NEMVEDRAFT_v1g38792 (Nematostella vectensis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 NEMVEDRAFT_v1g38792 T221046_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DUXA
M01247_2.00 		Homo sapiens
NTGATTRNN
NNYAATCAN		 PBM
Lambert et al.(2019)
pTH11226 		0.659 0.514
DUXA
M03244_2.00 		Homo sapiens
NHRAYBYAATCAN
NTGATTRVRTYDN		 SELEX
Jolma et al.(2013)
DUXA_1 		0.659 0.514
DUXA
M05402_2.00 		Homo sapiens
TRAYBYAATCA
TGATTRVRTYA		 SELEX
Yin et al.(2017)
DUXA_eDBD_HT-SELEX 		0.659 0.514
DUXA
M10756_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$DUXA_02 		0.659 0.514
DUXA
M05403_2.00 		Homo sapiens
YRAYBYAATCA
TGATTRVRTYR		 SELEX
Yin et al.(2017)
DUXA_eDBD_Methyl-HT-SELEX 		0.659 0.514
DUX4
M08135_2.00 		Homo sapiens
TAAYYYAATCA
TGATTRRRTTA		 ChIP-seq
Mathelier et al.(2014)
MA0468.1 		0.645 0.523
DUX4
M09167_2.00 		Homo sapiens
TAAYYYAATCA
TGATTRRRTTA		 Misc
Kulakovskiy et al.(2013)
DUX4_HUMAN.H11MO.0.A 		0.645 0.523
DUX4
M10757_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$DUX4_01 		0.645 0.523
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EDO45304 Homeodomain 1 57
EDO45304 Homeodomain 79 132

Links

Other Homeodomain family TFs
Other Nematostella vectensis TFs

36 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_26069 Aegilops tauschii F775_26069 I
AMTR_s00127p00060060 Amborella trichopoda AMTR_s00127p00060060 I
Aquca_010_00060 Aquilegia coerulea Aquca_010_00060 I
Aquca_015_00177 Aquilegia coerulea Aquca_015_00177 I
AGL21 Arabidopsis lyrata fgenesh2_kg.7__253__AT4G37940.1 I
AGL21 Arabidopsis thaliana AT4G37940 I
Bostr.19427s0033 Boechera stricta Bostr.19427s0033 I
Bostr.25542s0226 Boechera stricta Bostr.25542s0226 I
BRADI1G72150 Brachypodium distachyon BRADI1G72150 I
Bo1g003270 Brassica oleracea Bo1g003270 I
Bo3g153080 Brassica oleracea Bo3g153080 I
Bra010623 Brassica rapa Bra010623 I
Bra011797 Brassica rapa Bra011797 I
PK11571.1 Cannabis sativa PK11571.1 I
PK20651.1 Cannabis sativa PK20651.1 I
PK27158.1 Cannabis sativa PK27158.1 I
PK27820.1 Cannabis sativa PK27820.1 I
PK28167.1 Cannabis sativa PK28167.1 I
Cagra.1080s0003 Capsella grandiflora Cagra.1080s0003 I
Cagra.5414s0059 Capsella grandiflora Cagra.5414s0059 I
Carubv10006453m.g Capsella rubella Carubv10006453m.g I
Carubv10023996m.g Capsella rubella Carubv10023996m.g I
evm.TU.supercontig_21.11 Carica papaya evm.TU.supercontig_21.11 I
evm.TU.supercontig_55.31 Carica papaya evm.TU.supercontig_55.31 I
Ca_01491 Cicer arietinum Ca_01491 I
Cla013108 Citrullus lanatus Cla013108 N
Cla014307 Citrullus lanatus Cla014307 I
Cla014322 Citrullus lanatus Cla014322 I
Cla022499 Citrullus lanatus Cla022499 I
Ciclev10029776m.g Citrus clementina Ciclev10029776m.g I
orange1.1g027190m.g Citrus sinensis orange1.1g027190m.g I
orange1.1g040972m.g Citrus sinensis orange1.1g040972m.g I
Cucsa.103820 Cucumis sativus Cucsa.103820 I
Cucsa.104010 Cucumis sativus Cucsa.104010 I
Cucsa.160640 Cucumis sativus Cucsa.160640 I
Cucsa.331840 Cucumis sativus Cucsa.331840 I
Eucgr.F00420 Eucalyptus grandis Eucgr.F00420 I
Eucgr.I00556 Eucalyptus grandis Eucgr.I00556 I
