ENSPSIG00000004830 (Pelodiscus sinensis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSPSIG00000004830 T214861_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Hoxd10
M00509_2.00
Mus musculus
NNNNNNNN

NNNNNNNN
PBM
Berger et al.(2008)
Hoxd10_2368
0.860 0.982
HOXD10
M05112_2.00
Homo sapiens
NKTTTATKRC

GYMATAAAMN
SELEX
Yin et al.(2017)
HOXD10_eDBD_HT-SELEX_1
0.860 0.982
HOXD10
M05113_2.00
Homo sapiens
RTCGTAAAHN

NDTTTACGAY
SELEX
Yin et al.(2017)
HOXD10_eDBD_HT-SELEX_2
0.860 0.982
HOXD10
M05116_2.00
Homo sapiens
RGTCGTAAAAH

DTTTTACGACY
SELEX
Yin et al.(2017)
HOXD10_FL_HT-SELEX_1
0.860 0.982
HOXD10
M05117_2.00
Homo sapiens
RRYMATAAAAH

DTTTTATKRYY
SELEX
Yin et al.(2017)
HOXD10_FL_HT-SELEX_2
0.860 0.982
HOXD10
M10687_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HOXD10_Q2
0.860 0.982
HOXD10
M10688_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HOXD10_Q6
0.860 0.982
HOXD10
M05114_2.00
Homo sapiens
NTTTTATKRC

GYMATAAAAN
SELEX
Yin et al.(2017)
HOXD10_eDBD_Methyl-HT-SELEX_1
0.860 0.982
HOXD10
M05115_2.00
Homo sapiens
GTCGTAAAHN

NDTTTACGAC
SELEX
Yin et al.(2017)
HOXD10_eDBD_Methyl-HT-SELEX_2
0.860 0.982
HOXD10
M05118_2.00
Homo sapiens
VGTCGTAAAAH

DTTTTACGACB
SELEX
Yin et al.(2017)
HOXD10_FL_Methyl-HT-SELEX_1
0.860 0.982
HOXD10
M05119_2.00
Homo sapiens
DGYAATAAAAH

DTTTTATTRCH
SELEX
Yin et al.(2017)
HOXD10_FL_Methyl-HT-SELEX_2
0.860 0.982
Hoxa10
M00382_2.00
Mus musculus
NHWAYNNNN

NNNNRTWDN
PBM
Berger et al.(2008)
Hoxa10_2318
0.859 0.947
HOXA10
M05394_2.00
Homo sapiens
RRTCGTAAAAH

DTTTTACGAYY
SELEX
Yin et al.(2017)
HOXA10_eDBD_HT-SELEX_1
0.859 0.947
HOXA10
M05395_2.00
Homo sapiens
NTTTTATKRCY

RGYMATAAAAN
SELEX
Yin et al.(2017)
HOXA10_eDBD_HT-SELEX_2
0.859 0.947
HOXA10
M05398_2.00
Homo sapiens
NRTCRTWAANN

NNTTWAYGAYN
SELEX
Yin et al.(2017)
HOXA10_FL_HT-SELEX_1
0.859 0.947
HOXA10
M05399_2.00
Homo sapiens
NNTTWATKRCN

NGYMATWAANN
SELEX
Yin et al.(2017)
HOXA10_FL_HT-SELEX_2
0.859 0.947
Hoxa10
M09170_2.00
Mus musculus
DCATAAAYYRBH

DVYRRTTTATGH
Misc
Kulakovskiy et al.(2013)
HXA10_MOUSE.H11MO.0.C
0.859 0.947
Hoxa10
M10763_2.00
Mus musculus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HOXA10_Q5
0.859 0.947
HOXA10
M05396_2.00
Homo sapiens
NGTCGTAAAWN

NWTTTACGACN
SELEX
Yin et al.(2017)
HOXA10_eDBD_Methyl-HT-SELEX_1
0.859 0.947
HOXA10
M05397_2.00
Homo sapiens
NTTTTATKRCB

VGYMATAAAAN
SELEX
Yin et al.(2017)
HOXA10_eDBD_Methyl-HT-SELEX_2
0.859 0.947
HOXA10
M05400_2.00
Homo sapiens
NRTCGTWAANN

NNTTWACGAYN
SELEX
Yin et al.(2017)
HOXA10_FL_Methyl-HT-SELEX_1
0.859 0.947
HOXA10
M05401_2.00
Homo sapiens
NNTTWATKRYN

NRYMATWAANN
SELEX
Yin et al.(2017)
HOXA10_FL_Methyl-HT-SELEX_2
0.859 0.947
Hoxc10
M00421_2.00
Mus musculus
TTWATKAB

VTMATWAA
PBM
Berger et al.(2008)
Hoxc10_2779
0.855 0.982
HOXC10
M03228_2.00
Homo sapiens
DTTTWATKDB

VHMATWAAAH
SELEX
Jolma et al.(2013)
HOXC10_1
0.855 0.982
HOXC10
M03229_2.00
Homo sapiens
NNTTWATKRB

VYMATWAANN
SELEX
Jolma et al.(2013)
HOXC10_2
0.855 0.982
HOXC10
M03230_2.00
Homo sapiens
NWTTWAYGAB

VTCRTWAAWN
SELEX
Jolma et al.(2013)
HOXC10_3
0.855 0.982
Hoxc10
M03252_2.00
Mus musculus
DTTTWAYGAY

RTCRTWAAAH
SELEX
Jolma et al.(2013)
Hoxc10_1
0.855 0.982
Hoxc10
M03253_2.00
Mus musculus
DTTTWATKRY

RYMATWAAAH
SELEX
Jolma et al.(2013)
Hoxc10_2
0.855 0.982
HOXC10
M05335_2.00
Homo sapiens
NDTTTATKRCN

NGYMATAAAHN
SELEX
Yin et al.(2017)
HOXC10_eDBD_HT-SELEX_1
0.855 0.982
HOXC10
M05336_2.00
Homo sapiens
NRTCGTAAAHN

