ATHB-1 (Arabidopsis lyrata)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 fgenesh2_kg.3__78__AT3G01470.1 T218464_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HAT5
M06914_2.00 		Arabidopsis thaliana
NHAATAATTDW
WHAATTATTDN		 Dap-seq
OMalley et al.(2016)
HAT5_col_a 		0.867 0.982
HAT5
M06915_2.00 		Arabidopsis thaliana
WNYAATAATTRWDN
NHWYAATTATTRNW		 Dap-seq
OMalley et al.(2016)
HAT5_colamp_a 		0.867 0.982
HAT5
M02683_2.00 		Arabidopsis thaliana
SCAATAATTNNV
BNNAATTATTGS		 SELEX
Mathelier et al.(2014)
MA0008.2 		0.867 0.982
HAT5
M10624_2.00 		Arabidopsis thaliana
YSCAATAATTNNVN
NBNNAATTATTGSR		 Transfac
Matys et al.(2006)
P$ATHB1_01 		0.867 0.982
estExt_gwp_gw1.C_70211
M02220_2.00 		Physcomitrella patens
HMATNANDNN
NNHNTNATKD		 PBM
Weirauch et al.(2014)
pTH8489 		0.813 0.807
ATHB-16
M02050_2.00 		Arabidopsis thaliana
YAATMATT
AATKATTR		 PBM
Weirauch et al.(2014)
pTH7270 		0.813 0.789
ATHB-6
M02040_2.00 		Arabidopsis thaliana
HATNATTDN
NHAATNATD		 PBM
Weirauch et al.(2014)
pTH7670 		0.813 0.772
ATHB-6
M06909_2.00 		Arabidopsis thaliana
NNNHATKATTR
YAATMATDNNN		 Dap-seq
OMalley et al.(2016)
ATHB6_col_a 		0.813 0.772
ATHB-6
M06910_2.00 		Arabidopsis thaliana
NCAATAATTRN
NYAATTATTGN		 Dap-seq
OMalley et al.(2016)
ATHB6_colamp_a 		0.813 0.772
ATHB-13
M06900_2.00 		Arabidopsis thaliana
HYAATAATTDD
HHAATTATTRD		 Dap-seq
OMalley et al.(2016)
ATHB13_col_a 		0.796 0.754
ATHB-13
M06901_2.00 		Arabidopsis thaliana
NYAATAATTRW
WYAATTATTRN		 Dap-seq
OMalley et al.(2016)
ATHB13_colamp_a 		0.796 0.754
ATHB-5
M06932_2.00 		Arabidopsis thaliana
NYAATMATTND
HNAATKATTRN		 Dap-seq
OMalley et al.(2016)
ATHB5_col_a 		0.796 0.754
ATHB-5
M06933_2.00 		Arabidopsis thaliana
NYAATMATTN
NAATKATTRN		 Dap-seq
OMalley et al.(2016)
ATHB5_colamp_a 		0.796 0.754
ATHB-5
M02684_2.00 		Arabidopsis thaliana
CAATVATTGVVSV
BSBBCAATBATTG		 SELEX
Mathelier et al.(2014)
MA0110.2 		0.796 0.754
ATHB-5
M10630_2.00 		Arabidopsis thaliana
CAATVATTG
CAATBATTG		 Transfac
Matys et al.(2006)
P$ATHB5_01 		0.796 0.754
ATHB-21
M06907_2.00 		Arabidopsis thaliana
NNWHCAATWATTDN
NHAATWATTGDWNN		 Dap-seq
OMalley et al.(2016)
ATHB21_col_a 		0.723 0.649
ATHB-21
M06908_2.00 		Arabidopsis thaliana
WWDDNNNHAATWATTGDTNN
NNAHCAATWATTDNNNHHWW		 Dap-seq
OMalley et al.(2016)
ATHB21_colamp_a 		0.723 0.649
HB-5
M06924_2.00 		Arabidopsis thaliana
NNAHCAATWATTKDNNNHWWH
DWWDNNNHMAATWATTGDTNN		 Dap-seq
OMalley et al.(2016)
ATHB40_col_a 		0.722 0.667
HB-5
M06925_2.00 		Arabidopsis thaliana
HHAATWATTGDWNN
NNWHCAATWATTDD		 Dap-seq
OMalley et al.(2016)
ATHB40_colamp_a 		0.722 0.667
ATHB-53
M06934_2.00 		Arabidopsis thaliana
HMAATAATTRD
HYAATTATTKD		 Dap-seq
OMalley et al.(2016)
ATHB53_col_a 		0.718 0.649
ATHB-53
M06935_2.00 		Arabidopsis thaliana
NNWHCAATWATTDDN
NHHAATWATTGDWNN		 Dap-seq
OMalley et al.(2016)
ATHB53_colamp_a 		0.718 0.649
PK20392.1
M01250_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11331 		0.657 0.789
PK20392.1
M01251_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11332 		0.657 0.789
ATHB-20
M06912_2.00 		Arabidopsis thaliana
HYAATAATTRD
HYAATTATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_col_a 		0.637 0.754
ATHB-20
M06913_2.00 		Arabidopsis thaliana
