CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ENSPSIG00000004830
(
Pelodiscus sinensis
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
IPR001356
ENSPSIG00000004830
T214861_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Hoxd10
M00509_2.00
Mus musculus
NNNNNNNN
NNNNNNNN
PBM
Berger et al.(2008)
Hoxd10_2368
0.860
0.982
HOXD10
M05112_2.00
Homo sapiens
NKTTTATKRC
GYMATAAAMN
SELEX
Yin et al.(2017)
HOXD10_eDBD_HT-SELEX_1
0.860
0.982
HOXD10
M05113_2.00
Homo sapiens
RTCGTAAAHN
NDTTTACGAY
SELEX
Yin et al.(2017)
HOXD10_eDBD_HT-SELEX_2
0.860
0.982
HOXD10
M05116_2.00
Homo sapiens
RGTCGTAAAAH
DTTTTACGACY
SELEX
Yin et al.(2017)
HOXD10_FL_HT-SELEX_1
0.860
0.982
HOXD10
M05117_2.00
Homo sapiens
RRYMATAAAAH
DTTTTATKRYY
SELEX
Yin et al.(2017)
HOXD10_FL_HT-SELEX_2
0.860
0.982
HOXD10
M10687_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HOXD10_Q2
0.860
0.982
HOXD10
M10688_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HOXD10_Q6
0.860
0.982
HOXD10
M05114_2.00
Homo sapiens
NTTTTATKRC
GYMATAAAAN
SELEX
Yin et al.(2017)
HOXD10_eDBD_Methyl-HT-SELEX_1
0.860
0.982
HOXD10
M05115_2.00
Homo sapiens
GTCGTAAAHN
NDTTTACGAC
SELEX
Yin et al.(2017)
HOXD10_eDBD_Methyl-HT-SELEX_2
0.860
0.982
HOXD10
M05118_2.00
Homo sapiens
VGTCGTAAAAH
DTTTTACGACB
SELEX
Yin et al.(2017)
HOXD10_FL_Methyl-HT-SELEX_1
0.860
0.982
HOXD10
M05119_2.00
Homo sapiens
DGYAATAAAAH
DTTTTATTRCH
SELEX
Yin et al.(2017)
HOXD10_FL_Methyl-HT-SELEX_2
0.860
0.982
Hoxa10
M00382_2.00
Mus musculus
NHWAYNNNN
NNNNRTWDN
PBM
Berger et al.(2008)
Hoxa10_2318
0.859
0.947
HOXA10
M05394_2.00
Homo sapiens
RRTCGTAAAAH
DTTTTACGAYY
SELEX
Yin et al.(2017)
HOXA10_eDBD_HT-SELEX_1
0.859
0.947
HOXA10
M05395_2.00
Homo sapiens
NTTTTATKRCY
RGYMATAAAAN
SELEX
Yin et al.(2017)
HOXA10_eDBD_HT-SELEX_2
0.859
0.947
HOXA10
M05398_2.00
Homo sapiens
NRTCRTWAANN
NNTTWAYGAYN
SELEX
Yin et al.(2017)
HOXA10_FL_HT-SELEX_1
0.859
0.947
HOXA10
M05399_2.00
Homo sapiens
NNTTWATKRCN
NGYMATWAANN
SELEX
Yin et al.(2017)
HOXA10_FL_HT-SELEX_2
0.859
0.947
Hoxa10
M09170_2.00
Mus musculus
DCATAAAYYRBH
DVYRRTTTATGH
Misc
Kulakovskiy et al.(2013)
HXA10_MOUSE.H11MO.0.C
0.859
0.947
Hoxa10
M10763_2.00
Mus musculus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HOXA10_Q5
0.859
0.947
HOXA10
M05396_2.00
Homo sapiens
NGTCGTAAAWN
NWTTTACGACN
SELEX
Yin et al.(2017)
HOXA10_eDBD_Methyl-HT-SELEX_1
0.859
0.947
HOXA10
M05397_2.00
Homo sapiens
NTTTTATKRCB
VGYMATAAAAN
SELEX
Yin et al.(2017)
HOXA10_eDBD_Methyl-HT-SELEX_2
0.859
0.947
HOXA10
M05400_2.00
Homo sapiens
NRTCGTWAANN
NNTTWACGAYN
SELEX
Yin et al.(2017)
HOXA10_FL_Methyl-HT-SELEX_1
0.859
0.947
HOXA10
M05401_2.00
Homo sapiens
NNTTWATKRYN
NRYMATWAANN
SELEX
Yin et al.(2017)
HOXA10_FL_Methyl-HT-SELEX_2
0.859
0.947
Hoxc10
M00421_2.00
Mus musculus
TTWATKAB
VTMATWAA
PBM
Berger et al.(2008)
Hoxc10_2779
0.855
0.982
HOXC10
M03228_2.00
Homo sapiens
DTTTWATKDB
VHMATWAAAH
SELEX
Jolma et al.(2013)
HOXC10_1
0.855
0.982
HOXC10
M03229_2.00
Homo sapiens
NNTTWATKRB
VYMATWAANN
SELEX
Jolma et al.(2013)
HOXC10_2
0.855
0.982
HOXC10
M03230_2.00
Homo sapiens
NWTTWAYGAB
VTCRTWAAWN
SELEX
Jolma et al.(2013)
HOXC10_3
0.855
0.982
Hoxc10
M03252_2.00
Mus musculus
DTTTWAYGAY
RTCRTWAAAH
SELEX
Jolma et al.(2013)
Hoxc10_1
0.855
0.982
Hoxc10
M03253_2.00
Mus musculus
DTTTWATKRY
RYMATWAAAH
SELEX
Jolma et al.(2013)
Hoxc10_2
0.855
0.982
HOXC10
M05335_2.00
Homo sapiens
NDTTTATKRCN
NGYMATAAAHN
SELEX
Yin et al.(2017)
HOXC10_eDBD_HT-SELEX_1
0.855
0.982
HOXC10
M05336_2.00
Homo sapiens
NRTCGTAAAHN
NDTTTACGAYN
SELEX
Yin et al.(2017)
HOXC10_eDBD_HT-SELEX_2
0.855
0.982