NDTTTACGAYN
SELEX
Yin et al.(2017)
HOXC10_eDBD_HT-SELEX_2
0.855 0.982
HOXC10
M05339_2.00
Homo sapiens
NTTTTATKRCN

NGYMATAAAAN
SELEX
Yin et al.(2017)
HOXC10_FL_HT-SELEX_1
0.855 0.982
HOXC10
M05340_2.00
Homo sapiens
NRTCGTAAAWN

NWTTTACGAYN
SELEX
Yin et al.(2017)
HOXC10_FL_HT-SELEX_2
0.855 0.982
HOXC10
M05337_2.00
Homo sapiens
NTTTTATKRCN

NGYMATAAAAN
SELEX
Yin et al.(2017)
HOXC10_eDBD_Methyl-HT-SELEX_1
0.855 0.982
HOXC10
M05338_2.00
Homo sapiens
NRTCGTAAAHN

NDTTTACGAYN
SELEX
Yin et al.(2017)
HOXC10_eDBD_Methyl-HT-SELEX_2
0.855 0.982
HOXC10
M05341_2.00
Homo sapiens
DTTTTATKRCH

DGYMATAAAAH
SELEX
Yin et al.(2017)
HOXC10_FL_Methyl-HT-SELEX_1
0.855 0.982
HOXC10
M05342_2.00
Homo sapiens
VGTCGTAAAHN

NDTTTACGACB
SELEX
Yin et al.(2017)
HOXC10_FL_Methyl-HT-SELEX_2
0.855 0.982
Hoxa9
M00475_2.00
Mus musculus
NNDDBNNN

NNNVHHNN
PBM
Berger et al.(2008)
Hoxa9_2622
0.806 0.842
HOXA9
M03085_2.00
Homo sapiens
NNDTTWAYGAYN

NRTCRTWAAHNN
SELEX
Jolma et al.(2013)
HOXA10_1
0.806 0.842
HOXA9
M03086_2.00
Homo sapiens
NDTTWATKRYN

NRYMATWAAHN
SELEX
Jolma et al.(2013)
HOXA10_2
0.806 0.842
HOXA9
M04932_2.00
Homo sapiens
NNDWWABKRC

GYMVTWWHNN
SELEX
Yin et al.(2017)
HOXA9_FL_HT-SELEX_1
0.806 0.842
HOXA9
M04933_2.00
Homo sapiens
NNDTWAYGRB

VYCRTWAHNN
SELEX
Yin et al.(2017)
HOXA9_FL_HT-SELEX_2
0.806 0.842
Hoxa9
M08138_2.00
Mus musculus
TGATTKATKRB

VYMATMAATCA
ChIP-seq
Mathelier et al.(2014)
MA0594.1
0.806 0.842
HOXA9
M09130_2.00
Homo sapiens
DCATAAAYYRBH

DVYRRTTTATGH
Misc
Kulakovskiy et al.(2013)
HXA10_HUMAN.H11MO.0.C
0.806 0.842
HOXA9
M09131_2.00
Homo sapiens
HHATAAATCAH

DTGATTTATDD
Misc
Kulakovskiy et al.(2013)
HXA9_HUMAN.H11MO.0.B
0.806 0.842
Hoxa9
M09203_2.00
Mus musculus
HHATAAATCAH

DTGATTTATDD
Misc
Kulakovskiy et al.(2013)
HXA9_MOUSE.H11MO.0.B
0.806 0.842
Hoxa9
M09575_2.00
Mus musculus
WGATTKATDRBY

RVYHATMAATCW
Misc
Heinz et al.(2010)
HSC-Hoxa9_GSE33509
0.806 0.842
HOXA9
M10642_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HOXA10_Q6
0.806 0.842
HOXA9
M10643_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HOXA9_04
0.806 0.842
HOXA9
M10644_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HOXA9_Q5_01
0.806 0.842
HOXA9
M10645_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HOXA9_Q5
0.806 0.842
HOXA9
M04934_2.00
Homo sapiens
NNDTWAYKRC

GYMRTWAHNN
SELEX
Yin et al.(2017)
HOXA9_FL_Methyl-HT-SELEX_1
0.806 0.842
HOXA9
M04935_2.00
Homo sapiens
NNDTWACGAY

RTCGTWAHNN
SELEX
Yin et al.(2017)
HOXA9_FL_Methyl-HT-SELEX_2
0.806 0.842
Hoxd9
M03282_2.00
Mus musculus
TTTWATKKB

VMMATWAAA
SELEX
Jolma et al.(2013)
Hoxd9_1
0.806 0.825
Hoxd9
M03283_2.00
Mus musculus
DWTTWATKRY

RYMATWAAWH
SELEX
Jolma et al.(2013)
Hoxd9_2
0.806 0.825
Hoxd9
M03284_2.00
Mus musculus
DTTWAYGRB

VYCRTWAAH
SELEX
Jolma et al.(2013)
Hoxd9_3
0.806 0.825
HOXC9
M05331_2.00
Homo sapiens
GTCGTAAAAN

NTTTTACGAC
SELEX
Yin et al.(2017)
HOXC9_FL_HT-SELEX_1
0.806 0.825
HOXC9
M05332_2.00
Homo sapiens
NTTTTATKRC

GYMATAAAAN
SELEX
Yin et al.(2017)
HOXC9_FL_HT-SELEX_2
0.806 0.825
HOXD9
M05104_2.00
Homo sapiens
NTTTTATKRC

GYMATAAAAN
SELEX
Yin et al.(2017)
HOXD9_eDBD_HT-SELEX_1
0.806 0.825
HOXD9
M05105_2.00
Homo sapiens
RTCRTAAAWN

NWTTTAYGAY
SELEX
Yin et al.(2017)
HOXD9_eDBD_HT-SELEX_2
0.806 0.825
HOXD9
M05108_2.00
Homo sapiens
RTCGTAAAWN

NWTTTACGAY
SELEX
Yin et al.(2017)
HOXD9_FL_HT-SELEX_1
0.806 0.825
HOXD9
M05109_2.00
Homo sapiens
NTTTTATKRC