HYAATMATTRD
HYAATKATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_colamp_a 		0.637 0.754
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.3__78__AT3G01470.1 Homeodomain 64 120

Links

Other Homeodomain family TFs
Other Arabidopsis lyrata TFs

801 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
nAv.1.0.1.g00022 Acanthocheilonema viteae nAv.1.0.1.g00022 I 0.000
AAEL004707 Aedes aegypti AAEL004707 I 0.000
ENSAMEG00000014091 Ailuropoda melanoleuca ENSAMEG00000014091 I 0.000
Alligator_sinensis_CCG013675.1 Alligator sinensis Alligator_sinensis_CCG013675.1 I 0.000
ENSAPLG00000004046 Anas platyrhynchos ENSAPLG00000004046 I 0.000
ACOC_0000843601 Angiostrongylus costaricensis ACOC_0000843601 I 0.000
ASIM_0001155801 Anisakis simplex ASIM_0001155801 I 0.000
HHEX Anolis carolinensis ENSACAG00000006660 I 0.000
AARA001840 Anopheles arabiensis AARA001840 I 0.000
AATE006277 Anopheles atroparvus AATE006277 I 0.000
ACHR001525 Anopheles christyi ACHR001525 I 0.000
ACOM034050 Anopheles coluzzii ACOM034050 I 0.000
ACUA024331 Anopheles culicifacies ACUA024331 I 0.000
ADIR002846 Anopheles dirus ADIR002846 I 0.000
AEPI001110 Anopheles epiroticus AEPI001110 I 0.000
AFAF018650 Anopheles farauti AFAF018650 I 0.000
AFUN007808 Anopheles funestus AFUN007808 I 0.000
AGAP001389 Anopheles gambiae AGAP001389 I 0.000
AMAM015319 Anopheles maculatus AMAM015319 I 0.000
AMEC012825 Anopheles melas AMEC012825 I 0.000
AMEM017315 Anopheles merus AMEM017315 I 0.000
AMIN000568 Anopheles minimus AMIN000568 I 0.000
AQUA006568 Anopheles quadriannulatus AQUA006568 I 0.000
ASIS014034 Anopheles sinensis ASIS014034 I 0.000
ASTEI07538 Anopheles stephensi ASTEI07538 I 0.000
Afo_R002655 Aptenodytes forsteri Afo_R002655 I 0.000
ASU_02199 Ascaris suum ASU_02199 I 0.000
ENSAMXG00000011188 Astyanax mexicanus ENSAMXG00000011188 I 0.000
BGIBMGA010054 Bombyx mori BGIBMGA010054 I 0.000
ENSBTAP00000018899-D1 Bos grunniens ENSBTAP00000018899-D1 I 0.000
HHEX Bos taurus ENSBTAG00000014217 I 0.000
e_gw.54.243.1 Branchiostoma floridae e_gw.54.243.1 I 0.000
e_gw.56.215.1 Branchiostoma floridae e_gw.56.215.1 I 0.000
Bm5107 Brugia malayi Bm5107 I 0.000
BTMF_0001400701 Brugia timori BTMF_0001400701 I 0.000
Brh_R009926 Buceros rhinoceros Brh_R009926 I 0.000
BXY_0632900 Bursaphelenchus xylophilus BXY_0632900 I 0.000
CBN29205 Caenorhabditis brenneri CBN29205 I 0.000
CBG08137 Caenorhabditis briggsae CBG08137 I 0.000
pha-2 Caenorhabditis elegans WBGene00004011 D 0.000
CRE17126 Caenorhabditis remanei CRE17126 I 0.000
HHEX Callithrix jacchus ENSCJAG00000008627 I 0.000
Aan_R007509 Calypte anna Aan_R007509 I 0.000
HHEX Canis familiaris ENSCAFG00000007502 I 0.000
CapteG110019 Capitella teleta CapteG110019 I 0.000
CapteG129537 Capitella teleta CapteG129537 I 0.000
ENSCPOG00000021993 Cavia porcellus ENSCPOG00000021993 I 0.000
Cmyd_10016939 Chelonia mydas Cmyd_10016939 I 0.000
ENSCSAG00000006543 Chlorocebus sabaeus ENSCSAG00000006543 I 0.000
HHEX Choloepus hoffmanni ENSCHOG00000005837 I 0.000
hex Ciona intestinalis ENSCING00000001270 I 0.000
ENSCSAVG00000001801 Ciona savignyi ENSCSAVG00000001801 I 0.000
CGI_10025054 Crassostrea gigas CGI_10025054 I 0.000
