ATHB18 (Arabidopsis lyrata)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 fgenesh2_kg.2__1356__AT1G70920.1 T218455_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-X
M06902_2.00 		Arabidopsis thaliana
HHAATRATTRN
NYAATYATTDD		 Dap-seq
OMalley et al.(2016)
ATHB18_col_a 		0.867 1.000
ATHB-X
M06903_2.00 		Arabidopsis thaliana
NYAATGATTRV
BYAATCATTRN		 Dap-seq
OMalley et al.(2016)
ATHB18_colamp_a 		0.867 1.000
HAT22
M06926_2.00 		Arabidopsis thaliana
NNYAATCATT
AATGATTRNN		 Dap-seq
OMalley et al.(2016)
HAT22_col_a 		0.773 0.684
HAT2
M06929_2.00 		Arabidopsis thaliana
NHAATGATTRN
NYAATCATTDN		 Dap-seq
OMalley et al.(2016)
HAT2_colamp_a 		0.773 0.667
HAT2
M06930_2.00 		Arabidopsis thaliana
WNYAATCATWD
HWATGATTRNW		 Dap-seq
OMalley et al.(2016)
HAT2_col_v31 		0.773 0.667
HAT1
M02047_2.00 		Arabidopsis thaliana
NMATGATTRN
NYAATCATKN		 PBM
Weirauch et al.(2014)
pTH8107 		0.773 0.649
HAT1
M06922_2.00 		Arabidopsis thaliana
NHAATGATTRNNWDW
WHWNNYAATCATTDN		 Dap-seq
OMalley et al.(2016)
HAT1_col_a 		0.773 0.649
HAT1
M06923_2.00 		Arabidopsis thaliana
NYAATCATTDN
NHAATGATTRN		 Dap-seq
OMalley et al.(2016)
HAT1_colamp_a 		0.773 0.649
HAT3
M00728_2.00 		Arabidopsis thaliana
DTGATTRV
BYAATCAH		 PBM
Chang et al.(2013)
pTH7400 		0.728 0.667
ATHB-4
M01065_2.00 		Arabidopsis thaliana
NBMTGCATRNN
NNYATGCAKVN		 PBM
Sullivan et al.(2014)
pTH8184 		0.728 0.649
ATHB-4
M02042_2.00 		Arabidopsis thaliana
NNWTNATTRN
NYAATNAWNN		 PBM
Weirauch et al.(2014)
pTH8667 		0.728 0.649
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.2__1356__AT1G70920.1 Homeodomain 69 125

Links

Other Homeodomain family TFs
Other Arabidopsis lyrata TFs

692 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Alligator_sinensis_CCG016667.1 Alligator sinensis Alligator_sinensis_CCG016667.1 N 0.000
ENSAPLG00000014876 Anas platyrhynchos ENSAPLG00000014876 N 0.000
TRERF1 Anolis carolinensis ENSACAG00000001080 N 0.000
ENSBTAP00000020376-D1 Bos grunniens ENSBTAP00000020376-D1 N 0.000
TRERF1 Bos taurus ENSBTAG00000015321 N 0.000
TRERF1 Callithrix jacchus ENSCJAG00000004347 N 0.000
Aan_R011464 Calypte anna Aan_R011464 N 0.000
TRERF1 Canis familiaris ENSCAFG00000001642 N 0.000
TRERF1 Cavia porcellus ENSCPOG00000015717 N 0.000
TRERF1 Choloepus hoffmanni ENSCHOG00000006120 N 0.000
TRERF1 Equus caballus ENSECAG00000016971 N 0.000
TRERF1 Felis catus ENSFCAG00000011210 N 0.000
ENSFALG00000012590 Ficedula albicollis ENSFALG00000012590 N 0.000
TRERF1 Gallus gallus ENSGALG00000009896 N 0.000
TRERF1 Gorilla gorilla ENSGGOG00000012813 N 0.000
TRERF1 Homo sapiens ENSG00000124496 N 0.000
ENSSTOG00000022996 Ictidomys tridecemlineatus ENSSTOG00000022996 N 0.000
TRERF1 Loxodonta africana ENSLAFG00000007825 N 0.000
ENSP00000362013 Macaca fascicularis ENSP00000362013 N 0.000
TRERF1 Meleagris gallopavo ENSMGAG00000013894 N 0.000
TRERF1 Monodelphis domestica ENSMODG00000019042 N 0.000
ENSMPUG00000013360 Mustela putorius furo ENSMPUG00000013360 N 0.000
Myotis_brandtii_Trerf1_10015386 Myotis brandtii Myotis_brandtii_Trerf1_10015386 N 0.000
TRERF1 Myotis lucifugus ENSMLUG00000016748 N 0.000
ENSNLEG00000004772 Nomascus leucogenys ENSNLEG00000004772 N 0.000
Ogr07462 Ophisaurus gracilis Ogr07462 N 0.000
TRERF1 Ornithorhynchus anatinus ENSOANG00000008467 N 0.000
TRERF1 Otolemur garnettii ENSOGAG00000025610 N 0.000
ENSOARG00000003358 Ovis aries ENSOARG00000003358 N 0.000
ENSPANG00000009451 Papio anubis ENSPANG00000009451 N 0.000
ENSPSIG00000009755 Pelodiscus sinensis ENSPSIG00000009755 N 0.000
Pvit_13408 Pogona vitticeps Pvit_13408 N 0.000
ENSPPYG00000016614 Pongo abelii ENSPPYG00000016614 N 0.000
TRERF1 Pteropus vampyrus ENSPVAG00000007626 N 0.000
Trerf1 Rattus norvegicus ENSRNOG00000022598 N 0.000
ENSSHAG00000004599 Sarcophilus harrisii ENSSHAG00000004599 N 0.000
TRERF1 Sus scrofa ENSSSCG00000001639 N 0.000
TRERF1 Taeniopygia guttata ENSTGUG00000003250 N 0.000
ENSTSYG00000003874 Tarsius syrichta ENSTSYG00000003874 N 0.000
ENSTBEG00000012133 Tupaia belangeri ENSTBEG00000012133 N 0.000
TRERF1 Tursiops truncatus ENSTTRG00000014065 N 0.000