Thhalv10022995m.g Eutrema salsugineum Thhalv10022995m.g I
Thhalv10026139m.g Eutrema salsugineum Thhalv10026139m.g I
Thhalv10026757m.g Eutrema salsugineum Thhalv10026757m.g I
gene22696-v1.0-hybrid Fragaria vesca gene22696-v1.0-hybrid I
GLYMA01G02525 Glycine max GLYMA01G02525 I
GLYMA04G10015 Glycine max GLYMA04G10015 I
GLYMA06G10020 Glycine max GLYMA06G10020 I
GLYMA07G30040 Glycine max GLYMA07G30040 I
GLYMA08G07001 Glycine max GLYMA08G07001 I
GLYMA08G07260 Glycine max GLYMA08G07260 I
GLYMA09G33451 Glycine max GLYMA09G33451 I
GLYMA13G32810 Glycine max GLYMA13G32810 I
GLYMA13G33031 Glycine max GLYMA13G33031 I
GLYMA13G33051 Glycine max GLYMA13G33051 I
GLYMA15G06302 Glycine max GLYMA15G06302 I
GLYMA15G06314 Glycine max GLYMA15G06314 I
GLYMA15G06470 Glycine max GLYMA15G06470 I
Gorai.002G142700 Gossypium raimondii Gorai.002G142700 I
Gorai.005G225500 Gossypium raimondii Gorai.005G225500 I
Gorai.007G058200 Gossypium raimondii Gorai.007G058200 I
Gorai.008G017200 Gossypium raimondii Gorai.008G017200 I
Gorai.008G092300 Gossypium raimondii Gorai.008G092300 I
Gorai.010G035000 Gossypium raimondii Gorai.010G035000 I
Gorai.013G055700 Gossypium raimondii Gorai.013G055700 I
LPERR03G05670 Leersia perrieri LPERR03G05670 I
chr4.CM0100.30.nc Lotus japonicus chr4.CM0100.30.nc I
chr6.CM0055.180.nc Lotus japonicus chr6.CM0055.180.nc I
LjT38P01.180.nd Lotus japonicus LjT38P01.180.nd I
MDP0000209705 Malus domestica MDP0000209705 I
MDP0000228942 Malus domestica MDP0000228942 I
MDP0000285581 Malus domestica MDP0000285581 I
MDP0000475549 Malus domestica MDP0000475549 I
cassava1567.valid.m1 Manihot esculenta cassava1567.valid.m1 I
cassava31070.valid.m1 Manihot esculenta cassava31070.valid.m1 I
cassava31071.valid.m1 Manihot esculenta cassava31071.valid.m1 I
cassava44571.m1 Manihot esculenta cassava44571.m1 I
cassava4651.m1 Manihot esculenta cassava4651.m1 I
MTR_2g009890 Medicago truncatula MTR_2g009890 I
MTR_4g093970 Medicago truncatula MTR_4g093970 I
MTR_5g031000 Medicago truncatula MTR_5g031000 I
MTR_5g066180 Medicago truncatula MTR_5g066180 I
mgf015964m Mimulus guttatus mgf015964m I
mgf023192m Mimulus guttatus mgf023192m I
mgf025830m Mimulus guttatus mgf025830m I
GSMUA_Achr10G19290_001 Musa acuminata GSMUA_Achr10G19290_001 I
GSMUA_Achr10G30040_001 Musa acuminata GSMUA_Achr10G30040_001 I
GSMUA_Achr3G06800_001 Musa acuminata GSMUA_Achr3G06800_001 I
GSMUA_Achr5G24560_001 Musa acuminata GSMUA_Achr5G24560_001 I
GSMUA_Achr7G12610_001 Musa acuminata GSMUA_Achr7G12610_001 I
GSMUA_Achr9G15180_001 Musa acuminata GSMUA_Achr9G15180_001 I
OBART03G06320 Oryza barthii OBART03G06320 I
OBART06G14060 Oryza barthii OBART06G14060 I
OBART08G15610 Oryza barthii OBART08G15610 I
OB08G23110 Oryza brachyantha OB08G23110 I
OB11G21480 Oryza brachyantha OB11G21480 I
ORGLA03G0061100 Oryza glaberrima ORGLA03G0061100 I
ORGLA06G0125600 Oryza glaberrima ORGLA06G0125600 I
ORGLA08G0137000 Oryza glaberrima ORGLA08G0137000 I
OGLUM03G06330 Oryza glumaepatula OGLUM03G06330 I
OGLUM06G15040 Oryza glumaepatula OGLUM06G15040 I
OGLUM08G16360 Oryza glumaepatula OGLUM08G16360 I
BGIOSGA011317 Oryza indica BGIOSGA011317 I
