hoxa10b (Tetraodon nigroviridis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSTNIG00000001780 T216403_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Hoxa10
M00382_2.00 		Mus musculus
NHWAYNNNN
NNNNRTWDN		 PBM
Berger et al.(2008)
Hoxa10_2318 		0.867 1.000
HOXA10
M05394_2.00 		Homo sapiens
RRTCGTAAAAH
DTTTTACGAYY		 SELEX
Yin et al.(2017)
HOXA10_eDBD_HT-SELEX_1 		0.867 1.000
HOXA10
M05395_2.00 		Homo sapiens
NTTTTATKRCY
RGYMATAAAAN		 SELEX
Yin et al.(2017)
HOXA10_eDBD_HT-SELEX_2 		0.867 1.000
HOXA10
M05398_2.00 		Homo sapiens
NRTCRTWAANN
NNTTWAYGAYN		 SELEX
Yin et al.(2017)
HOXA10_FL_HT-SELEX_1 		0.867 1.000
HOXA10
M05399_2.00 		Homo sapiens
NNTTWATKRCN
NGYMATWAANN		 SELEX
Yin et al.(2017)
HOXA10_FL_HT-SELEX_2 		0.867 1.000
Hoxa10
M09170_2.00 		Mus musculus
DCATAAAYYRBH
DVYRRTTTATGH		 Misc
Kulakovskiy et al.(2013)
HXA10_MOUSE.H11MO.0.C 		0.867 1.000
Hoxa10
M10763_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HOXA10_Q5 		0.867 1.000
HOXA10
M05396_2.00 		Homo sapiens
NGTCGTAAAWN
NWTTTACGACN		 SELEX
Yin et al.(2017)
HOXA10_eDBD_Methyl-HT-SELEX_1 		0.867 1.000
HOXA10
M05397_2.00 		Homo sapiens
NTTTTATKRCB
VGYMATAAAAN		 SELEX
Yin et al.(2017)
HOXA10_eDBD_Methyl-HT-SELEX_2 		0.867 1.000
HOXA10
M05400_2.00 		Homo sapiens
NRTCGTWAANN
NNTTWACGAYN		 SELEX
Yin et al.(2017)
HOXA10_FL_Methyl-HT-SELEX_1 		0.867 1.000
HOXA10
M05401_2.00 		Homo sapiens
NNTTWATKRYN
NRYMATWAANN		 SELEX
Yin et al.(2017)
HOXA10_FL_Methyl-HT-SELEX_2 		0.867 1.000
Hoxd10
M00509_2.00 		Mus musculus
NNNNNNNN
NNNNNNNN		 PBM
Berger et al.(2008)
Hoxd10_2368 		0.865 0.965
HOXD10
M05112_2.00 		Homo sapiens
NKTTTATKRC
GYMATAAAMN		 SELEX
Yin et al.(2017)
HOXD10_eDBD_HT-SELEX_1 		0.865 0.965
HOXD10
M05113_2.00 		Homo sapiens
RTCGTAAAHN
NDTTTACGAY		 SELEX
Yin et al.(2017)
HOXD10_eDBD_HT-SELEX_2 		0.865 0.965
HOXD10
M05116_2.00 		Homo sapiens
RGTCGTAAAAH
DTTTTACGACY		 SELEX
Yin et al.(2017)
HOXD10_FL_HT-SELEX_1 		0.865 0.965
HOXD10
M05117_2.00 		Homo sapiens
RRYMATAAAAH
DTTTTATKRYY		 SELEX
Yin et al.(2017)
HOXD10_FL_HT-SELEX_2 		0.865 0.965
HOXD10
M10687_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HOXD10_Q2 		0.865 0.965
HOXD10
M10688_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HOXD10_Q6 		0.865 0.965
HOXD10
M05114_2.00 		Homo sapiens
NTTTTATKRC
GYMATAAAAN		 SELEX
Yin et al.(2017)
HOXD10_eDBD_Methyl-HT-SELEX_1 		0.865 0.965
HOXD10
M05115_2.00 		Homo sapiens
GTCGTAAAHN
NDTTTACGAC		 SELEX
Yin et al.(2017)
HOXD10_eDBD_Methyl-HT-SELEX_2 		0.865 0.965
HOXD10
M05118_2.00 		Homo sapiens
VGTCGTAAAAH
DTTTTACGACB		 SELEX
Yin et al.(2017)
HOXD10_FL_Methyl-HT-SELEX_1 		0.865 0.965
HOXD10
M05119_2.00 		Homo sapiens
DGYAATAAAAH
DTTTTATTRCH		 SELEX
Yin et al.(2017)
HOXD10_FL_Methyl-HT-SELEX_2 		0.865 0.965
Hoxc10
M00421_2.00 		Mus musculus
TTWATKAB
VTMATWAA		 PBM
Berger et al.(2008)
Hoxc10_2779 		0.847 0.930
HOXC10
M03228_2.00 		Homo sapiens
DTTTWATKDB
VHMATWAAAH		 SELEX
Jolma et al.(2013)
HOXC10_1 		0.847 0.930
HOXC10
M03229_2.00 		Homo sapiens
NNTTWATKRB
VYMATWAANN		 SELEX
Jolma et al.(2013)
HOXC10_2 		0.847 0.930
