MTR_5g085860 (Medicago truncatula)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 MTR_5g085860 T220837_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
KNAT7
M01064_2.00 		Arabidopsis thaliana
TGACRKST
ASMYGTCA		 PBM
Sullivan et al.(2014)
pTH9798 		0.752 0.612
KNAT4
M01238_2.00 		Arabidopsis thaliana
NNGACNNNN
NNNNGTCNN		 PBM
Lambert et al.(2019)
pTH9968 		0.752 0.592
KNAT3
M02051_2.00 		Arabidopsis thaliana
NNNGACVBNN
NNVBGTCNNN		 PBM
Weirauch et al.(2014)
pTH7600 		0.752 0.592
HOS66
M02156_2.00 		Oryza sativa
NNNNDHNN
NNDHNNNN		 PBM
Weirauch et al.(2014)
pTH8332 		0.739 0.612
PK25034.1
M01254_2.00 		Cannabis sativa
NNTGACRKBN
NVMYGTCANN		 PBM
Lambert et al.(2019)
pTH11259 		0.694 0.837
Q5EVH4_OIKDI
M02227_2.00 		Oikopleura dioica
NTGACAKN
NMTGTCAN		 PBM
Weirauch et al.(2014)
pTH6041 		0.667 0.469
MEIS3
M03093_2.00 		Homo sapiens
DTGACANN
NNTGTCAH		 SELEX
Jolma et al.(2013)
MEIS3_1 		0.642 0.469
MEIS3
M03094_2.00 		Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Jolma et al.(2013)
MEIS3_2 		0.642 0.469
MEIS3
M04951_2.00 		Homo sapiens
TGWCABVTGWCA
TGWCABVTGWCA		 SELEX
Yin et al.(2017)
MEIS3_eDBD_HT-SELEX 		0.642 0.469
MEIS3
M04952_2.00 		Homo sapiens
YGWCABVTGWCR
YGWCABVTGWCR		 SELEX
Yin et al.(2017)
MEIS3_eDBD_Methyl-HT-SELEX 		0.642 0.469
ATH1
M10627_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATH1_01 		0.607 0.408
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AES99890 Homeodomain 213 264

Links

Other Homeodomain family TFs
Other Medicago truncatula TFs

1243 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000004941 Ailuropoda melanoleuca ENSAMEG00000004941 I 0.000
Alligator_sinensis_CCG005376.1 Alligator sinensis Alligator_sinensis_CCG005376.1 N 0.000
Alligator_sinensis_CCG007400.1 Alligator sinensis Alligator_sinensis_CCG007400.1 I 0.000
Alligator_sinensis_CCG015970.1 Alligator sinensis Alligator_sinensis_CCG015970.1 I 0.000
Alligator_sinensis_CCG017464.1 Alligator sinensis Alligator_sinensis_CCG017464.1 I 0.000
Alligator_sinensis_CCG019716.1 Alligator sinensis Alligator_sinensis_CCG019716.1 I 0.000
Alligator_sinensis_CCG019998.1 Alligator sinensis Alligator_sinensis_CCG019998.1 I 0.000
ANCCAN_23190 Ancylostoma caninum ANCCAN_23190 I 0.000
ANCCEY_05900 Ancylostoma ceylanicum ANCCEY_05900 I 0.000
ANCCEY_06024 Ancylostoma ceylanicum ANCCEY_06024 I 0.000
ACAC_0000020101 Angiostrongylus cantonensis ACAC_0000020101 I 0.000
ENSACAG00000004933 Anolis carolinensis ENSACAG00000004933 I 0.000
ENSACAG00000012070 Anolis carolinensis ENSACAG00000012070 I 0.000
DLX1 Anolis carolinensis ENSACAG00000016175 I 0.000
AALB004916 Anopheles albimanus AALB004916 I 0.000
AALB005001 Anopheles albimanus AALB005001 I 0.000
AALB007707 Anopheles albimanus AALB007707 I 0.000
AATE014392 Anopheles atroparvus AATE014392 I 0.000
ACOM031312 Anopheles coluzzii ACOM031312 I 0.000