HOXC10
M05339_2.00
Homo sapiens
NTTTTATKRCN
NGYMATAAAAN
SELEX
Yin et al.(2017)
HOXC10_FL_HT-SELEX_1
0.855
0.982
HOXC10
M05340_2.00
Homo sapiens
NRTCGTAAAWN
NWTTTACGAYN
SELEX
Yin et al.(2017)
HOXC10_FL_HT-SELEX_2
0.855
0.982
HOXC10
M05337_2.00
Homo sapiens
NTTTTATKRCN
NGYMATAAAAN
SELEX
Yin et al.(2017)
HOXC10_eDBD_Methyl-HT-SELEX_1
0.855
0.982
HOXC10
M05338_2.00
Homo sapiens
NRTCGTAAAHN
NDTTTACGAYN
SELEX
Yin et al.(2017)
HOXC10_eDBD_Methyl-HT-SELEX_2
0.855
0.982
HOXC10
M05341_2.00
Homo sapiens
DTTTTATKRCH
DGYMATAAAAH
SELEX
Yin et al.(2017)
HOXC10_FL_Methyl-HT-SELEX_1
0.855
0.982
HOXC10
M05342_2.00
Homo sapiens
VGTCGTAAAHN
NDTTTACGACB
SELEX
Yin et al.(2017)
HOXC10_FL_Methyl-HT-SELEX_2
0.855
0.982
Hoxa9
M00475_2.00
Mus musculus
NNDDBNNN
NNNVHHNN
PBM
Berger et al.(2008)
Hoxa9_2622
0.806
0.842
HOXA9
M03085_2.00
Homo sapiens
NNDTTWAYGAYN
NRTCRTWAAHNN
SELEX
Jolma et al.(2013)
HOXA10_1
0.806
0.842
HOXA9
M03086_2.00
Homo sapiens
NDTTWATKRYN
NRYMATWAAHN
SELEX
Jolma et al.(2013)
HOXA10_2
0.806
0.842
HOXA9
M04932_2.00
Homo sapiens
NNDWWABKRC
GYMVTWWHNN
SELEX
Yin et al.(2017)
HOXA9_FL_HT-SELEX_1
0.806
0.842
HOXA9
M04933_2.00
Homo sapiens
NNDTWAYGRB
VYCRTWAHNN
SELEX
Yin et al.(2017)
HOXA9_FL_HT-SELEX_2
0.806
0.842
Hoxa9
M08138_2.00
Mus musculus
TGATTKATKRB
VYMATMAATCA
ChIP-seq
Mathelier et al.(2014)
MA0594.1
0.806
0.842
HOXA9
M09130_2.00
Homo sapiens
DCATAAAYYRBH
DVYRRTTTATGH
Misc
Kulakovskiy et al.(2013)
HXA10_HUMAN.H11MO.0.C
0.806
0.842
HOXA9
M09131_2.00
Homo sapiens
HHATAAATCAH
DTGATTTATDD
Misc
Kulakovskiy et al.(2013)
HXA9_HUMAN.H11MO.0.B
0.806
0.842
Hoxa9
M09203_2.00
Mus musculus
HHATAAATCAH
DTGATTTATDD
Misc
Kulakovskiy et al.(2013)
HXA9_MOUSE.H11MO.0.B
0.806
0.842
Hoxa9
M09575_2.00
Mus musculus
WGATTKATDRBY
RVYHATMAATCW
Misc
Heinz et al.(2010)
HSC-Hoxa9_GSE33509
0.806
0.842
HOXA9
M10642_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HOXA10_Q6
0.806
0.842
HOXA9
M10643_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HOXA9_04
0.806
0.842
HOXA9
M10644_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HOXA9_Q5_01
0.806
0.842
HOXA9
M10645_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HOXA9_Q5
0.806
0.842
HOXA9
M04934_2.00
Homo sapiens
NNDTWAYKRC
GYMRTWAHNN
SELEX
Yin et al.(2017)
HOXA9_FL_Methyl-HT-SELEX_1
0.806
0.842
HOXA9
M04935_2.00
Homo sapiens
NNDTWACGAY
RTCGTWAHNN
SELEX
Yin et al.(2017)
HOXA9_FL_Methyl-HT-SELEX_2
0.806
0.842
Hoxd9
M03282_2.00
Mus musculus
TTTWATKKB
VMMATWAAA
SELEX
Jolma et al.(2013)
Hoxd9_1
0.806
0.825
Hoxd9
M03283_2.00
Mus musculus
DWTTWATKRY
RYMATWAAWH
SELEX
Jolma et al.(2013)
Hoxd9_2
0.806
0.825
Hoxd9
M03284_2.00
Mus musculus
DTTWAYGRB
VYCRTWAAH
SELEX
Jolma et al.(2013)
Hoxd9_3
0.806
0.825
HOXC9
M05331_2.00
Homo sapiens
GTCGTAAAAN
NTTTTACGAC
SELEX
Yin et al.(2017)
HOXC9_FL_HT-SELEX_1
0.806
0.825
HOXC9
M05332_2.00
Homo sapiens
NTTTTATKRC
GYMATAAAAN
SELEX
Yin et al.(2017)
HOXC9_FL_HT-SELEX_2
0.806
0.825
HOXD9
M05104_2.00
Homo sapiens
NTTTTATKRC
GYMATAAAAN
SELEX
Yin et al.(2017)
HOXD9_eDBD_HT-SELEX_1
0.806
0.825
HOXD9
M05105_2.00
Homo sapiens
RTCRTAAAWN
NWTTTAYGAY
SELEX
Yin et al.(2017)
HOXD9_eDBD_HT-SELEX_2
0.806
0.825
HOXD9
M05108_2.00
Homo sapiens
RTCGTAAAWN
NWTTTACGAY
SELEX
Yin et al.(2017)
HOXD9_FL_HT-SELEX_1
0.806
0.825
HOXD9
M05109_2.00
Homo sapiens
NTTTTATKRC
GYMATAAAAN
SELEX
Yin et al.(2017)
HOXD9_FL_HT-SELEX_2
0.806
0.825
HOXC9
M09161_2.00
Homo sapiens
HTTWATKGCH
DGCMATWAAD
Misc
Kulakovskiy et al.(2013)
HXC9_HUMAN.H11MO.0.C
0.806
0.825
HOXD9
M10686_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HOXD9_Q2
0.806
0.825