HOXC10
M03230_2.00 		Homo sapiens
NWTTWAYGAB
VTCRTWAAWN		 SELEX
Jolma et al.(2013)
HOXC10_3 		0.847 0.930
Hoxc10
M03252_2.00 		Mus musculus
DTTTWAYGAY
RTCRTWAAAH		 SELEX
Jolma et al.(2013)
Hoxc10_1 		0.847 0.930
Hoxc10
M03253_2.00 		Mus musculus
DTTTWATKRY
RYMATWAAAH		 SELEX
Jolma et al.(2013)
Hoxc10_2 		0.847 0.930
HOXC10
M05335_2.00 		Homo sapiens
NDTTTATKRCN
NGYMATAAAHN		 SELEX
Yin et al.(2017)
HOXC10_eDBD_HT-SELEX_1 		0.847 0.930
HOXC10
M05336_2.00 		Homo sapiens
NRTCGTAAAHN
NDTTTACGAYN		 SELEX
Yin et al.(2017)
HOXC10_eDBD_HT-SELEX_2 		0.847 0.930
HOXC10
M05339_2.00 		Homo sapiens
NTTTTATKRCN
NGYMATAAAAN		 SELEX
Yin et al.(2017)
HOXC10_FL_HT-SELEX_1 		0.847 0.930
HOXC10
M05340_2.00 		Homo sapiens
NRTCGTAAAWN
NWTTTACGAYN		 SELEX
Yin et al.(2017)
HOXC10_FL_HT-SELEX_2 		0.847 0.930
HOXC10
M05337_2.00 		Homo sapiens
NTTTTATKRCN
NGYMATAAAAN		 SELEX
Yin et al.(2017)
HOXC10_eDBD_Methyl-HT-SELEX_1 		0.847 0.930
HOXC10
M05338_2.00 		Homo sapiens
NRTCGTAAAHN
NDTTTACGAYN		 SELEX
Yin et al.(2017)
HOXC10_eDBD_Methyl-HT-SELEX_2 		0.847 0.930
HOXC10
M05341_2.00 		Homo sapiens
DTTTTATKRCH
DGYMATAAAAH		 SELEX
Yin et al.(2017)
HOXC10_FL_Methyl-HT-SELEX_1 		0.847 0.930
HOXC10
M05342_2.00 		Homo sapiens
VGTCGTAAAHN
NDTTTACGACB		 SELEX
Yin et al.(2017)
HOXC10_FL_Methyl-HT-SELEX_2 		0.847 0.930
Hoxa9
M00475_2.00 		Mus musculus
NNDDBNNN
NNNVHHNN		 PBM
Berger et al.(2008)
Hoxa9_2622 		0.804 0.842
HOXA9
M03085_2.00 		Homo sapiens
NNDTTWAYGAYN
NRTCRTWAAHNN		 SELEX
Jolma et al.(2013)
HOXA10_1 		0.804 0.842
HOXA9
M03086_2.00 		Homo sapiens
NDTTWATKRYN
NRYMATWAAHN		 SELEX
Jolma et al.(2013)
HOXA10_2 		0.804 0.842
HOXA9
M04932_2.00 		Homo sapiens
NNDWWABKRC
GYMVTWWHNN		 SELEX
Yin et al.(2017)
HOXA9_FL_HT-SELEX_1 		0.804 0.842
HOXA9
M04933_2.00 		Homo sapiens
NNDTWAYGRB
VYCRTWAHNN		 SELEX
Yin et al.(2017)
HOXA9_FL_HT-SELEX_2 		0.804 0.842
Hoxa9
M08138_2.00 		Mus musculus
TGATTKATKRB
VYMATMAATCA		 ChIP-seq
Mathelier et al.(2014)
MA0594.1 		0.804 0.842
HOXA9
M09130_2.00 		Homo sapiens
DCATAAAYYRBH
DVYRRTTTATGH		 Misc
Kulakovskiy et al.(2013)
HXA10_HUMAN.H11MO.0.C 		0.804 0.842
HOXA9
M09131_2.00 		Homo sapiens
HHATAAATCAH
DTGATTTATDD		 Misc
Kulakovskiy et al.(2013)
HXA9_HUMAN.H11MO.0.B 		0.804 0.842
Hoxa9
M09203_2.00 		Mus musculus
HHATAAATCAH
DTGATTTATDD		 Misc
Kulakovskiy et al.(2013)
HXA9_MOUSE.H11MO.0.B 		0.804 0.842
Hoxa9
M09575_2.00 		Mus musculus
WGATTKATDRBY
RVYHATMAATCW		 Misc
Heinz et al.(2010)
HSC-Hoxa9_GSE33509 		0.804 0.842
HOXA9
M10642_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HOXA10_Q6 		0.804 0.842
HOXA9
M10643_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HOXA9_04 		0.804 0.842
HOXA9
M10644_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HOXA9_Q5_01 		0.804 0.842
HOXA9
M10645_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HOXA9_Q5 		0.804 0.842
HOXA9
M04934_2.00 		Homo sapiens
NNDTWAYKRC
GYMRTWAHNN		 SELEX
Yin et al.(2017)
HOXA9_FL_Methyl-HT-SELEX_1 		0.804 0.842
HOXA9
M04935_2.00 		Homo sapiens
NNDTWACGAY
RTCGTWAHNN		 SELEX
Yin et al.(2017)
