTRG00000023647 I
ENSPTRG00000039445 Pan troglodytes ENSPTRG00000039445 I
ENSPANG00000018250 Papio anubis ENSPANG00000018250 I
ENSPANG00000024455 Papio anubis ENSPANG00000024455 I
ENSPSIG00000013040 Pelodiscus sinensis ENSPSIG00000013040 I
ENSPFOG00000016659 Poecilia formosa ENSPFOG00000016659 I
ENSPFOG00000019084 Poecilia formosa ENSPFOG00000019084 I
ENSPFOG00000022586 Poecilia formosa ENSPFOG00000022586 I
Pvit_06331 Pogona vitticeps Pvit_06331 I
Pvit_14102 Pogona vitticeps Pvit_14102 I
ENSPPYG00000014419 Pongo abelii ENSPPYG00000014419 I
HES2 Procavia capensis ENSPCAG00000007135 I
HES4 Pteropus vampyrus ENSPVAG00000010837 I
HES1 Pteropus vampyrus ENSPVAG00000015487 I
Hes1 Rattus norvegicus ENSRNOG00000001720 I
ENSSSCG00000024430 Sus scrofa ENSSSCG00000024430 I
ENSSSCG00000026362 Sus scrofa ENSSSCG00000026362 I
ENSTRUG00000001493 Takifugu rubripes ENSTRUG00000001493 I
her9 Takifugu rubripes ENSTRUG00000009985 I
her6 Takifugu rubripes ENSTRUG00000017395 I
ENSTNIG00000007837 Tetraodon nigroviridis ENSTNIG00000007837 I
her9 Tetraodon nigroviridis ENSTNIG00000015161 I
her6 Tetraodon nigroviridis ENSTNIG00000015567 I
HES1 Tursiops truncatus ENSTTRG00000001687 I
hes4.S Xenopus laevis XB-GENE-6256031 I
hes1.S Xenopus laevis XB-GENE-6256448 I
hes4.L Xenopus laevis XB-GENE-865740 I
hes1.L Xenopus laevis XB-GENE-865756 I
AAY96799 Xenopus tropicalis AAY96799 I
AAZ04408 Xenopus tropicalis AAZ04408 I
hes4 Xenopus tropicalis XB-GENE-487830 I
hes1 Xenopus tropicalis XB-GENE-487995 I
ENSXMAG00000003794 Xiphophorus maculatus ENSXMAG00000003794 I
ENSXMAG00000004442 Xiphophorus maculatus ENSXMAG00000004442 I