GYMATAAAAN
SELEX
Yin et al.(2017)
HOXD9_FL_HT-SELEX_2
0.806 0.825
HOXC9
M09161_2.00
Homo sapiens
HTTWATKGCH

DGCMATWAAD
Misc
Kulakovskiy et al.(2013)
HXC9_HUMAN.H11MO.0.C
0.806 0.825
HOXD9
M10686_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HOXD9_Q2
0.806 0.825
HOXC9
M05333_2.00
Homo sapiens
RTCGTAAAHN

NDTTTACGAY
SELEX
Yin et al.(2017)
HOXC9_FL_Methyl-HT-SELEX_1
0.806 0.825
HOXC9
M05334_2.00
Homo sapiens
NTTTWATKRC

GYMATWAAAN
SELEX
Yin et al.(2017)
HOXC9_FL_Methyl-HT-SELEX_2
0.806 0.825
HOXD9
M05106_2.00
Homo sapiens
NNTTWATKRC

GYMATWAANN
SELEX
Yin et al.(2017)
HOXD9_eDBD_Methyl-HT-SELEX_1
0.806 0.825
HOXD9
M05107_2.00
Homo sapiens
RTCGTAAANN

NNTTTACGAY
SELEX
Yin et al.(2017)
HOXD9_eDBD_Methyl-HT-SELEX_2
0.806 0.825
HOXD9
M05110_2.00
Homo sapiens
RTCGTAAANN

NNTTTACGAY
SELEX
Yin et al.(2017)
HOXD9_FL_Methyl-HT-SELEX_1
0.806 0.825
HOXD9
M05111_2.00
Homo sapiens
NDTTWATKRC

GYMATWAAHN
SELEX
Yin et al.(2017)
HOXD9_FL_Methyl-HT-SELEX_2
0.806 0.825
Hoxb9
M00410_2.00
Mus musculus
NTTWAYDDNN

NNHHRTWAAN
PBM
Berger et al.(2008)
Hoxb9_3413
0.806 0.807
HOXB9
M05289_2.00
Homo sapiens
RTCRTAAAWN

NWTTTAYGAY
SELEX
Yin et al.(2017)
HOXB9_eDBD_HT-SELEX_1
0.806 0.807
HOXB9
M05290_2.00
Homo sapiens
NTTTWATKRC

GYMATWAAAN
SELEX
Yin et al.(2017)
HOXB9_eDBD_HT-SELEX_2
0.806 0.807
HOXB9
M05291_2.00
Homo sapiens
GTCGTAAAHB

VDTTTACGAC
SELEX
Yin et al.(2017)
HOXB9_eDBD_Methyl-HT-SELEX
0.806 0.807
Hoxc9
M00470_2.00
Mus musculus
NGTAATWAAN

NTTWATTACN
PBM
Berger et al.(2008)
Hoxc9_2367
0.798 0.807
Hoxc9
M08137_2.00
Mus musculus
NWGATTTATDGSH

DSCHATAAATCWN
ChIP-seq
Mathelier et al.(2014)
MA0485.1
0.798 0.807
Hoxc9
M09574_2.00
Mus musculus
TGATTTATDGCH

DGCHATAAATCA
Misc
Heinz et al.(2010)
Ainv15-Hoxc9_GSE21812
0.798 0.807
Hoxd11
M00493_2.00
Mus musculus
DDDNNNNN

NNNNNHHH
PBM
Berger et al.(2008)
Hoxd11_3873
0.766 0.719
HOXD11
M03139_2.00
Homo sapiens
RTCGTAAAWH

DWTTTACGAY
SELEX
Jolma et al.(2013)
HOXD11_1
0.766 0.719
HOXD11
M03140_2.00
Homo sapiens
TTTWATKRBH

DVYMATWAAA
SELEX
Jolma et al.(2013)
HOXD11_2
0.766 0.719
HOXD11
M05120_2.00
Homo sapiens
NRTCGTWAANNDTWAH

DTWAHNNTTWACGAYN
SELEX
Yin et al.(2017)
HOXD11_eDBD_HT-SELEX
0.766 0.719
HOXD11
M05121_2.00
Homo sapiens
NRTCGTWAAHNDTWAH

DTWAHNDTTWACGAYN
SELEX
Yin et al.(2017)
HOXD11_eDBD_Methyl-HT-SELEX
0.766 0.719
Hoxc11
M00390_2.00
Mus musculus
NTTWAYDDBN

NVHHRTWAAN
PBM
Berger et al.(2008)
Hoxc11_3718
0.766 0.702
Hoxa11
M00474_2.00
Mus musculus
NNHNHNNNN

NNNNDNDNN
PBM
Berger et al.(2008)
Hoxa11_2218
0.766 0.702
HOXC11
M03131_2.00
Homo sapiens
NWTTWAYGAYH

DRTCRTWAAWN
SELEX
Jolma et al.(2013)
HOXC11_1
0.766 0.702
HOXC11
M03132_2.00
Homo sapiens
NWTTWATKRBH

DVYMATWAAWN
SELEX
Jolma et al.(2013)
HOXC11_2
0.766 0.702
HOXC11
M03133_2.00
Homo sapiens
DRTCGTWAAWN

NWTTWACGAYH
SELEX
Jolma et al.(2013)
HOXC11_3
0.766 0.702
HOXC11
M03134_2.00
Homo sapiens
NTTTTATKRBN

NVYMATAAAAN
SELEX
Jolma et al.(2013)
HOXC11_4
0.766 0.702
Hoxa11
M03274_2.00
Mus musculus
NNDTTWAYGABN

NVTCRTWAAHNN
SELEX
Jolma et al.(2013)
Hoxa11_1
0.766 0.702
Hoxa11
M03275_2.00
Mus musculus
NDTTWATKRNN

NNYMATWAAHN
SELEX
Jolma et al.(2013)
Hoxa11_2
0.766 0.702
HOXA11
M04897_2.00
Homo sapiens
VGTCGTAAAWH