HOXA9_FL_Methyl-HT-SELEX_2 		0.804 0.842
Hoxd9
M03282_2.00 		Mus musculus
TTTWATKKB
VMMATWAAA		 SELEX
Jolma et al.(2013)
Hoxd9_1 		0.804 0.825
Hoxd9
M03283_2.00 		Mus musculus
DWTTWATKRY
RYMATWAAWH		 SELEX
Jolma et al.(2013)
Hoxd9_2 		0.804 0.825
Hoxd9
M03284_2.00 		Mus musculus
DTTWAYGRB
VYCRTWAAH		 SELEX
Jolma et al.(2013)
Hoxd9_3 		0.804 0.825
HOXC9
M05331_2.00 		Homo sapiens
GTCGTAAAAN
NTTTTACGAC		 SELEX
Yin et al.(2017)
HOXC9_FL_HT-SELEX_1 		0.804 0.825
HOXC9
M05332_2.00 		Homo sapiens
NTTTTATKRC
GYMATAAAAN		 SELEX
Yin et al.(2017)
HOXC9_FL_HT-SELEX_2 		0.804 0.825
HOXD9
M05104_2.00 		Homo sapiens
NTTTTATKRC
GYMATAAAAN		 SELEX
Yin et al.(2017)
HOXD9_eDBD_HT-SELEX_1 		0.804 0.825
HOXD9
M05105_2.00 		Homo sapiens
RTCRTAAAWN
NWTTTAYGAY		 SELEX
Yin et al.(2017)
HOXD9_eDBD_HT-SELEX_2 		0.804 0.825
HOXD9
M05108_2.00 		Homo sapiens
RTCGTAAAWN
NWTTTACGAY		 SELEX
Yin et al.(2017)
HOXD9_FL_HT-SELEX_1 		0.804 0.825
HOXD9
M05109_2.00 		Homo sapiens
NTTTTATKRC
GYMATAAAAN		 SELEX
Yin et al.(2017)
HOXD9_FL_HT-SELEX_2 		0.804 0.825
HOXC9
M09161_2.00 		Homo sapiens
HTTWATKGCH
DGCMATWAAD		 Misc
Kulakovskiy et al.(2013)
HXC9_HUMAN.H11MO.0.C 		0.804 0.825
HOXD9
M10686_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HOXD9_Q2 		0.804 0.825
HOXC9
M05333_2.00 		Homo sapiens
RTCGTAAAHN
NDTTTACGAY		 SELEX
Yin et al.(2017)
HOXC9_FL_Methyl-HT-SELEX_1 		0.804 0.825
HOXC9
M05334_2.00 		Homo sapiens
NTTTWATKRC
GYMATWAAAN		 SELEX
Yin et al.(2017)
HOXC9_FL_Methyl-HT-SELEX_2 		0.804 0.825
HOXD9
M05106_2.00 		Homo sapiens
NNTTWATKRC
GYMATWAANN		 SELEX
Yin et al.(2017)
HOXD9_eDBD_Methyl-HT-SELEX_1 		0.804 0.825
HOXD9
M05107_2.00 		Homo sapiens
RTCGTAAANN
NNTTTACGAY		 SELEX
Yin et al.(2017)
HOXD9_eDBD_Methyl-HT-SELEX_2 		0.804 0.825
HOXD9
M05110_2.00 		Homo sapiens
RTCGTAAANN
NNTTTACGAY		 SELEX
Yin et al.(2017)
HOXD9_FL_Methyl-HT-SELEX_1 		0.804 0.825
HOXD9
M05111_2.00 		Homo sapiens
NDTTWATKRC
GYMATWAAHN		 SELEX
Yin et al.(2017)
HOXD9_FL_Methyl-HT-SELEX_2 		0.804 0.825
Hoxb9
M00410_2.00 		Mus musculus
NTTWAYDDNN
NNHHRTWAAN		 PBM
Berger et al.(2008)
Hoxb9_3413 		0.804 0.807
HOXB9
M05289_2.00 		Homo sapiens
RTCRTAAAWN
NWTTTAYGAY		 SELEX
Yin et al.(2017)
HOXB9_eDBD_HT-SELEX_1 		0.804 0.807
HOXB9
M05290_2.00 		Homo sapiens
NTTTWATKRC
GYMATWAAAN		 SELEX
Yin et al.(2017)
HOXB9_eDBD_HT-SELEX_2 		0.804 0.807
HOXB9
M05291_2.00 		Homo sapiens
GTCGTAAAHB
VDTTTACGAC		 SELEX
Yin et al.(2017)
HOXB9_eDBD_Methyl-HT-SELEX 		0.804 0.807
Hoxc9
M00470_2.00 		Mus musculus
NGTAATWAAN
NTTWATTACN		 PBM
Berger et al.(2008)
Hoxc9_2367 		0.796 0.807
Hoxc9
M08137_2.00 		Mus musculus
NWGATTTATDGSH
DSCHATAAATCWN		 ChIP-seq
Mathelier et al.(2014)
MA0485.1 		0.796 0.807
Hoxc9
M09574_2.00 		Mus musculus
TGATTTATDGCH
DGCHATAAATCA		 Misc
Heinz et al.(2010)
Ainv15-Hoxc9_GSE21812 		0.796 0.807
Hoxd11
M00493_2.00 		Mus musculus
DDDNNNNN
NNNNNHHH		 PBM
Berger et al.(2008)
Hoxd11_3873 		0.764 0.719
HOXD11
M03139_2.00 		Homo sapiens
RTCGTAAAWH
DWTTTACGAY		 SELEX
Jolma et al.(2013)
HOXD11_1 		0.764 0.719
HOXD11
M03140_2.00 		Homo sapiens
TTTWATKRBH
DVYMATWAAA		 SELEX