HOXC9
M05333_2.00
Homo sapiens
RTCGTAAAHN
NDTTTACGAY
SELEX
Yin et al.(2017)
HOXC9_FL_Methyl-HT-SELEX_1
0.806
0.825
HOXC9
M05334_2.00
Homo sapiens
NTTTWATKRC
GYMATWAAAN
SELEX
Yin et al.(2017)
HOXC9_FL_Methyl-HT-SELEX_2
0.806
0.825
HOXD9
M05106_2.00
Homo sapiens
NNTTWATKRC
GYMATWAANN
SELEX
Yin et al.(2017)
HOXD9_eDBD_Methyl-HT-SELEX_1
0.806
0.825
HOXD9
M05107_2.00
Homo sapiens
RTCGTAAANN
NNTTTACGAY
SELEX
Yin et al.(2017)
HOXD9_eDBD_Methyl-HT-SELEX_2
0.806
0.825
HOXD9
M05110_2.00
Homo sapiens
RTCGTAAANN
NNTTTACGAY
SELEX
Yin et al.(2017)
HOXD9_FL_Methyl-HT-SELEX_1
0.806
0.825
HOXD9
M05111_2.00
Homo sapiens
NDTTWATKRC
GYMATWAAHN
SELEX
Yin et al.(2017)
HOXD9_FL_Methyl-HT-SELEX_2
0.806
0.825
Hoxb9
M00410_2.00
Mus musculus
NTTWAYDDNN
NNHHRTWAAN
PBM
Berger et al.(2008)
Hoxb9_3413
0.806
0.807
HOXB9
M05289_2.00
Homo sapiens
RTCRTAAAWN
NWTTTAYGAY
SELEX
Yin et al.(2017)
HOXB9_eDBD_HT-SELEX_1
0.806
0.807
HOXB9
M05290_2.00
Homo sapiens
NTTTWATKRC
GYMATWAAAN
SELEX
Yin et al.(2017)
HOXB9_eDBD_HT-SELEX_2
0.806
0.807
HOXB9
M05291_2.00
Homo sapiens
GTCGTAAAHB
VDTTTACGAC
SELEX
Yin et al.(2017)
HOXB9_eDBD_Methyl-HT-SELEX
0.806
0.807
Hoxc9
M00470_2.00
Mus musculus
NGTAATWAAN
NTTWATTACN
PBM
Berger et al.(2008)
Hoxc9_2367
0.798
0.807
Hoxc9
M08137_2.00
Mus musculus
NWGATTTATDGSH
DSCHATAAATCWN
ChIP-seq
Mathelier et al.(2014)
MA0485.1
0.798
0.807
Hoxc9
M09574_2.00
Mus musculus
TGATTTATDGCH
DGCHATAAATCA
Misc
Heinz et al.(2010)
Ainv15-Hoxc9_GSE21812
0.798
0.807
Hoxd11
M00493_2.00
Mus musculus
DDDNNNNN
NNNNNHHH
PBM
Berger et al.(2008)
Hoxd11_3873
0.766
0.719
HOXD11
M03139_2.00
Homo sapiens
RTCGTAAAWH
DWTTTACGAY
SELEX
Jolma et al.(2013)
HOXD11_1
0.766
0.719
HOXD11
M03140_2.00
Homo sapiens
TTTWATKRBH
DVYMATWAAA
SELEX
Jolma et al.(2013)
HOXD11_2
0.766
0.719
HOXD11
M05120_2.00
Homo sapiens
NRTCGTWAANNDTWAH
DTWAHNNTTWACGAYN
SELEX
Yin et al.(2017)
HOXD11_eDBD_HT-SELEX
0.766
0.719
HOXD11
M05121_2.00
Homo sapiens
NRTCGTWAAHNDTWAH
DTWAHNDTTWACGAYN
SELEX
Yin et al.(2017)
HOXD11_eDBD_Methyl-HT-SELEX
0.766
0.719
Hoxc11
M00390_2.00
Mus musculus
NTTWAYDDBN
NVHHRTWAAN
PBM
Berger et al.(2008)
Hoxc11_3718
0.766
0.702
Hoxa11
M00474_2.00
Mus musculus
NNHNHNNNN
NNNNDNDNN
PBM
Berger et al.(2008)
Hoxa11_2218
0.766
0.702
HOXC11
M03131_2.00
Homo sapiens
NWTTWAYGAYH
DRTCRTWAAWN
SELEX
Jolma et al.(2013)
HOXC11_1
0.766
0.702
HOXC11
M03132_2.00
Homo sapiens
NWTTWATKRBH
DVYMATWAAWN
SELEX
Jolma et al.(2013)
HOXC11_2
0.766
0.702
HOXC11
M03133_2.00
Homo sapiens
DRTCGTWAAWN
NWTTWACGAYH
SELEX
Jolma et al.(2013)
HOXC11_3
0.766
0.702
HOXC11
M03134_2.00
Homo sapiens
NTTTTATKRBN
NVYMATAAAAN
SELEX
Jolma et al.(2013)
HOXC11_4
0.766
0.702
Hoxa11
M03274_2.00
Mus musculus
NNDTTWAYGABN
NVTCRTWAAHNN
SELEX
Jolma et al.(2013)
Hoxa11_1
0.766
0.702
Hoxa11
M03275_2.00
Mus musculus
NDTTWATKRNN
NNYMATWAAHN
SELEX
Jolma et al.(2013)
Hoxa11_2
0.766
0.702
HOXA11
M04897_2.00
Homo sapiens
VGTCGTAAAWH
DWTTTACGACB
SELEX
Yin et al.(2017)
HOXA11_eDBD_HT-SELEX_1
0.766
0.702
HOXA11
M04898_2.00
Homo sapiens
DDTTWATKRSN
NSYMATWAAHH
SELEX
Yin et al.(2017)
HOXA11_eDBD_HT-SELEX_2
0.766
0.702
HOXC11
M05075_2.00
Homo sapiens
NDTTWACGAYN
NRTCGTWAAHN
SELEX
Yin et al.(2017)
HOXC11_eDBD_HT-SELEX_1
0.766
0.702
HOXC11
M05076_2.00
Homo sapiens
NWTTWATKRCH
DGYMATWAAWN
SELEX
Yin et al.(2017)
HOXC11_eDBD_HT-SELEX_2
0.766
0.702
HOXC11
M05079_2.00
Homo sapiens
NRTCGTWAAHN
NDTTWACGAYN
SELEX
Yin et al.(2017)
HOXC11_FL_HT-SELEX_1
0.766
0.702
HOXC11
M05080_2.00
Homo sapiens
NDTTWATKRSN
NSYMATWAAHN
SELEX
Yin et al.(2017)
HOXC11_FL_HT-SELEX_2
0.766
0.702
HOXA11
M04899_2.00
Homo sapiens