DWTTTACGACB
SELEX
Yin et al.(2017)
HOXA11_eDBD_HT-SELEX_1
0.766 0.702
HOXA11
M04898_2.00
Homo sapiens
DDTTWATKRSN

NSYMATWAAHH
SELEX
Yin et al.(2017)
HOXA11_eDBD_HT-SELEX_2
0.766 0.702
HOXC11
M05075_2.00
Homo sapiens
NDTTWACGAYN

NRTCGTWAAHN
SELEX
Yin et al.(2017)
HOXC11_eDBD_HT-SELEX_1
0.766 0.702
HOXC11
M05076_2.00
Homo sapiens
NWTTWATKRCH

DGYMATWAAWN
SELEX
Yin et al.(2017)
HOXC11_eDBD_HT-SELEX_2
0.766 0.702
HOXC11
M05079_2.00
Homo sapiens
NRTCGTWAAHN

NDTTWACGAYN
SELEX
Yin et al.(2017)
HOXC11_FL_HT-SELEX_1
0.766 0.702
HOXC11
M05080_2.00
Homo sapiens
NDTTWATKRSN

NSYMATWAAHN
SELEX
Yin et al.(2017)
HOXC11_FL_HT-SELEX_2
0.766 0.702
HOXA11
M04899_2.00
Homo sapiens
NRTCGTAAAWH

DWTTTACGAYN
SELEX
Yin et al.(2017)
HOXA11_eDBD_Methyl-HT-SELEX_1
0.766 0.702
HOXA11
M04900_2.00
Homo sapiens
DYTTTATKRCH

DGYMATAAARH
SELEX
Yin et al.(2017)
HOXA11_eDBD_Methyl-HT-SELEX_2
0.766 0.702
HOXC11
M05077_2.00
Homo sapiens
NRTCGTAAAHN

NDTTTACGAYN
SELEX
Yin et al.(2017)
HOXC11_eDBD_Methyl-HT-SELEX_1
0.766 0.702
HOXC11
M05078_2.00
Homo sapiens
NDTTTATKRSN

NSYMATAAAHN
SELEX
Yin et al.(2017)
HOXC11_eDBD_Methyl-HT-SELEX_2
0.766 0.702
HOXC11
M05081_2.00
Homo sapiens
NRTCGTWAANN

NNTTWACGAYN
SELEX
Yin et al.(2017)
HOXC11_FL_Methyl-HT-SELEX_1
0.766 0.702
HOXC11
M05082_2.00
Homo sapiens
NNTTWAYKRSN

NSYMRTWAANN
SELEX
Yin et al.(2017)
HOXC11_FL_Methyl-HT-SELEX_2
0.766 0.702
Abd-B
M00554_2.00
Drosophila melanogaster
NWTWAYDDNN

NNHHRTWAWN
PBM
Busser et al.(2012a)
Abd-B
0.651 0.684
Abd-B
M03772_2.00
Drosophila melanogaster
DRTCRTAAAWH

DWTTTAYGAYH
SELEX
Nitta et al.(2015)
Abd-B_1
0.651 0.684
Abd-B
M03773_2.00
Drosophila melanogaster
DTTTTATKRCY

RGYMATAAAAH
SELEX
Nitta et al.(2015)
Abd-B_2
0.651 0.684
Abd-B
M03774_2.00
Drosophila melanogaster
NKCARYAACGACYW

WRGTCGTTRYTGMN
SELEX
Nitta et al.(2015)
Abd-B_3
0.651 0.684
Abd-B
M03775_2.00
Drosophila melanogaster
DTTTWATGKSTTTY

RAAASMCATWAAAH
SELEX
Nitta et al.(2015)
Abd-B_4
0.651 0.684
Abd-B
M06476_2.00
Drosophila melanogaster
TTTATKR

YMATAAA
B1H
Mathelier et al.(2014)
MA0165.1
0.651 0.684
Abd-B
M06211_2.00
Drosophila melanogaster
YCATAAAA

TTTTATGR
B1H
Zhu et al.(2011)
Abd-B_FlyReg_FBgn0000015
0.651 0.684
Abd-B
M09672_2.00
Drosophila melanogaster
YMATAAAAHH

DDTTTTATKR
Misc
Kulakovskiy et al.(2009)
Abd-B
0.651 0.684
Abd-B
M10779_2.00
Drosophila melanogaster
VSNTTDATKRCNNN

NNNGYMATHAANSB
Transfac
Matys et al.(2006)
I$ABDB_01
0.651 0.684
Abd-B
M10780_2.00
Drosophila melanogaster Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
I$ABDB_Q6
0.651 0.684
abd-A
M03770_2.00
Drosophila melanogaster
NNTAATKRCN

NGYMATTANN
SELEX
Nitta et al.(2015)
abd-A_1
0.623 0.702
abd-A
M03771_2.00
Drosophila melanogaster
NNTAATKRCN

NGYMATTANN
SELEX
Nitta et al.(2015)
abd-A_2
0.623 0.702
abd-A
M06475_2.00
Drosophila melanogaster
TTAATKA

TMATTAA
B1H
Mathelier et al.(2014)
MA0206.1
0.623 0.702
abd-A
M06210_2.00
Drosophila melanogaster
WTWATKDM

KHMATWAW
B1H
Zhu et al.(2011)
Abd-A_FlyReg_FBgn0000014
0.623 0.702
abd-A
M09671_2.00
Drosophila melanogaster
HTAATKRH

DYMATTAD
Misc
Kulakovskiy et al.(2009)
abd-A
0.623 0.702
abd-A
M10778_2.00
Drosophila melanogaster Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
I$ABDA_Q6
0.623 0.702
Ubx
M00558_2.00
Drosophila melanogaster
NWWAYDDNN

NNHHRTWWN
PBM
Busser et al.(2012a)
Ubx
0.614 0.667
Ubx
M03804_2.00
Drosophila melanogaster
NTAATKRH

DYMATTAN
SELEX
Nitta et al.(2015)
Ubx_1
0.614 0.667
Ubx
M06499_2.00
Drosophila melanogaster
NTTAATKR