Jolma et al.(2013)
HOXD11_2 		0.764 0.719
HOXD11
M05120_2.00 		Homo sapiens
NRTCGTWAANNDTWAH
DTWAHNNTTWACGAYN		 SELEX
Yin et al.(2017)
HOXD11_eDBD_HT-SELEX 		0.764 0.719
HOXD11
M05121_2.00 		Homo sapiens
NRTCGTWAAHNDTWAH
DTWAHNDTTWACGAYN		 SELEX
Yin et al.(2017)
HOXD11_eDBD_Methyl-HT-SELEX 		0.764 0.719
Hoxc11
M00390_2.00 		Mus musculus
NTTWAYDDBN
NVHHRTWAAN		 PBM
Berger et al.(2008)
Hoxc11_3718 		0.764 0.702
Hoxa11
M00474_2.00 		Mus musculus
NNHNHNNNN
NNNNDNDNN		 PBM
Berger et al.(2008)
Hoxa11_2218 		0.764 0.702
HOXC11
M03131_2.00 		Homo sapiens
NWTTWAYGAYH
DRTCRTWAAWN		 SELEX
Jolma et al.(2013)
HOXC11_1 		0.764 0.702
HOXC11
M03132_2.00 		Homo sapiens
NWTTWATKRBH
DVYMATWAAWN		 SELEX
Jolma et al.(2013)
HOXC11_2 		0.764 0.702
HOXC11
M03133_2.00 		Homo sapiens
DRTCGTWAAWN
NWTTWACGAYH		 SELEX
Jolma et al.(2013)
HOXC11_3 		0.764 0.702
HOXC11
M03134_2.00 		Homo sapiens
NTTTTATKRBN
NVYMATAAAAN		 SELEX
Jolma et al.(2013)
HOXC11_4 		0.764 0.702
Hoxa11
M03274_2.00 		Mus musculus
NNDTTWAYGABN
NVTCRTWAAHNN		 SELEX
Jolma et al.(2013)
Hoxa11_1 		0.764 0.702
Hoxa11
M03275_2.00 		Mus musculus
NDTTWATKRNN
NNYMATWAAHN		 SELEX
Jolma et al.(2013)
Hoxa11_2 		0.764 0.702
HOXA11
M04897_2.00 		Homo sapiens
VGTCGTAAAWH
DWTTTACGACB		 SELEX
Yin et al.(2017)
HOXA11_eDBD_HT-SELEX_1 		0.764 0.702
HOXA11
M04898_2.00 		Homo sapiens
DDTTWATKRSN
NSYMATWAAHH		 SELEX
Yin et al.(2017)
HOXA11_eDBD_HT-SELEX_2 		0.764 0.702
HOXC11
M05075_2.00 		Homo sapiens
NDTTWACGAYN
NRTCGTWAAHN		 SELEX
Yin et al.(2017)
HOXC11_eDBD_HT-SELEX_1 		0.764 0.702
HOXC11
M05076_2.00 		Homo sapiens
NWTTWATKRCH
DGYMATWAAWN		 SELEX
Yin et al.(2017)
HOXC11_eDBD_HT-SELEX_2 		0.764 0.702
HOXC11
M05079_2.00 		Homo sapiens
NRTCGTWAAHN
NDTTWACGAYN		 SELEX
Yin et al.(2017)
HOXC11_FL_HT-SELEX_1 		0.764 0.702
HOXC11
M05080_2.00 		Homo sapiens
NDTTWATKRSN
NSYMATWAAHN		 SELEX
Yin et al.(2017)
HOXC11_FL_HT-SELEX_2 		0.764 0.702
HOXA11
M04899_2.00 		Homo sapiens
NRTCGTAAAWH
DWTTTACGAYN		 SELEX
Yin et al.(2017)
HOXA11_eDBD_Methyl-HT-SELEX_1 		0.764 0.702
HOXA11
M04900_2.00 		Homo sapiens
DYTTTATKRCH
DGYMATAAARH		 SELEX
Yin et al.(2017)
HOXA11_eDBD_Methyl-HT-SELEX_2 		0.764 0.702
HOXC11
M05077_2.00 		Homo sapiens
NRTCGTAAAHN
NDTTTACGAYN		 SELEX
Yin et al.(2017)
HOXC11_eDBD_Methyl-HT-SELEX_1 		0.764 0.702
HOXC11
M05078_2.00 		Homo sapiens
NDTTTATKRSN
NSYMATAAAHN		 SELEX
Yin et al.(2017)
HOXC11_eDBD_Methyl-HT-SELEX_2 		0.764 0.702
HOXC11
M05081_2.00 		Homo sapiens
NRTCGTWAANN
NNTTWACGAYN		 SELEX
Yin et al.(2017)
HOXC11_FL_Methyl-HT-SELEX_1 		0.764 0.702
HOXC11
M05082_2.00 		Homo sapiens
NNTTWAYKRSN
NSYMRTWAANN		 SELEX
Yin et al.(2017)
HOXC11_FL_Methyl-HT-SELEX_2 		0.764 0.702
Abd-B
M00554_2.00 		Drosophila melanogaster
NWTWAYDDNN
NNHHRTWAWN		 PBM
Busser et al.(2012a)
Abd-B 		0.651 0.702
Abd-B
M03772_2.00 		Drosophila melanogaster
DRTCRTAAAWH
DWTTTAYGAYH		 SELEX
Nitta et al.(2015)
Abd-B_1 		0.651 0.702
Abd-B
M03773_2.00 		Drosophila melanogaster
DTTTTATKRCY
RGYMATAAAAH		 SELEX
Nitta et al.(2015)
Abd-B_2 		0.651 0.702
Abd-B
M03774_2.00 		Drosophila melanogaster