NRTCGTAAAWH
DWTTTACGAYN
SELEX
Yin et al.(2017)
HOXA11_eDBD_Methyl-HT-SELEX_1
0.766
0.702
HOXA11
M04900_2.00
Homo sapiens
DYTTTATKRCH
DGYMATAAARH
SELEX
Yin et al.(2017)
HOXA11_eDBD_Methyl-HT-SELEX_2
0.766
0.702
HOXC11
M05077_2.00
Homo sapiens
NRTCGTAAAHN
NDTTTACGAYN
SELEX
Yin et al.(2017)
HOXC11_eDBD_Methyl-HT-SELEX_1
0.766
0.702
HOXC11
M05078_2.00
Homo sapiens
NDTTTATKRSN
NSYMATAAAHN
SELEX
Yin et al.(2017)
HOXC11_eDBD_Methyl-HT-SELEX_2
0.766
0.702
HOXC11
M05081_2.00
Homo sapiens
NRTCGTWAANN
NNTTWACGAYN
SELEX
Yin et al.(2017)
HOXC11_FL_Methyl-HT-SELEX_1
0.766
0.702
HOXC11
M05082_2.00
Homo sapiens
NNTTWAYKRSN
NSYMRTWAANN
SELEX
Yin et al.(2017)
HOXC11_FL_Methyl-HT-SELEX_2
0.766
0.702
Abd-B
M00554_2.00
Drosophila melanogaster
NWTWAYDDNN
NNHHRTWAWN
PBM
Busser et al.(2012a)
Abd-B
0.651
0.684
Abd-B
M03772_2.00
Drosophila melanogaster
DRTCRTAAAWH
DWTTTAYGAYH
SELEX
Nitta et al.(2015)
Abd-B_1
0.651
0.684
Abd-B
M03773_2.00
Drosophila melanogaster
DTTTTATKRCY
RGYMATAAAAH
SELEX
Nitta et al.(2015)
Abd-B_2
0.651
0.684
Abd-B
M03774_2.00
Drosophila melanogaster
NKCARYAACGACYW
WRGTCGTTRYTGMN
SELEX
Nitta et al.(2015)
Abd-B_3
0.651
0.684
Abd-B
M03775_2.00
Drosophila melanogaster
DTTTWATGKSTTTY
RAAASMCATWAAAH
SELEX
Nitta et al.(2015)
Abd-B_4
0.651
0.684
Abd-B
M06476_2.00
Drosophila melanogaster
TTTATKR
YMATAAA
B1H
Mathelier et al.(2014)
MA0165.1
0.651
0.684
Abd-B
M06211_2.00
Drosophila melanogaster
YCATAAAA
TTTTATGR
B1H
Zhu et al.(2011)
Abd-B_FlyReg_FBgn0000015
0.651
0.684
Abd-B
M09672_2.00
Drosophila melanogaster
YMATAAAAHH
DDTTTTATKR
Misc
Kulakovskiy et al.(2009)
Abd-B
0.651
0.684
Abd-B
M10779_2.00
Drosophila melanogaster
VSNTTDATKRCNNN
NNNGYMATHAANSB
Transfac
Matys et al.(2006)
I$ABDB_01
0.651
0.684
Abd-B
M10780_2.00
Drosophila melanogaster
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
I$ABDB_Q6
0.651
0.684
abd-A
M03770_2.00
Drosophila melanogaster
NNTAATKRCN
NGYMATTANN
SELEX
Nitta et al.(2015)
abd-A_1
0.623
0.702
abd-A
M03771_2.00
Drosophila melanogaster
NNTAATKRCN
NGYMATTANN
SELEX
Nitta et al.(2015)
abd-A_2
0.623
0.702
abd-A
M06475_2.00
Drosophila melanogaster
TTAATKA
TMATTAA
B1H
Mathelier et al.(2014)
MA0206.1
0.623
0.702
abd-A
M06210_2.00
Drosophila melanogaster
WTWATKDM
KHMATWAW
B1H
Zhu et al.(2011)
Abd-A_FlyReg_FBgn0000014
0.623
0.702
abd-A
M09671_2.00
Drosophila melanogaster
HTAATKRH
DYMATTAD
Misc
Kulakovskiy et al.(2009)
abd-A
0.623
0.702
abd-A
M10778_2.00
Drosophila melanogaster
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
I$ABDA_Q6
0.623
0.702
Ubx
M00558_2.00
Drosophila melanogaster
NWWAYDDNN
NNHHRTWWN
PBM
Busser et al.(2012a)
Ubx
0.614
0.667
Ubx
M03804_2.00
Drosophila melanogaster
NTAATKRH
DYMATTAN
SELEX
Nitta et al.(2015)
Ubx_1
0.614
0.667
Ubx
M06499_2.00
Drosophila melanogaster
NTTAATKR
YMATTAAN
B1H
Mathelier et al.(2014)
MA0094.2
0.614
0.667
Ubx
M06273_2.00
Drosophila melanogaster
NTTAATKR
YMATTAAN
B1H
Zhu et al.(2011)
Ubx_Cell_FBgn0003944
0.614
0.667
Ubx
M06274_2.00
Drosophila melanogaster
TAATKD
HMATTA
B1H
Zhu et al.(2011)
Ubx_FlyReg_FBgn0003944
0.614
0.667
Ubx
M06275_2.00
Drosophila melanogaster
NTTWATKR
YMATWAAN
B1H
Zhu et al.(2011)
Ubx_SOLEXA_FBgn0003944
0.614
0.667
Ubx
M09680_2.00
Drosophila melanogaster
TTAATKR
YMATTAA
Misc
Kulakovskiy et al.(2009)
Ubx
0.614
0.667
Ubx
M10788_2.00
Drosophila melanogaster
NNVNNNNTAATKRNBHNND
HNNDVNYMATTANNNNBNN
Transfac
Matys et al.(2006)
I$UBX_01
0.614
0.667
CBG00023
M02062_2.00
Caenorhabditis briggsae
NWWATKDNNN
NNNHMATWWN
PBM
Weirauch et al.(2014)
pTH5778
0.608
0.491
egl-5
M09581_2.00
Caenorhabditis elegans