YMATTAAN
B1H
Mathelier et al.(2014)
MA0094.2
0.614 0.667
Ubx
M06273_2.00
Drosophila melanogaster
NTTAATKR

YMATTAAN
B1H
Zhu et al.(2011)
Ubx_Cell_FBgn0003944
0.614 0.667
Ubx
M06274_2.00
Drosophila melanogaster
TAATKD

HMATTA
B1H
Zhu et al.(2011)
Ubx_FlyReg_FBgn0003944
0.614 0.667
Ubx
M06275_2.00
Drosophila melanogaster
NTTWATKR

YMATWAAN
B1H
Zhu et al.(2011)
Ubx_SOLEXA_FBgn0003944
0.614 0.667
Ubx
M09680_2.00
Drosophila melanogaster
TTAATKR

YMATTAA
Misc
Kulakovskiy et al.(2009)
Ubx
0.614 0.667
Ubx
M10788_2.00
Drosophila melanogaster
NNVNNNNTAATKRNBHNND

HNNDVNYMATTANNNNBNN
Transfac
Matys et al.(2006)
I$UBX_01
0.614 0.667
CBG00023
M02062_2.00
Caenorhabditis briggsae
NWWATKDNNN

NNNHMATWWN
PBM
Weirauch et al.(2014)
pTH5778
0.608 0.491
egl-5
M09581_2.00
Caenorhabditis elegans
DWTTWATGGS

SCCATWAAWH
Misc
Heinz et al.(2010)
cElegans-L3-EGL5_modEncode
0.608 0.491
Hoxa6
M00494_2.00
Mus musculus
NWWATKRNN

NNYMATWWN
PBM
Berger et al.(2008)
Hoxa6_1040
0.607 0.684
HOXA6
M04974_2.00
Homo sapiens
NNTAATKRVN

NBYMATTANN
SELEX
Yin et al.(2017)
HOXA6_eDBD_HT-SELEX
0.607 0.684
HOXA6
M04975_2.00
Homo sapiens
NNTAATKRBN

NVYMATTANN
SELEX
Yin et al.(2017)
HOXA6_eDBD_Methyl-HT-SELEX_1
0.607 0.684
HOXA6
M04976_2.00
Homo sapiens
NTAAYGRY

RYCRTTAN
SELEX
Yin et al.(2017)
HOXA6_eDBD_Methyl-HT-SELEX_2
0.607 0.684
Hoxc6
M00392_2.00
Mus musculus
TTAATTAB

VTAATTAA
PBM
Berger et al.(2008)
Hoxc6_3954
0.607 0.667
Hoxc12
M00508_2.00
Mus musculus
NDTWAYNDBN

NVHNRTWAHN
PBM
Berger et al.(2008)
Hoxc12_3480
0.605 0.649
HOXC12
M03135_2.00
Homo sapiens
TTTTATTRY

RYAATAAAA
SELEX
Jolma et al.(2013)
HOXC12_1
0.605 0.649
HOXC12
M03136_2.00
Homo sapiens
RRTCGTAAAAH

DTTTTACGAYY
SELEX
Jolma et al.(2013)
HOXC12_2
0.605 0.649
HOXC12
M05083_2.00
Homo sapiens
NGYAATAAAAN

NTTTTATTRCN
SELEX
Yin et al.(2017)
HOXC12_eDBD_HT-SELEX_1
0.605 0.649
HOXC12
M05084_2.00
Homo sapiens
VRTCGTAAAHN

NDTTTACGAYB
SELEX
Yin et al.(2017)
HOXC12_eDBD_HT-SELEX_2
0.605 0.649
HOXC12
M05085_2.00
Homo sapiens
NGYAATAAAAH

DTTTTATTRCN
SELEX
Yin et al.(2017)
HOXC12_eDBD_Methyl-HT-SELEX_1
0.605 0.649
HOXC12
M05086_2.00
Homo sapiens
NRTCGTAAAHH

DDTTTACGAYN
SELEX
Yin et al.(2017)
HOXC12_eDBD_Methyl-HT-SELEX_2
0.605 0.649
Hoxd12_CONSTRUCT
M00538_2.00
PBM CONSTRUCTS
NWTWAYNDBN

NVHNRTWAWN
PBM
Berger et al.(2008)
Hoxd12_3481
0.605 0.632
HOXD12
M03206_2.00
Homo sapiens
SYAATAAAA

TTTTATTRS
SELEX
Jolma et al.(2013)
HOXD12_1
0.605 0.632
HOXD12
M03207_2.00
Homo sapiens
RVTCGTAAAAH

DTTTTACGABY
SELEX
Jolma et al.(2013)
HOXD12_2
0.605 0.632
HOXD12
M03208_2.00
Homo sapiens
NRTCGTAAAHN

NDTTTACGAYN
SELEX
Jolma et al.(2013)
HOXD12_3
0.605 0.632
HOXD12
M03209_2.00
Homo sapiens
DTTWATYRC

GYRATWAAH
SELEX
Jolma et al.(2013)
HOXD12_4
0.605 0.632
HOXD12
M05279_2.00
Homo sapiens
NKTWACGAYN

NRTCGTWAMN
SELEX
Yin et al.(2017)
HOXD12_eDBD_HT-SELEX
0.605 0.632
HOXD12
M05280_2.00
Homo sapiens
NRTCGTAAAH

DTTTACGAYN
SELEX
Yin et al.(2017)
HOXD12_eDBD_Methyl-HT-SELEX
0.605 0.632
Q8I9J5_9BILA
M02214_2.00
Spadella cephaloptera
NVTAWTWABN

NVTWAWTABN
PBM
Weirauch et al.(2014)
pTH6164
0.605 0.579
Hoxc8
M00391_2.00
Mus musculus
NNDNYNNNN

NNNNRNHNN
PBM
Berger et al.(2008)
Hoxc8_3429
0.605 0.702
Hoxd8
M00436_2.00
Mus musculus
NNWWYNNN

NNNRWWNN
PBM
Berger et al.(2008)
Hoxd8_2644
0.605 0.702
Hoxb8
M00517_2.00
Mus musculus
NWWAYNDNN