BGIOSGA022872 Oryza indica BGIOSGA022872 I
BGIOSGA026939 Oryza indica BGIOSGA026939 I
OLONG_011763 Oryza longistaminata OLONG_011763 I
OLONG_018231 Oryza longistaminata OLONG_018231 I
OMERI03G06190 Oryza meridionalis OMERI03G06190 I
OMERI06G15180 Oryza meridionalis OMERI06G15180 I
ONIVA02G06550 Oryza nivara ONIVA02G06550 I
ONIVA06G16870 Oryza nivara ONIVA06G16870 I
ONIVA08G16700 Oryza nivara ONIVA08G16700 I
OPUNC03G06100 Oryza punctata OPUNC03G06100 I
OPUNC06G13170 Oryza punctata OPUNC06G13170 I
OPUNC08G13690 Oryza punctata OPUNC08G13690 I
ORUFI03G06210 Oryza rufipogon ORUFI03G06210 I
ORUFI06G14980 Oryza rufipogon ORUFI06G14980 I
OS03G0186600 Oryza sativa OS03G0186600 I
OS06G0347700 Oryza sativa OS06G0347700 I
Pavir.Fb01587 Panicum virgatum Pavir.Fb01587 I
Pavir.Ia04527 Panicum virgatum Pavir.Ia04527 I
Pavir.Ib00555 Panicum virgatum Pavir.Ib00555 I
POPTR_0002s10570 Populus trichocarpa POPTR_0002s10570 I
POPTR_0007s03270 Populus trichocarpa POPTR_0007s03270 I
POPTR_0007s03290 Populus trichocarpa POPTR_0007s03290 I
POPTR_0007s03310 Populus trichocarpa POPTR_0007s03310 I
POPTR_0017s07170 Populus trichocarpa POPTR_0017s07170 I
Pm002166 Prunus mume Pm002166 I
Pm002271 Prunus mume Pm002271 I
Pm022002 Prunus mume Pm022002 I
PRUPE_ppa011063mg Prunus persica PRUPE_ppa011063mg I
PRUPE_ppa022274mg Prunus persica PRUPE_ppa022274mg I
29838.m001690 Ricinus communis 29838.m001690 I
SapurV1A.0004s1140 Salix purpurea SapurV1A.0004s1140 I
SapurV1A.0019s1110 Salix purpurea SapurV1A.0019s1110 I
SapurV1A.0187s0010 Salix purpurea SapurV1A.0187s0010 I
SapurV1A.0463s0130 Salix purpurea SapurV1A.0463s0130 I
Si014885m.g Setaria italica Si014885m.g I
Si037358m.g Setaria italica Si037358m.g I
Solyc01g105800.2 Solanum lycopersicum Solyc01g105800.2 I
Solyc11g010570.1 Solanum lycopersicum Solyc11g010570.1 I
PGSC0003DMG400009363 Solanum tuberosum PGSC0003DMG400009363 I
PGSC0003DMG400016203 Solanum tuberosum PGSC0003DMG400016203 I
PGSC0003DMG400033570 Solanum tuberosum PGSC0003DMG400033570 I
Sb01g044810 Sorghum bicolor Sb01g044810 I
Sb07g021110 Sorghum bicolor Sb07g021110 I
TCM_000931 Theobroma cacao TCM_000931 I
TCM_000992 Theobroma cacao TCM_000992 I
TCM_007378 Theobroma cacao TCM_007378 I
TCM_034501 Theobroma cacao TCM_034501 I
Traes_4BL_410DEBFD3 Triticum aestivum Traes_4BL_410DEBFD3 I
Traes_4DL_67EFB6303 Triticum aestivum Traes_4DL_67EFB6303 I
VIT_00s0211g00150 Vitis vinifera VIT_00s0211g00150 I
VIT_00s0211g00180 Vitis vinifera VIT_00s0211g00180 I
VIT_00s0729g00010 Vitis vinifera VIT_00s0729g00010 I
VIT_03s0017g00360 Vitis vinifera VIT_03s0017g00360 I
VIT_03s0017g00440 Vitis vinifera VIT_03s0017g00440 I
VIT_03s0017g00450 Vitis vinifera VIT_03s0017g00450 I
VIT_03s0097g00160 Vitis vinifera VIT_03s0097g00160 I
VIT_03s0167g00100 Vitis vinifera VIT_03s0167g00100 I
VIT_15s0024g01860 Vitis vinifera VIT_15s0024g01860 I
VIT_15s0024g02000 Vitis vinifera VIT_15s0024g02000 I
VIT_15s0107g00120 Vitis vinifera VIT_15s0107g00120 I
AGL24 Vitis vinifera VIT_18s0001g07460 I
ANR1 Vitis vinifera VIT_18s0001g07900 I
GRMZM2G052045 Zea mays GRMZM2G052045 I
GRMZM2G059102 Zea mays GRMZM2G059102 I