DWTTWATGGS
SCCATWAAWH
Misc
Heinz et al.(2010)
cElegans-L3-EGL5_modEncode
0.608
0.491
Hoxa6
M00494_2.00
Mus musculus
NWWATKRNN
NNYMATWWN
PBM
Berger et al.(2008)
Hoxa6_1040
0.607
0.684
HOXA6
M04974_2.00
Homo sapiens
NNTAATKRVN
NBYMATTANN
SELEX
Yin et al.(2017)
HOXA6_eDBD_HT-SELEX
0.607
0.684
HOXA6
M04975_2.00
Homo sapiens
NNTAATKRBN
NVYMATTANN
SELEX
Yin et al.(2017)
HOXA6_eDBD_Methyl-HT-SELEX_1
0.607
0.684
HOXA6
M04976_2.00
Homo sapiens
NTAAYGRY
RYCRTTAN
SELEX
Yin et al.(2017)
HOXA6_eDBD_Methyl-HT-SELEX_2
0.607
0.684
Hoxc6
M00392_2.00
Mus musculus
TTAATTAB
VTAATTAA
PBM
Berger et al.(2008)
Hoxc6_3954
0.607
0.667
Hoxc12
M00508_2.00
Mus musculus
NDTWAYNDBN
NVHNRTWAHN
PBM
Berger et al.(2008)
Hoxc12_3480
0.605
0.649
HOXC12
M03135_2.00
Homo sapiens
TTTTATTRY
RYAATAAAA
SELEX
Jolma et al.(2013)
HOXC12_1
0.605
0.649
HOXC12
M03136_2.00
Homo sapiens
RRTCGTAAAAH
DTTTTACGAYY
SELEX
Jolma et al.(2013)
HOXC12_2
0.605
0.649
HOXC12
M05083_2.00
Homo sapiens
NGYAATAAAAN
NTTTTATTRCN
SELEX
Yin et al.(2017)
HOXC12_eDBD_HT-SELEX_1
0.605
0.649
HOXC12
M05084_2.00
Homo sapiens
VRTCGTAAAHN
NDTTTACGAYB
SELEX
Yin et al.(2017)
HOXC12_eDBD_HT-SELEX_2
0.605
0.649
HOXC12
M05085_2.00
Homo sapiens
NGYAATAAAAH
DTTTTATTRCN
SELEX
Yin et al.(2017)
HOXC12_eDBD_Methyl-HT-SELEX_1
0.605
0.649
HOXC12
M05086_2.00
Homo sapiens
NRTCGTAAAHH
DDTTTACGAYN
SELEX
Yin et al.(2017)
HOXC12_eDBD_Methyl-HT-SELEX_2
0.605
0.649
Hoxd12_CONSTRUCT
M00538_2.00
PBM CONSTRUCTS
NWTWAYNDBN
NVHNRTWAWN
PBM
Berger et al.(2008)
Hoxd12_3481
0.605
0.632
HOXD12
M03206_2.00
Homo sapiens
SYAATAAAA
TTTTATTRS
SELEX
Jolma et al.(2013)
HOXD12_1
0.605
0.632
HOXD12
M03207_2.00
Homo sapiens
RVTCGTAAAAH
DTTTTACGABY
SELEX
Jolma et al.(2013)
HOXD12_2
0.605
0.632
HOXD12
M03208_2.00
Homo sapiens
NRTCGTAAAHN
NDTTTACGAYN
SELEX
Jolma et al.(2013)
HOXD12_3
0.605
0.632
HOXD12
M03209_2.00
Homo sapiens
DTTWATYRC
GYRATWAAH
SELEX
Jolma et al.(2013)
HOXD12_4
0.605
0.632
HOXD12
M05279_2.00
Homo sapiens
NKTWACGAYN
NRTCGTWAMN
SELEX
Yin et al.(2017)
HOXD12_eDBD_HT-SELEX
0.605
0.632
HOXD12
M05280_2.00
Homo sapiens
NRTCGTAAAH
DTTTACGAYN
SELEX
Yin et al.(2017)
HOXD12_eDBD_Methyl-HT-SELEX
0.605
0.632
Q8I9J5_9BILA
M02214_2.00
Spadella cephaloptera
NVTAWTWABN
NVTWAWTABN
PBM
Weirauch et al.(2014)
pTH6164
0.605
0.579
Hoxc8
M00391_2.00
Mus musculus
NNDNYNNNN
NNNNRNHNN
PBM
Berger et al.(2008)
Hoxc8_3429
0.605
0.702
Hoxd8
M00436_2.00
Mus musculus
NNWWYNNN
NNNRWWNN
PBM
Berger et al.(2008)
Hoxd8_2644
0.605
0.702
Hoxb8
M00517_2.00
Mus musculus
NWWAYNDNN
NNHNRTWWN
PBM
Berger et al.(2008)
Hoxb8_3780
0.605
0.702
HOXD8
M03221_2.00
Homo sapiens
VHWAATKWDN
NHWMATTWDB
SELEX
Jolma et al.(2013)
HOXD8_1
0.605
0.702
HOXB8
M05048_2.00
Homo sapiens
NTAATKRM
KYMATTAN
SELEX
Yin et al.(2017)
HOXB8_eDBD_HT-SELEX
0.605
0.702
HOXC8
M04912_2.00
Homo sapiens
NYAATTRN
NYAATTRN
SELEX
Yin et al.(2017)
HOXC8_FL_HT-SELEX
0.605
0.702
HOXD8
M05310_2.00
Homo sapiens
BTAATKRY
RYMATTAV
SELEX
Yin et al.(2017)
HOXD8_eDBD_HT-SELEX
0.605
0.702
HOXB8
M09141_2.00
Homo sapiens
BMATHAATCAA
TTGATTDATKV
Misc
Kulakovskiy et al.(2013)
HXB8_HUMAN.H11MO.0.C
0.605
0.702
Hoxb8
M09214_2.00
Mus musculus
BMATHAATCAA
TTGATTDATKV
Misc
Kulakovskiy et al.(2013)
HXB8_MOUSE.H11MO.0.C
0.605
0.702
HOXC8
M10636_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HOXC8_Q3
0.605
0.702
HOXB8
M05049_2.00
Homo sapiens
NTAATKRN
NYMATTAN
SELEX
Yin et al.(2017)
HOXB8_eDBD_Methyl-HT-SELEX_1
0.605
0.702
HOXB8
M05050_2.00
Homo sapiens
NTAAYGAY
RTCRTTAN
SELEX
Yin et al.(2017)
HOXB8_eDBD_Methyl-HT-SELEX_2
0.605
0.702
HOXC8
M04913_2.00
Homo sapiens