NKCARYAACGACYW
WRGTCGTTRYTGMN		 SELEX
Nitta et al.(2015)
Abd-B_3 		0.651 0.702
Abd-B
M03775_2.00 		Drosophila melanogaster
DTTTWATGKSTTTY
RAAASMCATWAAAH		 SELEX
Nitta et al.(2015)
Abd-B_4 		0.651 0.702
Abd-B
M06476_2.00 		Drosophila melanogaster
TTTATKR
YMATAAA		 B1H
Mathelier et al.(2014)
MA0165.1 		0.651 0.702
Abd-B
M06211_2.00 		Drosophila melanogaster
YCATAAAA
TTTTATGR		 B1H
Zhu et al.(2011)
Abd-B_FlyReg_FBgn0000015 		0.651 0.702
Abd-B
M09672_2.00 		Drosophila melanogaster
YMATAAAAHH
DDTTTTATKR		 Misc
Kulakovskiy et al.(2009)
Abd-B 		0.651 0.702
Abd-B
M10779_2.00 		Drosophila melanogaster
VSNTTDATKRCNNN
NNNGYMATHAANSB		 Transfac
Matys et al.(2006)
I$ABDB_01 		0.651 0.702
Abd-B
M10780_2.00 		Drosophila melanogaster Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
I$ABDB_Q6 		0.651 0.702
abd-A
M03770_2.00 		Drosophila melanogaster
NNTAATKRCN
NGYMATTANN		 SELEX
Nitta et al.(2015)
abd-A_1 		0.623 0.702
abd-A
M03771_2.00 		Drosophila melanogaster
NNTAATKRCN
NGYMATTANN		 SELEX
Nitta et al.(2015)
abd-A_2 		0.623 0.702
abd-A
M06475_2.00 		Drosophila melanogaster
TTAATKA
TMATTAA		 B1H
Mathelier et al.(2014)
MA0206.1 		0.623 0.702
abd-A
M06210_2.00 		Drosophila melanogaster
WTWATKDM
KHMATWAW		 B1H
Zhu et al.(2011)
Abd-A_FlyReg_FBgn0000014 		0.623 0.702
abd-A
M09671_2.00 		Drosophila melanogaster
HTAATKRH
DYMATTAD		 Misc
Kulakovskiy et al.(2009)
abd-A 		0.623 0.702
abd-A
M10778_2.00 		Drosophila melanogaster Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
I$ABDA_Q6 		0.623 0.702
Ubx
M00558_2.00 		Drosophila melanogaster
NWWAYDDNN
NNHHRTWWN		 PBM
Busser et al.(2012a)
Ubx 		0.614 0.667
Ubx
M03804_2.00 		Drosophila melanogaster
NTAATKRH
DYMATTAN		 SELEX
Nitta et al.(2015)
Ubx_1 		0.614 0.667
Ubx
M06499_2.00 		Drosophila melanogaster
NTTAATKR
YMATTAAN		 B1H
Mathelier et al.(2014)
MA0094.2 		0.614 0.667
Ubx
M06273_2.00 		Drosophila melanogaster
NTTAATKR
YMATTAAN		 B1H
Zhu et al.(2011)
Ubx_Cell_FBgn0003944 		0.614 0.667
Ubx
M06274_2.00 		Drosophila melanogaster
TAATKD
HMATTA		 B1H
Zhu et al.(2011)
Ubx_FlyReg_FBgn0003944 		0.614 0.667
Ubx
M06275_2.00 		Drosophila melanogaster
NTTWATKR
YMATWAAN		 B1H
Zhu et al.(2011)
Ubx_SOLEXA_FBgn0003944 		0.614 0.667
Ubx
M09680_2.00 		Drosophila melanogaster
TTAATKR
YMATTAA		 Misc
Kulakovskiy et al.(2009)
Ubx 		0.614 0.667
Ubx
M10788_2.00 		Drosophila melanogaster
NNVNNNNTAATKRNBHNND
HNNDVNYMATTANNNNBNN		 Transfac
Matys et al.(2006)
I$UBX_01 		0.614 0.667
CBG00023
M02062_2.00 		Caenorhabditis briggsae
NWWATKDNNN
NNNHMATWWN		 PBM
Weirauch et al.(2014)
pTH5778 		0.608 0.491
egl-5
M09581_2.00 		Caenorhabditis elegans
DWTTWATGGS
SCCATWAAWH		 Misc
Heinz et al.(2010)
cElegans-L3-EGL5_modEncode 		0.608 0.491
Hoxa6
M00494_2.00 		Mus musculus
NWWATKRNN
NNYMATWWN		 PBM
Berger et al.(2008)
Hoxa6_1040 		0.607 0.684
HOXA6
M04974_2.00 		Homo sapiens
NNTAATKRVN
NBYMATTANN		 SELEX
Yin et al.(2017)
HOXA6_eDBD_HT-SELEX 		0.607 0.684
HOXA6
M04975_2.00 		Homo sapiens
NNTAATKRBN
NVYMATTANN		 SELEX
Yin et al.(2017)
HOXA6_eDBD_Methyl-HT-SELEX_1 		0.607 0.684
HOXA6