ACUA013183 Anopheles culicifacies ACUA013183 I 0.000
ACUA026846 Anopheles culicifacies ACUA026846 N 0.000
ADAC003417 Anopheles darlingi ADAC003417 I 0.000
ADIR001763 Anopheles dirus ADIR001763 I 0.000
ADIR008635 Anopheles dirus ADIR008635 I 0.000
AFAF017311 Anopheles farauti AFAF017311 I 0.000
AFUN007609 Anopheles funestus AFUN007609 I 0.000
AFUN010407 Anopheles funestus AFUN010407 N 0.000
AMAM009062 Anopheles maculatus AMAM009062 I 0.000
AMAM017394 Anopheles maculatus AMAM017394 N 0.000
AMAM018342 Anopheles maculatus AMAM018342 I 0.000
AMEC018259 Anopheles melas AMEC018259 I 0.000
AMEM013417 Anopheles merus AMEM013417 I 0.000
AMIN008435 Anopheles minimus AMIN008435 I 0.000
AMIN011086 Anopheles minimus AMIN011086 I 0.000
ASIS013253 Anopheles sinensis ASIS013253 I 0.000
ASTEI02548 Anopheles stephensi ASTEI02548 I 0.000
Afo_R006907 Aptenodytes forsteri Afo_R006907 I 0.000
Afo_R008309 Aptenodytes forsteri Afo_R008309 I 0.000
Afo_R008451 Aptenodytes forsteri Afo_R008451 I 0.000
ACEP22182 Atta cephalotes ACEP22182 I 0.000
BGLB001192 Biomphalaria glabrata BGLB001192 I 0.000
BGLB001559 Biomphalaria glabrata BGLB001559 N 0.000
BGLB007215 Biomphalaria glabrata BGLB007215 I 0.000
ENSBTAP00000006046-D1 Bos grunniens ENSBTAP00000006046-D1 I 0.000
Brh_R009027 Buceros rhinoceros Brh_R009027 I 0.000
CJA38412 Caenorhabditis japonica CJA38412 I 0.000
Aan_R000006 Calypte anna Aan_R000006 I 0.000
MEOX1 Canis familiaris ENSCAFG00000014476 I 0.000
CapteG41929 Capitella teleta CapteG41929 I 0.000
Cmyd_10004252 Chelonia mydas Cmyd_10004252 I 0.000
Cmyd_10006886 Chelonia mydas Cmyd_10006886 N 0.000
ENSCHOG00000002762 Choloepus hoffmanni ENSCHOG00000002762 I 0.000
ENSCHOG00000002853 Choloepus hoffmanni ENSCHOG00000002853 I 0.000
ENSCHOG00000004334 Choloepus hoffmanni ENSCHOG00000004334 I 0.000
DLX1 Choloepus hoffmanni ENSCHOG00000006718 I 0.000
CLEC003990 Cimex lectularius CLEC003990 I 0.000
csin105841 Clonorchis sinensis csin105841 I 0.000
csin111503 Clonorchis sinensis csin111503 N 0.000
CpipJ_CPIJ004949 Culex pipiens CpipJ_CPIJ004949 I 0.000
CPIJ004949 Culex quinquefasciatus CPIJ004949 I 0.000
KGM_17907 Danaus plexippus KGM_17907 I 0.000
DILT_0000246201 Diphyllobothrium latum DILT_0000246201 N 0.000
DILT_0000834901 Diphyllobothrium latum DILT_0000834901 I 0.000
nDi.2.2.2.g12340 Dirofilaria immitis nDi.2.2.2.g12340 I 0.000
GD19379 Drosophila simulans FBgn0085026 N 0.000
DLX1 Echinops telfairi ENSETEG00000017573 I 0.000
EEL_0001069601 Elaeophora elaphi EEL_0001069601 I 0.000
ENSECAG00000000452 Equus caballus ENSECAG00000000452 I 0.000
ENSEEUG00000015763 Erinaceus europaeus ENSEEUG00000015763 I 0.000
ENSFALG00000005185 Ficedula albicollis ENSFALG00000005185 I 0.000
M7I_7350 Glarea lozoyensis M7I_7350 N 0.000
GPLIN_001485000 Globodera pallida GPLIN_001485000 I 0.000