CpipJ_CPIJ003318 Culex pipiens CpipJ_CPIJ003318 I 0.000
CPIJ003318 Culex quinquefasciatus CPIJ003318 I 0.000
KGM_13906 Danaus plexippus KGM_13906 I 0.000
CABZ01079847.1 Danio rerio ENSDARG00000098231 I 0.000
DAPPUDRAFT_229438 Daphnia pulex DAPPUDRAFT_229438 I 0.000
HHEX Dasypus novemcinctus ENSDNOG00000041940 I 0.000
nDi.2.2.2.g05290 Dirofilaria immitis nDi.2.2.2.g05290 I 0.000
DME_0000899101 Dracunculus medinensis DME_0000899101 I 0.000
GF18520 Drosophila ananassae FBgn0095538 I 0.000
GG14915 Drosophila erecta FBgn0107169 I 0.000
GH19308 Drosophila grimshawi FBgn0126773 I 0.000
HHEX Drosophila melanogaster FBgn0038852 D 0.000
GI23524 Drosophila mojavensis FBgn0146250 I 0.000
GL12681 Drosophila persimilis FBgn0150287 I 0.000
GA20065 Drosophila pseudoobscura FBgn0080061 I 0.000
GM15106 Drosophila sechellia FBgn0170026 I 0.000
GD20010 Drosophila simulans FBgn0191493 I 0.000
GJ10276 Drosophila virilis FBgn0197562 I 0.000
GK13080 Drosophila willistoni FBgn0215089 I 0.000
HHEX Echinops telfairi ENSETEG00000009524 N 0.000
HHEX Equus caballus ENSECAG00000005199 I 0.000
ENSEEUG00000003019 Erinaceus europaeus ENSEEUG00000003019 N 0.000
HHEX Felis catus ENSFCAG00000023875 I 0.000
ENSFALG00000007921 Ficedula albicollis ENSFALG00000007921 I 0.000
ENSGMOG00000011697 Gadus morhua ENSGMOG00000011697 I 0.000
ENSGALG00000029169 Gallus gallus ENSGALG00000029169 I 0.000
HHEX Gasterosteus aculeatus ENSGACG00000015385 I 0.000
Gfo_R002376 Geospiza fortis Gfo_R002376 I 0.000
GPLIN_000004000 Globodera pallida GPLIN_000004000 I 0.000
ENSGGOG00000026464 Gorilla gorilla ENSGGOG00000026464 I 0.000
ENSGGOG00000027676 Gorilla gorilla ENSGGOG00000027676 I 0.000
HCOI01904700 Haemonchus contortus HCOI01904700 I 0.000
HPLM_0000551901 Haemonchus placei HPLM_0000551901 I 0.000
HMEL004646 Heliconius melpomene HMEL004646 I 0.000
HelroG80789 Helobdella robusta HelroG80789 I 0.000
HHEX Homo sapiens ENSG00000152804 I 0.000
ENSSTOG00000006255 Ictidomys tridecemlineatus ENSSTOG00000006255 I 0.000
ENSLACG00000009588 Latimeria chalumnae ENSLACG00000009588 I 0.000
ENSLACG00000014170 Latimeria chalumnae ENSLACG00000014170 I 0.000
ENSLOCG00000007051 Lepisosteus oculatus ENSLOCG00000007051 I 0.000
nLs.2.1.2.g00270 Litomosoides sigmodontis nLs.2.1.2.g00270 I 0.000
LOAG_11830 Loa loa LOAG_11830 I 0.000
LotgiG128951 Lottia gigantea LotgiG128951 I 0.000
ENSLAFG00000005359 Loxodonta africana ENSLAFG00000005359 I 0.000
LCUP007736 Lucilia cuprina LCUP007736 I 0.000
LLOJ007496 Lutzomyia longipalpis LLOJ007496 I 0.000
ENSP00000282728 Macaca fascicularis ENSP00000282728 I 0.000
HHEX Macaca mulatta ENSMMUG00000011789 I 0.000
ENSMEUG00000004291 Macropus eugenii ENSMEUG00000004291 I 0.000
MESCA008304 Megaselia scalaris MESCA008304 I 0.000
ENSMGAG00000009052 Meleagris gallopavo ENSMGAG00000009052 I 0.000
augustus_masked-nMf.1.1.scaf09384-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf09384-processed-gene-0.0 I 0.000
MhA1_Contig193.frz3.gene1 Meloidogyne hapla MhA1_Contig193.frz3.gene1 I 0.000
ENSMICG00000014969 Microcebus murinus ENSMICG00000014969 N 0.000
HHEX Monodelphis domestica ENSMODG00000006444 I 0.000
ENSMPUG00000017219 Mustela putorius furo ENSMPUG00000017219 I 0.000