M04976_2.00 		Homo sapiens
NTAAYGRY
RYCRTTAN		 SELEX
Yin et al.(2017)
HOXA6_eDBD_Methyl-HT-SELEX_2 		0.607 0.684
Hoxc6
M00392_2.00 		Mus musculus
TTAATTAB
VTAATTAA		 PBM
Berger et al.(2008)
Hoxc6_3954 		0.607 0.667
Q8I9J5_9BILA
M02214_2.00 		Spadella cephaloptera
NVTAWTWABN
NVTWAWTABN		 PBM
Weirauch et al.(2014)
pTH6164 		0.605 0.579
Hoxc8
M00391_2.00 		Mus musculus
NNDNYNNNN
NNNNRNHNN		 PBM
Berger et al.(2008)
Hoxc8_3429 		0.605 0.702
Hoxd8
M00436_2.00 		Mus musculus
NNWWYNNN
NNNRWWNN		 PBM
Berger et al.(2008)
Hoxd8_2644 		0.605 0.702
Hoxb8
M00517_2.00 		Mus musculus
NWWAYNDNN
NNHNRTWWN		 PBM
Berger et al.(2008)
Hoxb8_3780 		0.605 0.702
HOXD8
M03221_2.00 		Homo sapiens
VHWAATKWDN
NHWMATTWDB		 SELEX
Jolma et al.(2013)
HOXD8_1 		0.605 0.702
HOXB8
M05048_2.00 		Homo sapiens
NTAATKRM
KYMATTAN		 SELEX
Yin et al.(2017)
HOXB8_eDBD_HT-SELEX 		0.605 0.702
HOXC8
M04912_2.00 		Homo sapiens
NYAATTRN
NYAATTRN		 SELEX
Yin et al.(2017)
HOXC8_FL_HT-SELEX 		0.605 0.702
HOXD8
M05310_2.00 		Homo sapiens
BTAATKRY
RYMATTAV		 SELEX
Yin et al.(2017)
HOXD8_eDBD_HT-SELEX 		0.605 0.702
HOXB8
M09141_2.00 		Homo sapiens
BMATHAATCAA
TTGATTDATKV		 Misc
Kulakovskiy et al.(2013)
HXB8_HUMAN.H11MO.0.C 		0.605 0.702
Hoxb8
M09214_2.00 		Mus musculus
BMATHAATCAA
TTGATTDATKV		 Misc
Kulakovskiy et al.(2013)
HXB8_MOUSE.H11MO.0.C 		0.605 0.702
HOXC8
M10636_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HOXC8_Q3 		0.605 0.702
HOXB8
M05049_2.00 		Homo sapiens
NTAATKRN
NYMATTAN		 SELEX
Yin et al.(2017)
HOXB8_eDBD_Methyl-HT-SELEX_1 		0.605 0.702
HOXB8
M05050_2.00 		Homo sapiens
NTAAYGAY
RTCRTTAN		 SELEX
Yin et al.(2017)
HOXB8_eDBD_Methyl-HT-SELEX_2 		0.605 0.702
HOXC8
M04913_2.00 		Homo sapiens
NYMATKRN
NYMATKRN		 SELEX
Yin et al.(2017)
HOXC8_FL_Methyl-HT-SELEX_1 		0.605 0.702
HOXC8
M04914_2.00 		Homo sapiens
NTWAYGRY
RYCRTWAN		 SELEX
Yin et al.(2017)
HOXC8_FL_Methyl-HT-SELEX_2 		0.605 0.702
HOXD8
M05311_2.00 		Homo sapiens
NTAATKRN
NYMATTAN		 SELEX
Yin et al.(2017)
HOXD8_eDBD_Methyl-HT-SELEX_1 		0.605 0.702
HOXD8
M05312_2.00 		Homo sapiens
NTWAYGRY
RYCRTWAN		 SELEX
Yin et al.(2017)
HOXD8_eDBD_Methyl-HT-SELEX_2 		0.605 0.702
Hoxc12
M00508_2.00 		Mus musculus
NDTWAYNDBN
NVHNRTWAHN		 PBM
Berger et al.(2008)
Hoxc12_3480 		0.603 0.632
HOXC12
M03135_2.00 		Homo sapiens
TTTTATTRY
RYAATAAAA		 SELEX
Jolma et al.(2013)
HOXC12_1 		0.603 0.632
HOXC12
M03136_2.00 		Homo sapiens
RRTCGTAAAAH
DTTTTACGAYY		 SELEX
Jolma et al.(2013)
HOXC12_2 		0.603 0.632
HOXC12
M05083_2.00 		Homo sapiens
NGYAATAAAAN
NTTTTATTRCN		 SELEX
Yin et al.(2017)
HOXC12_eDBD_HT-SELEX_1 		0.603 0.632
HOXC12
M05084_2.00 		Homo sapiens
VRTCGTAAAHN
NDTTTACGAYB		 SELEX
Yin et al.(2017)
HOXC12_eDBD_HT-SELEX_2 		0.603 0.632
HOXC12
M05085_2.00 		Homo sapiens
NGYAATAAAAH
DTTTTATTRCN		 SELEX
Yin et al.(2017)
HOXC12_eDBD_Methyl-HT-SELEX_1 		0.603 0.632
HOXC12
M05086_2.00 		Homo sapiens
NRTCGTAAAHH
DDTTTACGAYN		 SELEX
Yin et al.(2017)
HOXC12_eDBD_Methyl-HT-SELEX_2 		0.603 0.632
Hoxd12_CONSTRUCT
M00538_2.00 		PBM CONSTRUCTS
NWTWAYNDBN
NVHNRTWAWN		 PBM
Berger et al.(2008)