GPUH_0000172001 Gongylonema pulchrum GPUH_0000172001 I 0.000
HPLM_0001305101 Haemonchus placei HPLM_0001305101 N 0.000
HMEL008500 Heliconius melpomene HMEL008500 I 0.000
HelroG91488 Helobdella robusta HelroG91488 N 0.000
EuGene3000598 Heterobasidion annosum EuGene3000598 N 0.000
HETIRDRAFT_320886 Heterobasidion irregulare HETIRDRAFT_320886 N 0.000
Hba_11782 Heterorhabditis bacteriophora Hba_11782 I 0.000
Hba_14264 Heterorhabditis bacteriophora Hba_14264 I 0.000
PITX1 Homo sapiens ENSG00000069011 D 0.000
DLX4 Homo sapiens ENSG00000108813 D 0.000
DLX1 Homo sapiens ENSG00000144355 D 0.000
HDID_0000675101 Hymenolepis diminuta HDID_0000675101 N 0.000
HDID_0000783701 Hymenolepis diminuta HDID_0000783701 I 0.000
HmN_000399900 Hymenolepis microstoma HmN_000399900 N 0.000
ISCW005966 Ixodes scapularis ISCW005966 I 0.000
ISCW020504 Ixodes scapularis ISCW020504 I 0.000
JAAARDRAFT_49688 Jaapia argillacea JAAARDRAFT_49688 N 0.000
LDEC001249 Leptinotarsa decemlineata LDEC001249 I 0.000
LotgiG56601 Lottia gigantea LotgiG56601 I 0.000
ENSMEUG00000012817 Macropus eugenii ENSMEUG00000012817 I 0.000
MESCA002805 Megaselia scalaris MESCA002805 I 0.000
MESCA003774 Megaselia scalaris MESCA003774 I 0.000
MESCA004913 Megaselia scalaris MESCA004913 N 0.000
MESCA007051 Megaselia scalaris MESCA007051 I 0.000
HOXB1 Meleagris gallopavo ENSMGAG00000002567 I 0.000
ENSMGAG00000010010 Meleagris gallopavo ENSMGAG00000010010 I 0.000
MCINX006169 Melitaea cinxia MCINX006169 I 0.000
maker-nMf.1.1.scaf05338-augustus-gene-0.5 Meloidogyne floridensis maker-nMf.1.1.scaf05338-augustus-gene-0.5 N 0.000
maker-nMf.1.1.scaf06360-augustus-gene-0.6 Meloidogyne floridensis maker-nMf.1.1.scaf06360-augustus-gene-0.6 I 0.000
maker-nMf.1.1.scaf10679-snap-gene-0.4 Meloidogyne floridensis maker-nMf.1.1.scaf10679-snap-gene-0.4 I 0.000
MhA1_Contig168.frz3.gene2 Meloidogyne hapla MhA1_Contig168.frz3.gene2 I 0.000
MhA1_Contig541.frz3.gene24 Meloidogyne hapla MhA1_Contig541.frz3.gene24 I 0.000
MhA1_Contig878.frz3.gene2 Meloidogyne hapla MhA1_Contig878.frz3.gene2 I 0.000
Minc06164 Meloidogyne incognita Minc06164 I 0.000
Minc08686 Meloidogyne incognita Minc08686 N 0.000
ENSMLUG00000025271 Myotis lucifugus ENSMLUG00000025271 I 0.000
NBR_0001369301 Nippostrongylus brasiliensis NBR_0001369301 I 0.000
NBR_0002231201 Nippostrongylus brasiliensis NBR_0002231201 I 0.000
DLX5 Ochotona princeps ENSOPRG00000001891 I 0.000
OTX2 Ochotona princeps ENSOPRG00000015946 I 0.000
Ocbimv22024516m.g Octopus bimaculoides Ocbimv22024516m.g I 0.000
Ocbimv22038354m.g Octopus bimaculoides Ocbimv22038354m.g I 0.000
OESDEN_23981 Oesophagostomum dentatum OESDEN_23981 I 0.000
SNAPOd2T00004995001 Oikopleura dioica SNAPOd2T00004995001 N 0.000
SNAPOd2T00009387001 Oikopleura dioica SNAPOd2T00009387001 I 0.000
Ogr07758 Ophisaurus gracilis Ogr07758 N 0.000
Ogr18027 Ophisaurus gracilis Ogr18027 I 0.000