NYMATKRN
NYMATKRN
SELEX
Yin et al.(2017)
HOXC8_FL_Methyl-HT-SELEX_1
0.605
0.702
HOXC8
M04914_2.00
Homo sapiens
NTWAYGRY
RYCRTWAN
SELEX
Yin et al.(2017)
HOXC8_FL_Methyl-HT-SELEX_2
0.605
0.702
HOXD8
M05311_2.00
Homo sapiens
NTAATKRN
NYMATTAN
SELEX
Yin et al.(2017)
HOXD8_eDBD_Methyl-HT-SELEX_1
0.605
0.702
HOXD8
M05312_2.00
Homo sapiens
NTWAYGRY
RYCRTWAN
SELEX
Yin et al.(2017)
HOXD8_eDBD_Methyl-HT-SELEX_2
0.605
0.702
Hoxb6
M00381_2.00
Mus musculus
NNDHNNN
NNNDHNN
PBM
Berger et al.(2008)
Hoxb6_3428
0.603
0.667
HOXB6
M04999_2.00
Homo sapiens
NTAATKRY
RYMATTAN
SELEX
Yin et al.(2017)
HOXB6_eDBD_HT-SELEX
0.603
0.667
HOXB6
M05000_2.00
Homo sapiens
HTAAYGAY
RTCRTTAD
SELEX
Yin et al.(2017)
HOXB6_eDBD_Methyl-HT-SELEX_1
0.603
0.667
HOXB6
M05001_2.00
Homo sapiens
NTWATKRB
VYMATWAN
SELEX
Yin et al.(2017)
HOXB6_eDBD_Methyl-HT-SELEX_2
0.603
0.667
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSPSIP00000005176
Homeodomain
273
329
RKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSINLTDRQVKIWFQNRRMKLKK
Links
Other
Homeodomain
family TFs
Other
Pelodiscus sinensis
TFs
1391 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ACYPI21591
Acyrthosiphon pisum
ACYPI21591
I
AAEL018187
Aedes aegypti
AAEL018187
I
ENSAMEG00000004934
Ailuropoda melanoleuca
ENSAMEG00000004934
I
ENSAMEG00000016548
Ailuropoda melanoleuca
ENSAMEG00000016548
I
Alligator_sinensis_CCG002668.1
Alligator sinensis
Alligator_sinensis_CCG002668.1
I
Alligator_sinensis_CCG016523.1
Alligator sinensis
Alligator_sinensis_CCG016523.1
I
ENSAPLG00000002586
Anas platyrhynchos
ENSAPLG00000002586
I
ENSAPLG00000014618
Anas platyrhynchos
ENSAPLG00000014618
I
ENSACAG00000011719
Anolis carolinensis
ENSACAG00000011719
I
ENSACAG00000012187
Anolis carolinensis
ENSACAG00000012187
I
AALB009566
Anopheles albimanus
AALB009566
I
AARA009846
Anopheles arabiensis
AARA009846
I
AATE005421
Anopheles atroparvus
AATE005421
I
ACUA002164
Anopheles culicifacies
ACUA002164
I
ADIR003350
Anopheles dirus
ADIR003350
I
AEPI007299
Anopheles epiroticus
AEPI007299
I
AFAF001586
Anopheles farauti
AFAF001586
I
AFUN011236
Anopheles funestus
AFUN011236
I
AGAP003940
Anopheles gambiae
AGAP003940
I
AMAM019487
Anopheles maculatus
AMAM019487
I
AMIN000296
Anopheles minimus
AMIN000296
I
AQUA009136
Anopheles quadriannulatus
AQUA009136
I
ASIS014250
Anopheles sinensis
ASIS014250
I
ASTEI00952
Anopheles stephensi
ASTEI00952
I
GB41890
Apis mellifera
GB41890
I
Afo_R000794
Aptenodytes forsteri
Afo_R000794
I
Afo_R013485
Aptenodytes forsteri
Afo_R013485
I
ENSAMXG00000006838
Astyanax mexicanus
ENSAMXG00000006838
I
ENSAMXG00000017753
Astyanax mexicanus
ENSAMXG00000017753
I
BGLB014390
Biomphalaria glabrata
BGLB014390
I
BGIBMGA000445
Bombyx mori
BGIBMGA000445
I
ENSBTAP00000014397-D1
Bos grunniens
ENSBTAP00000014397-D1
I
ENSBTAP00000017410-D1
Bos grunniens
ENSBTAP00000017410-D1
I
FOXN4
Bos taurus
ENSBTAG00000010847
I
FOXN1
Bos taurus
ENSBTAG00000013095
I
estExt_fgenesh2_pg.C_1860025
Branchiostoma floridae
estExt_fgenesh2_pg.C_1860025
I
fgenesh2_pg.scaffold_129000050
Branchiostoma floridae
fgenesh2_pg.scaffold_129000050
I
Brh_R000146
Buceros rhinoceros
Brh_R000146
I
Brh_R003679
Buceros rhinoceros
Brh_R003679
I
FOXN4
Callithrix jacchus
ENSCJAG00000010010
I
FOXN1
Callithrix jacchus
ENSCJAG00000012705
I
Aan_R003515
Calypte anna
Aan_R003515
I
Aan_R010366
Calypte anna
Aan_R010366
I
Cflo_09362--XP_394749.3_APIME
Camponotus floridanus
Cflo_09362--XP_394749.3_APIME
I
FOXN4
Canis familiaris
ENSCAFG00000010915
I
FOXN1
Canis familiaris
ENSCAFG00000018709
I
FOXN4
Cavia porcellus
ENSCPOG00000000942