Hoxd12_3481 		0.603 0.614
HOXD12
M03206_2.00 		Homo sapiens
SYAATAAAA
TTTTATTRS		 SELEX
Jolma et al.(2013)
HOXD12_1 		0.603 0.614
HOXD12
M03207_2.00 		Homo sapiens
RVTCGTAAAAH
DTTTTACGABY		 SELEX
Jolma et al.(2013)
HOXD12_2 		0.603 0.614
HOXD12
M03208_2.00 		Homo sapiens
NRTCGTAAAHN
NDTTTACGAYN		 SELEX
Jolma et al.(2013)
HOXD12_3 		0.603 0.614
HOXD12
M03209_2.00 		Homo sapiens
DTTWATYRC
GYRATWAAH		 SELEX
Jolma et al.(2013)
HOXD12_4 		0.603 0.614
HOXD12
M05279_2.00 		Homo sapiens
NKTWACGAYN
NRTCGTWAMN		 SELEX
Yin et al.(2017)
HOXD12_eDBD_HT-SELEX 		0.603 0.614
HOXD12
M05280_2.00 		Homo sapiens
NRTCGTAAAH
DTTTACGAYN		 SELEX
Yin et al.(2017)
HOXD12_eDBD_Methyl-HT-SELEX 		0.603 0.614
Hoxb6
M00381_2.00 		Mus musculus
NNDHNNN
NNNDHNN		 PBM
Berger et al.(2008)
Hoxb6_3428 		0.603 0.667
HOXB6
M04999_2.00 		Homo sapiens
NTAATKRY
RYMATTAN		 SELEX
Yin et al.(2017)
HOXB6_eDBD_HT-SELEX 		0.603 0.667
HOXB6
M05000_2.00 		Homo sapiens
HTAAYGAY
RTCRTTAD		 SELEX
Yin et al.(2017)
HOXB6_eDBD_Methyl-HT-SELEX_1 		0.603 0.667
HOXB6
M05001_2.00 		Homo sapiens
NTWATKRB
VYMATWAN		 SELEX
Yin et al.(2017)
HOXB6_eDBD_Methyl-HT-SELEX_2 		0.603 0.667
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000004144 Homeodomain 254 310
ENSTNIP00000021597 Homeodomain 249 305

Links

Other Homeodomain family TFs
Other Tetraodon nigroviridis TFs

1392 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_32153 Aegilops tauschii F775_32153 I
AMTR_s00176p00045260 Amborella trichopoda AMTR_s00176p00045260 I
Aquca_091_00086 Aquilegia coerulea Aquca_091_00086 I
Aquca_003_00615 Aquilegia coerulea Aquca_003_00615 I
BRADI1G69480 Brachypodium distachyon BRADI1G69480 I
PK26059.1 Cannabis sativa PK26059.1 I
Cagra.2235s0034 Capsella grandiflora Cagra.2235s0034 I
Carubv10018465m.g Capsella rubella Carubv10018465m.g I
evm.TU.supercontig_9.105 Carica papaya evm.TU.supercontig_9.105 I
evm.TU.supercontig_2.186 Carica papaya evm.TU.supercontig_2.186 I
Ca_02989 Cicer arietinum Ca_02989 I
Cla022101 Citrullus lanatus Cla022101 I
Cla009424 Citrullus lanatus Cla009424 I
Ciclev10004470m.g Citrus clementina Ciclev10004470m.g I
Ciclev10004989m.g Citrus clementina Ciclev10004989m.g I
Ciclev10014527m.g Citrus clementina Ciclev10014527m.g I
orange1.1g005938m.g Citrus sinensis orange1.1g005938m.g I
e_gw1.1.548.1 Coccomyxa subellipsoidea C169 e_gw1.1.548.1 I
Cucsa.069440 Cucumis sativus Cucsa.069440 I
Cucsa.252760 Cucumis sativus Cucsa.252760 I
Eucgr.A00189 Eucalyptus grandis Eucgr.A00189 I
Eucgr.G02094 Eucalyptus grandis Eucgr.G02094 I
gene05178-v1.0-hybrid Fragaria vesca gene05178-v1.0-hybrid I
GLYMA17G03380 Glycine max GLYMA17G03380 I
GLYMA15G15520 Glycine max GLYMA15G15520 I
GLYMA09G04470 Glycine max GLYMA09G04470 I
GLYMA07G37220 Glycine max GLYMA07G37220 I
Gorai.002G029200 Gossypium raimondii Gorai.002G029200 I
Gorai.011G196400 Gossypium raimondii Gorai.011G196400 I
Gorai.010G243900 Gossypium raimondii Gorai.010G243900 I
Gorai.006G259700 Gossypium raimondii Gorai.006G259700 I
Gorai.005G156900 Gossypium raimondii Gorai.005G156900 I