Hhex Mus musculus ENSMUSG00000024986 I 0.000
Myotis_brandtii_KIF11_10018005 Myotis brandtii Myotis_brandtii_KIF11_10018005 I 0.000
ENSMLUG00000013333 Myotis lucifugus ENSMLUG00000013333 I 0.000
ENSMLUG00000024763 Myotis lucifugus ENSMLUG00000024763 I 0.000
NEMVEDRAFT_v1g39891 Nematostella vectensis NEMVEDRAFT_v1g39891 I 0.000
NBR_0000887601 Nippostrongylus brasiliensis NBR_0000887601 I 0.000
HHEX Ochotona princeps ENSOPRG00000003896 I 0.000
OFLC_0000354301 Onchocerca flexuosa OFLC_0000354301 I 0.000
nOo.2.0.1.g09114 Onchocerca ochengi nOo.2.0.1.g09114 I 0.000
WBGene00240685 Onchocerca volvulus WBGene00240685 I 0.000
Ogr00908 Ophisaurus gracilis Ogr00908 I 0.000
ENSONIG00000007247 Oreochromis niloticus ENSONIG00000007247 I 0.000
HHEX Oryctolagus cuniculus ENSOCUG00000016719 I 0.000
HHEX Otolemur garnettii ENSOGAG00000015201 I 0.000
HHEX Pan troglodytes ENSPTRG00000002760 I 0.000
ENSPANG00000021555 Papio anubis ENSPANG00000021555 I 0.000
PTRK_0000720600 Parastrongyloides trichosuri PTRK_0000720600 I 0.000
ENSPSIG00000015884 Pelodiscus sinensis ENSPSIG00000015884 I 0.000
ENSPMAG00000009445 Petromyzon marinus ENSPMAG00000009445 I 0.000
ENSPFOG00000009869 Poecilia formosa ENSPFOG00000009869 I 0.000
Pvit_14369 Pogona vitticeps Pvit_14369 I 0.000
scaffold24-EXSNAP2012.65 Pristionchus exspectatus scaffold24-EXSNAP2012.65 I 0.000
HHEX Pteropus vampyrus ENSPVAG00000007094 I 0.000
Hhex Rattus norvegicus ENSRNOG00000016595 I 0.000
RSKR_0000094800 Rhabditophanes kr3021 RSKR_0000094800 I 0.000
nRc.2.0.1.g06585 Romanomermis culicivorax nRc.2.0.1.g06585 I 0.000
Sakowv30040087m.g Saccoglossus kowalevskii Sakowv30040087m.g I 0.000
ENSSHAG00000018185 Sarcophilus harrisii ENSSHAG00000018185 I 0.000
L596_g25649 Steinernema carpocapsae L596_g25649 I 0.000
L889_g29725 Steinernema feltiae L889_g29725 I 0.000
L898_g1404 Steinernema monticolum L898_g1404 I 0.000
L892_g7017 Steinernema scapterisci L892_g7017 I 0.000
SMAR000779 Strigamia maritima SMAR000779 I 0.000
SPU_027215 Strongylocentrotus purpuratus SPU_027215 I 0.000
SPAL_0000841600 Strongyloides papillosus SPAL_0000841600 I 0.000
SSTP_0000145800 Strongyloides stercoralis SSTP_0000145800 I 0.000
SVE_1799000 Strongyloides venezuelensis SVE_1799000 I 0.000
ENSSSCG00000010472 Sus scrofa ENSSSCG00000010472 I 0.000
ENSTGUG00000008924 Taeniopygia guttata ENSTGUG00000008924 I 0.000
ENSTGUG00000013882 Taeniopygia guttata ENSTGUG00000013882 I 0.000
HHEX Takifugu rubripes ENSTRUG00000004234 I 0.000
TELCIR_00798 Teladorsagia circumcincta TELCIR_00798 I 0.000
tetur29g00560 Tetranychus urticae tetur29g00560 I 0.000
HHEX Tetraodon nigroviridis ENSTNIG00000005879 I 0.000
TCLT_0000379201 Thelazia callipaeda TCLT_0000379201 I 0.000
TC004555 Tribolium castaneum TC004555 I 0.000
TriadG9560 Trichoplax adhaerens TriadG9560 I 0.000
ENSTBEG00000001339 Tupaia belangeri ENSTBEG00000001339 I 0.000
HHEX Tursiops truncatus ENSTTRG00000012365 I 0.000
Tal_R011621 Tyto alba Tal_R011621 I 0.000
HHEX Vicugna pacos ENSVPAG00000009916 I 0.000
WUBG_10995 Wuchereria bancrofti WUBG_10995 I 0.000
hhex.L Xenopus laevis XB-GENE-865680 I 0.000
hhex Xenopus tropicalis XB-GENE-487159 I 0.000
L798_02156 Zootermopsis nevadensis L798_02156 I 0.000