I
FOXN1
Cavia porcellus
ENSCPOG00000009810
I
Cmyd_10015695
Chelonia mydas
Cmyd_10015695
I
Cmyd_10016296
Chelonia mydas
Cmyd_10016296
I
ENSCSAG00000002781
Chlorocebus sabaeus
ENSCSAG00000002781
I
ENSCSAG00000007275
Chlorocebus sabaeus
ENSCSAG00000007275
I
CLEC011741
Cimex lectularius
CLEC011741
I
CGI_10014633
Crassostrea gigas
CGI_10014633
I
CpipJ_CPIJ001711
Culex pipiens
CpipJ_CPIJ001711
I
CPIJ001711
Culex quinquefasciatus
CPIJ001711
I
KGM_21935
Danaus plexippus
KGM_21935
I
foxn4
Danio rerio
ENSDARG00000010591
I
foxn1
Danio rerio
ENSDARG00000011879
I
FOXN1
Dasypus novemcinctus
ENSDNOG00000006144
I
FOXN4
Dasypus novemcinctus
ENSDNOG00000015606
I
YQE_08440
Dendroctonus ponderosae
YQE_08440
I
Foxn1
Dipodomys ordii
ENSDORG00000015116
I
GF17528
Drosophila ananassae
FBgn0094546
I
GG17529
Drosophila erecta
FBgn0109754
I
GH19127
Drosophila grimshawi
FBgn0126594
I
jumu
Drosophila melanogaster
FBgn0015396
D
GI23584
Drosophila mojavensis
FBgn0146310
I
GA17887
Drosophila pseudoobscura
FBgn0077896
I
GA25156
Drosophila pseudoobscura
FBgn0246538
I
GM23879
Drosophila sechellia
FBgn0178744
I
GD18690
Drosophila simulans
FBgn0190211
I
GJ23559
Drosophila virilis
FBgn0210656
I
GK11545
Drosophila willistoni
FBgn0213556
I
GE26032
Drosophila yakuba
FBgn0243075
I
FOXN1
Echinops telfairi
ENSETEG00000015002
I
FOXN1
Equus caballus
ENSECAG00000010691
I
FOXN1
Erinaceus europaeus
ENSEEUG00000006629
I
FOXN4
Felis catus
ENSFCAG00000003124
I
FOXN1
Felis catus
ENSFCAG00000008268
I
ENSFALG00000006460
Ficedula albicollis
ENSFALG00000006460
I
ENSFALG00000008767
Ficedula albicollis
ENSFALG00000008767
I
ENSGMOG00000002294
Gadus morhua
ENSGMOG00000002294
I
ENSGMOG00000012022
Gadus morhua
ENSGMOG00000012022
I
ENSGALG00000003654
Gallus gallus
ENSGALG00000003654
I
FoxN4
Gallus gallus
ENSGALG00000005062
I
foxn1
Gasterosteus aculeatus
ENSGACG00000008619
I
foxn4
Gasterosteus aculeatus
ENSGACG00000009215
I
Gfo_R003176
Geospiza fortis
Gfo_R003176
I
Gfo_R011440
Geospiza fortis
Gfo_R011440
I
FOXN4
Gorilla gorilla
ENSGGOG00000009323
I
FOXN1
Gorilla gorilla
ENSGGOG00000009682
I
HHAL008872-PA
Halyomorpha halys
HHAL008872-PA
I
FOXN1
Homo sapiens
ENSG00000109101
D
FOXN4
Homo sapiens
ENSG00000139445
I
XP_002166457.1
Hydra magnipapillata
XP_002166457.1
I
ENSSTOG00000028800
Ictidomys tridecemlineatus
ENSSTOG00000028800
I
ENSSTOG00000028981
Ictidomys tridecemlineatus
ENSSTOG00000028981
I
ISCW008179
Ixodes scapularis
ISCW008179
I
ENSLACG00000011453
Latimeria chalumnae
ENSLACG00000011453
I
ENSLOCG00000000236
Lepisosteus oculatus
ENSLOCG00000000236
I
ENSLOCG00000004428
Lepisosteus oculatus
ENSLOCG00000004428
I
ENSLOCG00000005491
Lepisosteus oculatus
ENSLOCG00000005491
I
LDEC004155
Leptinotarsa decemlineata
LDEC004155
I
LotgiG77849
Lottia gigantea
LotgiG77849
I
FOXN1
Loxodonta africana
ENSLAFG00000014501
I
ENSLAFG00000031464
Loxodonta africana
ENSLAFG00000031464
I
LCUP000947
Lucilia cuprina
LCUP000947
I
LLOJ002533
Lutzomyia longipalpis
LLOJ002533
I
ENSP00000226247
Macaca fascicularis
ENSP00000226247
I
ENSP00000299162
Macaca fascicularis
ENSP00000299162
I
ENSMMUG00000020375
Macaca mulatta
ENSMMUG00000020375
I
FOXN1
Macaca mulatta
ENSMMUG00000021975
I
ENSMEUG00000015975
Macropus eugenii
ENSMEUG00000015975
I
FOXN1
Meleagris gallopavo
ENSMGAG00000005734
I
FOXN4
Meleagris gallopavo
ENSMGAG00000006116
I
FOXN1
Microcebus murinus
ENSMICG00000016795
I
FOXN1
Monodelphis domestica
ENSMODG00000019251
I
MDOA003678
Musca domestica
MDOA003678
I
ENSMPUG00000003606
Mustela putorius furo
ENSMPUG00000003606
I
ENSMPUG00000014265