LPERR03G08040 Leersia perrieri LPERR03G08040 I
MDP0000290818 Malus domestica MDP0000290818 I
MDP0000224740 Malus domestica MDP0000224740 I
cassava43032.valid.m1 Manihot esculenta cassava43032.valid.m1 I
cassava40494.m1 Manihot esculenta cassava40494.m1 I
MTR_4g121020 Medicago truncatula MTR_4g121020 I
mgf010113m Mimulus guttatus mgf010113m I
mgf012203m Mimulus guttatus mgf012203m I
GSMUA_Achr1G22230_001 Musa acuminata GSMUA_Achr1G22230_001 I
OBART03G08950 Oryza barthii OBART03G08950 I
OB03G19140 Oryza brachyantha OB03G19140 I
ORGLA03G0086800 Oryza glaberrima ORGLA03G0086800 I
OGLUM03G09080 Oryza glumaepatula OGLUM03G09080 I
RR23 Oryza indica BGIOSGA005436 I
RR21 Oryza indica BGIOSGA012149 I
OLONG_002370 Oryza longistaminata OLONG_002370 I
OMERI03G08390 Oryza meridionalis OMERI03G08390 I
ONIVA06G01160 Oryza nivara ONIVA06G01160 I
OPUNC03G08640 Oryza punctata OPUNC03G08640 I
ORUFI03G09090 Oryza rufipogon ORUFI03G09090 I
RR21 Oryza sativa OS03G0224200 I
Pavir.Ib00921 Panicum virgatum Pavir.Ib00921 I
Pavir.Ia04946 Panicum virgatum Pavir.Ia04946 I
PDK_20s13009423g003 Phoenix dactylifera PDK_20s13009423g003 I
PDK_20s1451831g001 Phoenix dactylifera PDK_20s1451831g001 I
e_gw1.10.288.1 Physcomitrella patens e_gw1.10.288.1 I
e_gw1.362.4.1 Physcomitrella patens e_gw1.362.4.1 D
POPTR_0008s13490 Populus trichocarpa POPTR_0008s13490 I
POPTR_0008s22990 Populus trichocarpa POPTR_0008s22990 I
POPTR_0010s00320 Populus trichocarpa POPTR_0010s00320 I
POPTR_0010s11600 Populus trichocarpa POPTR_0010s11600 I
PRUPE_ppa002408mg Prunus persica PRUPE_ppa002408mg I
27647.m000179 Ricinus communis 27647.m000179 I
29889.m003245 Ricinus communis 29889.m003245 I
SapurV1A.0739s0030 Salix purpurea SapurV1A.0739s0030 I
SapurV1A.0055s0320 Salix purpurea SapurV1A.0055s0320 I
SapurV1A.0015s0530 Salix purpurea SapurV1A.0015s0530 I
SELMODRAFT_450181 Selaginella moellendorffii SELMODRAFT_450181 I
SELMODRAFT_173793 Selaginella moellendorffii SELMODRAFT_173793 I
SELMODRAFT_187683 Selaginella moellendorffii SELMODRAFT_187683 I
SELMODRAFT_418787 Selaginella moellendorffii SELMODRAFT_418787 I
Si034517m.g Setaria italica Si034517m.g I
Solyc01g065540.2 Solanum lycopersicum Solyc01g065540.2 I
Solyc04g008050.2 Solanum lycopersicum Solyc04g008050.2 I
Solyc05g054390.2 Solanum lycopersicum Solyc05g054390.2 I
PGSC0003DMG400023534 Solanum tuberosum PGSC0003DMG400023534 I
PGSC0003DMG400029514 Solanum tuberosum PGSC0003DMG400029514 I
PGSC0003DMG401025624 Solanum tuberosum PGSC0003DMG401025624 I
Sb01g042400 Sorghum bicolor Sb01g042400 I
TCM_011067 Theobroma cacao TCM_011067 I
TCM_021300 Theobroma cacao TCM_021300 I
Traes_4DL_2527CA8BF Triticum aestivum Traes_4DL_2527CA8BF I
Traes_4BL_941E7DE4D Triticum aestivum Traes_4BL_941E7DE4D I
Traes_4AS_6486B493A Triticum aestivum Traes_4AS_6486B493A I
TRIUR3_25342 Triticum urartu TRIUR3_25342 I
ARR14 Vitis vinifera VIT_01s0011g05830 I
VIT_05s0077g01480 Vitis vinifera VIT_05s0077g01480 I
e_gw1.83.144.1 Volvox carteri e_gw1.83.144.1 I
GRMZM2G126834 Zea mays GRMZM2G126834 I
GRMZM2G099797 Zea mays GRMZM2G099797 I