NNHNRTWWN
PBM
Berger et al.(2008)
Hoxb8_3780
0.605 0.702
HOXD8
M03221_2.00
Homo sapiens
VHWAATKWDN

NHWMATTWDB
SELEX
Jolma et al.(2013)
HOXD8_1
0.605 0.702
HOXB8
M05048_2.00
Homo sapiens
NTAATKRM

KYMATTAN
SELEX
Yin et al.(2017)
HOXB8_eDBD_HT-SELEX
0.605 0.702
HOXC8
M04912_2.00
Homo sapiens
NYAATTRN

NYAATTRN
SELEX
Yin et al.(2017)
HOXC8_FL_HT-SELEX
0.605 0.702
HOXD8
M05310_2.00
Homo sapiens
BTAATKRY

RYMATTAV
SELEX
Yin et al.(2017)
HOXD8_eDBD_HT-SELEX
0.605 0.702
HOXB8
M09141_2.00
Homo sapiens
BMATHAATCAA

TTGATTDATKV
Misc
Kulakovskiy et al.(2013)
HXB8_HUMAN.H11MO.0.C
0.605 0.702
Hoxb8
M09214_2.00
Mus musculus
BMATHAATCAA

TTGATTDATKV
Misc
Kulakovskiy et al.(2013)
HXB8_MOUSE.H11MO.0.C
0.605 0.702
HOXC8
M10636_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HOXC8_Q3
0.605 0.702
HOXB8
M05049_2.00
Homo sapiens
NTAATKRN

NYMATTAN
SELEX
Yin et al.(2017)
HOXB8_eDBD_Methyl-HT-SELEX_1
0.605 0.702
HOXB8
M05050_2.00
Homo sapiens
NTAAYGAY

RTCRTTAN
SELEX
Yin et al.(2017)
HOXB8_eDBD_Methyl-HT-SELEX_2
0.605 0.702
HOXC8
M04913_2.00
Homo sapiens
NYMATKRN

NYMATKRN
SELEX
Yin et al.(2017)
HOXC8_FL_Methyl-HT-SELEX_1
0.605 0.702
HOXC8
M04914_2.00
Homo sapiens
NTWAYGRY

RYCRTWAN
SELEX
Yin et al.(2017)
HOXC8_FL_Methyl-HT-SELEX_2
0.605 0.702
HOXD8
M05311_2.00
Homo sapiens
NTAATKRN

NYMATTAN
SELEX
Yin et al.(2017)
HOXD8_eDBD_Methyl-HT-SELEX_1
0.605 0.702
HOXD8
M05312_2.00
Homo sapiens
NTWAYGRY

RYCRTWAN
SELEX
Yin et al.(2017)
HOXD8_eDBD_Methyl-HT-SELEX_2
0.605 0.702
Hoxb6
M00381_2.00
Mus musculus
NNDHNNN

NNNDHNN
PBM
Berger et al.(2008)
Hoxb6_3428
0.603 0.667
HOXB6
M04999_2.00
Homo sapiens
NTAATKRY

RYMATTAN
SELEX
Yin et al.(2017)
HOXB6_eDBD_HT-SELEX
0.603 0.667
HOXB6
M05000_2.00
Homo sapiens
HTAAYGAY

RTCRTTAD
SELEX
Yin et al.(2017)
HOXB6_eDBD_Methyl-HT-SELEX_1
0.603 0.667
HOXB6
M05001_2.00
Homo sapiens
NTWATKRB

VYMATWAN
SELEX
Yin et al.(2017)
HOXB6_eDBD_Methyl-HT-SELEX_2
0.603 0.667
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSPSIP00000005176 Homeodomain 273 329