Mustela putorius furo
ENSMPUG00000014265
I
Foxn1
Mus musculus
ENSMUSG00000002057
D
Foxn4
Mus musculus
ENSMUSG00000042002
D
Myotis_brandtii_Foxn1_10015981
Myotis brandtii
Myotis_brandtii_Foxn1_10015981
I
Myotis_brandtii_FOXN4_10027419
Myotis brandtii
Myotis_brandtii_FOXN4_10027419
I
FOXN1
Myotis lucifugus
ENSMLUG00000012353
I
NEMVEDRAFT_v1g121754
Nematostella vectensis
NEMVEDRAFT_v1g121754
I
ENSNLEG00000001602
Nomascus leucogenys
ENSNLEG00000001602
I
ENSNLEG00000002304
Nomascus leucogenys
ENSNLEG00000002304
I
FOXN4
Ochotona princeps
ENSOPRG00000006537
I
Ogr03484
Ophisaurus gracilis
Ogr03484
I
Ogr14394
Ophisaurus gracilis
Ogr14394
I
ENSONIG00000008179
Oreochromis niloticus
ENSONIG00000008179
I
ENSONIG00000013504
Oreochromis niloticus
ENSONIG00000013504
I
FOXN4
Ornithorhynchus anatinus
ENSOANG00000008810
I
ENSOANG00000014185
Ornithorhynchus anatinus
ENSOANG00000014185
I
FOXN4
Oryctolagus cuniculus
ENSOCUG00000005185
I
FOXN1
Oryctolagus cuniculus
ENSOCUG00000013779
I
FOXN4
Oryzias latipes
ENSORLG00000007587
I
ENSORLG00000008113
Oryzias latipes
ENSORLG00000008113
I
FOXN1
Otolemur garnettii
ENSOGAG00000007093
I
FOXN4
Otolemur garnettii
ENSOGAG00000007455
I
ENSOARG00000016041
Ovis aries
ENSOARG00000016041
I
ENSOARG00000018638
Ovis aries
ENSOARG00000018638
I
FOXN4
Pan troglodytes
ENSPTRG00000005421
I
FOXN1
Pan troglodytes
ENSPTRG00000008920
I
ENSPANG00000019523
Papio anubis
ENSPANG00000019523
I
ENSPANG00000023451
Papio anubis
ENSPANG00000023451
I
PHUM047550
Pediculus humanus
PHUM047550
I
ENSPSIG00000004744
Pelodiscus sinensis
ENSPSIG00000004744
I
ENSPSIG00000009226
Pelodiscus sinensis
ENSPSIG00000009226
I
ENSPMAG00000004307
Petromyzon marinus
ENSPMAG00000004307
I
PPAI007934
Phlebotomus papatasi
PPAI007934
I
ENSPFOG00000006570
Poecilia formosa
ENSPFOG00000006570
I
ENSPFOG00000013538
Poecilia formosa
ENSPFOG00000013538
I
Pvit_00420
Pogona vitticeps
Pvit_00420
I
Pvit_02436
Pogona vitticeps
Pvit_02436
I
ENSPPYG00000004931
Pongo abelii
ENSPPYG00000004931
I
ENSPPYG00000008096
Pongo abelii
ENSPPYG00000008096
I
FOXN1
Procavia capensis
ENSPCAG00000010796
I
FOXN1
Pteropus vampyrus
ENSPVAG00000002892
I
FOXN4
Pteropus vampyrus
ENSPVAG00000007463
I
Foxn4
Rattus norvegicus
ENSRNOG00000000691
I
Foxn1
Rattus norvegicus
ENSRNOG00000010870
I
RPRC003475
Rhodnius prolixus
RPRC003475
I
Sakowv30034418m.g
Saccoglossus kowalevskii
Sakowv30034418m.g
I
ENSSHAG00000013650
Sarcophilus harrisii
ENSSHAG00000013650
I
SINV24088
Solenopsis invicta
SINV24088
I
ENSSARG00000006773
Sorex araneus
ENSSARG00000006773
I
SMAR013946
Strigamia maritima
SMAR013946
I
ENSSSCG00000009936
Sus scrofa
ENSSSCG00000009936
I
FOXN1
Sus scrofa
ENSSSCG00000017762
I
ENSSSCG00000022921
Sus scrofa
ENSSSCG00000022921
I
ENSSSCG00000029194
Sus scrofa
ENSSSCG00000029194
I
FOXN1
Taeniopygia guttata
ENSTGUG00000005999
I
FOXN4
Taeniopygia guttata
ENSTGUG00000007235
I
foxn4
Takifugu rubripes
ENSTRUG00000015456
I
foxn4
Tetraodon nigroviridis
ENSTNIG00000015894
I
TC012532
Tribolium castaneum
TC012532
I
FOXN4
Tupaia belangeri
ENSTBEG00000005233
I
FOXN1
Tupaia belangeri
ENSTBEG00000007940
I
FOXN1
Tursiops truncatus
ENSTTRG00000004014
I
FOXN4
Tursiops truncatus
ENSTTRG00000006397
I
Tal_R000657
Tyto alba
Tal_R000657
I
Tal_R011069
Tyto alba
Tal_R011069
I
foxn4.S
Xenopus laevis
XB-GENE-981090
I
foxn4
Xenopus tropicalis
XB-GENE-981086
I
XP_002937190
Xenopus tropicalis
XP_002937190
I
ENSXMAG00000007879
Xiphophorus maculatus
ENSXMAG00000007879
I
ENSXMAG00000011786
Xiphophorus maculatus
ENSXMAG00000011786
I
L798_10143
Zootermopsis nevadensis
L798_10143
I