T265_04102 Opisthorchis viverrini T265_04102 N 0.000
T265_14910 Opisthorchis viverrini T265_14910 I 0.000
ENSOANG00000030226 Ornithorhynchus anatinus ENSOANG00000030226 I 0.000
ENSOANG00000031547 Ornithorhynchus anatinus ENSOANG00000031547 I 0.000
HOXD12 Otolemur garnettii ENSOGAG00000015689 N 0.000
ENSOARG00000004347 Ovis aries ENSOARG00000004347 I 0.000
ENSPMAG00000007538 Petromyzon marinus ENSPMAG00000007538 I 0.000
M404DRAFT_217469 Pisolithus tinctorius M404DRAFT_217469 N 0.000
Pvit_07422 Pogona vitticeps Pvit_07422 N 0.000
scaffold54-EXSNAP2012.70 Pristionchus exspectatus scaffold54-EXSNAP2012.70 I 0.000
PPA25532 Pristionchus pacificus PPA25532 I 0.000
Ppa-tab-1 Pristionchus pacificus PPA28228 I 0.000
DLX1 Procavia capensis ENSPCAG00000008892 I 0.000
PXEA_0000761101 Protopolystoma xenopodis PXEA_0000761101 I 0.000
PXEA_0001880101 Protopolystoma xenopodis PXEA_0001880101 I 0.000
MNX1 Pteropus vampyrus ENSPVAG00000006643 I 0.000
nRc.2.0.1.g42753 Romanomermis culicivorax nRc.2.0.1.g42753 N 0.000
SCUD_0001148701 Schistosoma curassoni SCUD_0001148701 I 0.000
A_02618 Schistosoma haematobium A_02618 N 0.000
A_07396 Schistosoma haematobium A_07396 I 0.000
C_01049 Schistosoma haematobium C_01049 N 0.000
Sjc_0000440 Schistosoma japonicum Sjc_0000440 I 0.000
Sjc_0004020 Schistosoma japonicum Sjc_0004020 I 0.000
Sjc_0075360 Schistosoma japonicum Sjc_0075360 I 0.000
Sjc_0133190 Schistosoma japonicum Sjc_0133190 N 0.000
Smp_087070 Schistosoma mansoni Smp_087070 N 0.000
SMTD_0000803701 Schistosoma mattheei SMTD_0000803701 N 0.000
SMTD_0002090201 Schistosoma mattheei SMTD_0002090201 I 0.000
SROB_0000422701 Schistosoma rodhaini SROB_0000422701 I 0.000
SCLCIDRAFT_821214 Scleroderma citrinum SCLCIDRAFT_821214 N 0.000
SBAD_0000184901 Soboliphyme baturini SBAD_0000184901 I 0.000
SBAD_0001101301 Soboliphyme baturini SBAD_0001101301 N 0.000
SINV18775 Solenopsis invicta SINV18775 I 0.000
SINV24822 Solenopsis invicta SINV24822 I 0.000
SINV25862 Solenopsis invicta SINV25862 I 0.000
SPER_0002304201 Spirometra erinaceieuropaei SPER_0002304201 N 0.000
SPER_0002786601 Spirometra erinaceieuropaei SPER_0002786601 N 0.000
SPER_0003017401 Spirometra erinaceieuropaei SPER_0003017401 N 0.000
TASK_0000335401 Taenia asiatica TASK_0000335401 N 0.000
TsM_001125800 Taenia solium TsM_001125800 I 0.000
TELCIR_08309 Teladorsagia circumcincta TELCIR_08309 I 0.000
TRE_0000552801 Trichobilharzia regenti TRE_0000552801 I 0.000
TRE_0001317801 Trichobilharzia regenti TRE_0001317801 I 0.000
TTRE_0000302101 Trichuris trichiura TTRE_0000302101 I 0.000
ENSTBEG00000005238 Tupaia belangeri ENSTBEG00000005238 I 0.000
Tal_R010888 Tyto alba Tal_R010888 I 0.000
hoxd9.S Xenopus laevis XB-GENE-485796 I 0.000
ENSXMAG00000020166 Xiphophorus maculatus ENSXMAG00000020166 I 0.000
L798_07902 Zootermopsis nevadensis L798_07902 I 0.000