Links

Other Homeodomain family TFs
Other Pelodiscus sinensis TFs

1391 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ACYPI21591 Acyrthosiphon pisum ACYPI21591 I
AAEL018187 Aedes aegypti AAEL018187 I
ENSAMEG00000004934 Ailuropoda melanoleuca ENSAMEG00000004934 I
ENSAMEG00000016548 Ailuropoda melanoleuca ENSAMEG00000016548 I
Alligator_sinensis_CCG002668.1 Alligator sinensis Alligator_sinensis_CCG002668.1 I
Alligator_sinensis_CCG016523.1 Alligator sinensis Alligator_sinensis_CCG016523.1 I
ENSAPLG00000002586 Anas platyrhynchos ENSAPLG00000002586 I
ENSAPLG00000014618 Anas platyrhynchos ENSAPLG00000014618 I
ENSACAG00000011719 Anolis carolinensis ENSACAG00000011719 I
ENSACAG00000012187 Anolis carolinensis ENSACAG00000012187 I
AALB009566 Anopheles albimanus AALB009566 I
AARA009846 Anopheles arabiensis AARA009846 I
AATE005421 Anopheles atroparvus AATE005421 I
ACUA002164 Anopheles culicifacies ACUA002164 I
ADIR003350 Anopheles dirus ADIR003350 I
AEPI007299 Anopheles epiroticus AEPI007299 I
AFAF001586 Anopheles farauti AFAF001586 I
AFUN011236 Anopheles funestus AFUN011236 I
AGAP003940 Anopheles gambiae AGAP003940 I
AMAM019487 Anopheles maculatus AMAM019487 I
AMIN000296 Anopheles minimus AMIN000296 I
AQUA009136 Anopheles quadriannulatus AQUA009136 I
ASIS014250 Anopheles sinensis ASIS014250 I
ASTEI00952 Anopheles stephensi ASTEI00952 I
GB41890 Apis mellifera GB41890 I
Afo_R000794 Aptenodytes forsteri Afo_R000794 I
Afo_R013485 Aptenodytes forsteri Afo_R013485 I
ENSAMXG00000006838 Astyanax mexicanus ENSAMXG00000006838 I
ENSAMXG00000017753 Astyanax mexicanus ENSAMXG00000017753 I
BGLB014390 Biomphalaria glabrata BGLB014390 I
BGIBMGA000445 Bombyx mori BGIBMGA000445 I
ENSBTAP00000014397-D1 Bos grunniens ENSBTAP00000014397-D1 I
ENSBTAP00000017410-D1 Bos grunniens ENSBTAP00000017410-D1 I
FOXN4 Bos taurus ENSBTAG00000010847 I
FOXN1 Bos taurus ENSBTAG00000013095 I
estExt_fgenesh2_pg.C_1860025 Branchiostoma floridae estExt_fgenesh2_pg.C_1860025 I
fgenesh2_pg.scaffold_129000050 Branchiostoma floridae fgenesh2_pg.scaffold_129000050 I
Brh_R000146 Buceros rhinoceros Brh_R000146 I
Brh_R003679 Buceros rhinoceros Brh_R003679 I
FOXN4 Callithrix jacchus ENSCJAG00000010010 I
FOXN1 Callithrix jacchus ENSCJAG00000012705 I
Aan_R003515 Calypte anna Aan_R003515 I
Aan_R010366 Calypte anna Aan_R010366 I
Cflo_09362--XP_394749.3_APIME Camponotus floridanus Cflo_09362--XP_394749.3_APIME I
FOXN4 Canis familiaris ENSCAFG00000010915 I
FOXN1 Canis familiaris ENSCAFG00000018709 I
FOXN4 Cavia porcellus ENSCPOG00000000942 I
FOXN1 Cavia porcellus ENSCPOG00000009810 I
Cmyd_10015695 Chelonia mydas Cmyd_10015695 I
Cmyd_10016296 Chelonia mydas Cmyd_10016296 I
ENSCSAG00000002781 Chlorocebus sabaeus ENSCSAG00000002781 I
ENSCSAG00000007275 Chlorocebus sabaeus ENSCSAG00000007275 I
CLEC011741 Cimex lectularius CLEC011741 I
CGI_10014633 Crassostrea gigas CGI_10014633 I
CpipJ_CPIJ001711 Culex pipiens CpipJ_CPIJ001711 I
CPIJ001711 Culex quinquefasciatus CPIJ001711 I
KGM_21935 Danaus plexippus KGM_21935 I
foxn4 Danio rerio ENSDARG00000010591 I
foxn1 Danio rerio ENSDARG00000011879 I
FOXN1 Dasypus novemcinctus ENSDNOG00000006144 I
FOXN4 Dasypus novemcinctus ENSDNOG00000015606 I
YQE_08440 Dendroctonus ponderosae YQE_08440 I
Foxn1 Dipodomys ordii ENSDORG00000015116 I
GF17528 Drosophila ananassae FBgn0094546 I
GG17529 Drosophila erecta FBgn0109754 I
GH19127 Drosophila grimshawi FBgn0126594 I
jumu Drosophila melanogaster FBgn0015396 D
GI23584 Drosophila mojavensis FBgn0146310 I
GA17887 Drosophila pseudoobscura FBgn0077896 I
GA25156 Drosophila pseudoobscura FBgn0246538 I
GM23879 Drosophila sechellia FBgn0178744 I
GD18690 Drosophila simulans FBgn0190211 I
GJ23559 Drosophila virilis FBgn0210656 I
GK11545 Drosophila willistoni FBgn0213556 I
GE26032 Drosophila yakuba FBgn0243075 I
FOXN1 Echinops telfairi ENSETEG00000015002 I
FOXN1 Equus caballus ENSECAG00000010691 I
FOXN1 Erinaceus europaeus ENSEEUG00000006629 I
FOXN4 Felis catus ENSFCAG00000003124 I
FOXN1 Felis catus ENSFCAG00000008268 I
ENSFALG00000006460 Ficedula albicollis ENSFALG00000006460 I
ENSFALG00000008767 Ficedula albicollis ENSFALG00000008767 I
ENSGMOG00000002294 Gadus morhua ENSGMOG00000002294 I
ENSGMOG00000012022 Gadus morhua ENSGMOG00000012022 I
ENSGALG00000003654 Gallus gallus ENSGALG00000003654 I
FoxN4 Gallus gallus ENSGALG00000005062 I
foxn1 Gasterosteus aculeatus ENSGACG00000008619 I
foxn4 Gasterosteus aculeatus ENSGACG00000009215 I
Gfo_R003176 Geospiza fortis Gfo_R003176 I
Gfo_R011440 Geospiza fortis Gfo_R011440 I
FOXN4 Gorilla gorilla ENSGGOG00000009323 I
FOXN1 Gorilla gorilla ENSGGOG00000009682 I
HHAL008872-PA Halyomorpha halys HHAL008872-PA I
FOXN1 Homo sapiens ENSG00000109101 D
FOXN4 Homo sapiens ENSG00000139445 I
XP_002166457.1 Hydra magnipapillata XP_002166457.1 I
ENSSTOG00000028800 Ictidomys tridecemlineatus ENSSTOG00000028800 I
ENSSTOG00000028981 Ictidomys tridecemlineatus ENSSTOG00000028981 I
ISCW008179 Ixodes scapularis ISCW008179 I
ENSLACG00000011453 Latimeria chalumnae ENSLACG00000011453 I
ENSLOCG00000000236 Lepisosteus oculatus ENSLOCG00000000236 I
ENSLOCG00000004428 Lepisosteus oculatus ENSLOCG00000004428 I
ENSLOCG00000005491 Lepisosteus oculatus ENSLOCG00000005491 I
LDEC004155 Leptinotarsa decemlineata LDEC004155 I
LotgiG77849 Lottia gigantea LotgiG77849 I
FOXN1 Loxodonta africana ENSLAFG00000014501 I
ENSLAFG00000031464 Loxodonta africana ENSLAFG00000031464 I
LCUP000947 Lucilia cuprina LCUP000947 I
LLOJ002533 Lutzomyia longipalpis LLOJ002533 I
ENSP00000226247 Macaca fascicularis ENSP00000226247 I
ENSP00000299162 Macaca fascicularis ENSP00000299162 I
ENSMMUG00000020375 Macaca mulatta ENSMMUG00000020375 I
FOXN1 Macaca mulatta ENSMMUG00000021975 I
ENSMEUG00000015975 Macropus eugenii ENSMEUG00000015975 I
FOXN1 Meleagris gallopavo ENSMGAG00000005734 I
FOXN4 Meleagris gallopavo ENSMGAG00000006116 I
FOXN1 Microcebus murinus ENSMICG00000016795 I
FOXN1 Monodelphis domestica ENSMODG00000019251 I
MDOA003678 Musca domestica MDOA003678 I
ENSMPUG00000003606 Mustela putorius furo ENSMPUG00000003606 I
ENSMPUG00000014265 Mustela putorius furo ENSMPUG00000014265 I
Foxn1 Mus musculus ENSMUSG00000002057 D
Foxn4 Mus musculus ENSMUSG00000042002 D
Myotis_brandtii_Foxn1_10015981 Myotis brandtii Myotis_brandtii_Foxn1_10015981 I
Myotis_brandtii_FOXN4_10027419 Myotis brandtii Myotis_brandtii_FOXN4_10027419 I
FOXN1 Myotis lucifugus ENSMLUG00000012353 I
NEMVEDRAFT_v1g121754 Nematostella vectensis NEMVEDRAFT_v1g121754 I
ENSNLEG00000001602 Nomascus leucogenys ENSNLEG00000001602 I
ENSNLEG00000002304 Nomascus leucogenys ENSNLEG00000002304 I
FOXN4 Ochotona princeps ENSOPRG00000006537 I
Ogr03484 Ophisaurus gracilis Ogr03484 I
Ogr14394 Ophisaurus gracilis Ogr14394 I
ENSONIG00000008179 Oreochromis niloticus ENSONIG00000008179 I
ENSONIG00000013504 Oreochromis niloticus ENSONIG00000013504 I
FOXN4 Ornithorhynchus anatinus ENSOANG00000008810 I
ENSOANG00000014185 Ornithorhynchus anatinus ENSOANG00000014185 I
FOXN4 Oryctolagus cuniculus ENSOCUG00000005185 I
FOXN1 Oryctolagus cuniculus ENSOCUG00000013779 I
FOXN4 Oryzias latipes ENSORLG00000007587 I
ENSORLG00000008113 Oryzias latipes ENSORLG00000008113 I
FOXN1 Otolemur garnettii ENSOGAG00000007093 I
FOXN4 Otolemur garnettii ENSOGAG00000007455 I
ENSOARG00000016041 Ovis aries ENSOARG00000016041 I
ENSOARG00000018638 Ovis aries ENSOARG00000018638 I
FOXN4 Pan troglodytes ENSPTRG00000005421 I
FOXN1 Pan troglodytes ENSPTRG00000008920 I
ENSPANG00000019523 Papio anubis ENSPANG00000019523 I
ENSPANG00000023451 Papio anubis ENSPANG00000023451 I
PHUM047550 Pediculus humanus PHUM047550 I
ENSPSIG00000004744 Pelodiscus sinensis ENSPSIG00000004744 I
ENSPSIG00000009226 Pelodiscus sinensis ENSPSIG00000009226 I
ENSPMAG00000004307 Petromyzon marinus ENSPMAG00000004307 I
PPAI007934 Phlebotomus papatasi PPAI007934 I
ENSPFOG00000006570 Poecilia formosa ENSPFOG00000006570 I
ENSPFOG00000013538 Poecilia formosa ENSPFOG00000013538 I
Pvit_00420 Pogona vitticeps Pvit_00420 I
Pvit_02436 Pogona vitticeps Pvit_02436 I
ENSPPYG00000004931 Pongo abelii ENSPPYG00000004931 I
ENSPPYG00000008096 Pongo abelii ENSPPYG00000008096 I
FOXN1 Procavia capensis ENSPCAG00000010796 I
FOXN1 Pteropus vampyrus ENSPVAG00000002892 I
FOXN4 Pteropus vampyrus ENSPVAG00000007463 I
Foxn4 Rattus norvegicus ENSRNOG00000000691 I
Foxn1 Rattus norvegicus ENSRNOG00000010870 I
RPRC003475 Rhodnius prolixus RPRC003475 I
Sakowv30034418m.g Saccoglossus kowalevskii Sakowv30034418m.g I
ENSSHAG00000013650 Sarcophilus harrisii ENSSHAG00000013650 I
SINV24088 Solenopsis invicta SINV24088 I
ENSSARG00000006773 Sorex araneus ENSSARG00000006773 I
SMAR013946 Strigamia maritima SMAR013946 I
ENSSSCG00000009936 Sus scrofa ENSSSCG00000009936 I
FOXN1 Sus scrofa ENSSSCG00000017762 I
ENSSSCG00000022921 Sus scrofa ENSSSCG00000022921 I
ENSSSCG00000029194 Sus scrofa ENSSSCG00000029194 I
FOXN1 Taeniopygia guttata ENSTGUG00000005999 I
FOXN4 Taeniopygia guttata ENSTGUG00000007235 I
foxn4 Takifugu rubripes ENSTRUG00000015456 I
foxn4 Tetraodon nigroviridis ENSTNIG00000015894 I
TC012532 Tribolium castaneum TC012532 I
FOXN4 Tupaia belangeri ENSTBEG00000005233 I
FOXN1 Tupaia belangeri ENSTBEG00000007940 I
FOXN1 Tursiops truncatus ENSTTRG00000004014 I
FOXN4 Tursiops truncatus ENSTTRG00000006397 I
Tal_R000657 Tyto alba Tal_R000657 I
Tal_R011069 Tyto alba Tal_R011069 I
foxn4.S Xenopus laevis XB-GENE-981090 I
foxn4 Xenopus tropicalis XB-GENE-981086 I
XP_002937190 Xenopus tropicalis XP_002937190 I
ENSXMAG00000007879 Xiphophorus maculatus ENSXMAG00000007879 I
ENSXMAG00000011786 Xiphophorus maculatus ENSXMAG00000011786 I
L798_10143 Zootermopsis nevadensis L798_10143 I