Bostr.19427s0033 (Boechera stricta)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Bostr.19427s0033 T257594_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL16
M06987_2.00 		Arabidopsis thaliana
TWCCHAAWDDGGWAA
TTWCCHHWTTDGGWA		 Dap-seq
OMalley et al.(2016)
AGL16_col_a 		0.771 0.771
AGL16
M06988_2.00 		Arabidopsis thaliana
WDWNTTWCCHWAWWDGGAAAS
STTTCCHWWTWDGGWAANWHW		 Dap-seq
OMalley et al.(2016)
AGL16_colamp_a 		0.771 0.771
Q9FVN1_MAIZE
M10982_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS2_03 		0.729 0.729
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bostr.19427s0033.1.p MADS box 10 57
Bostr.19427s0033.2.p MADS box 10 57

Links

Other MADS box family TFs
Other Boechera stricta TFs

277 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AGL17 Arabidopsis thaliana AT2G22630 I 0.979
AGL17 Arabidopsis lyrata fgenesh1_pm.C_scaffold_4000157 I 0.958
Cagra.1080s0003 Capsella grandiflora Cagra.1080s0003 I 0.958
Carubv10023996m.g Capsella rubella Carubv10023996m.g I 0.958
Bo8g100930 Brassica oleracea Bo8g100930 I 0.938
Bra030222 Brassica rapa Bra030222 I 0.938
Bra039921 Brassica rapa Bra039921 I 0.938
Thhalv10000598m.g Eutrema salsugineum Thhalv10000598m.g I 0.938
Bo4g149900 Brassica oleracea Bo4g149900 I 0.917
AGL21 Arabidopsis thaliana AT4G37940 I 0.896
Bo1g003270 Brassica oleracea Bo1g003270 I 0.896
Bo3g153080 Brassica oleracea Bo3g153080 I 0.896
Bra010623 Brassica rapa Bra010623 I 0.896
Bra011797 Brassica rapa Bra011797 I 0.896
AGL21 Arabidopsis lyrata fgenesh2_kg.7__253__AT4G37940.1 I 0.896
Cagra.5414s0059 Capsella grandiflora Cagra.5414s0059 I 0.896
Carubv10006453m.g Capsella rubella Carubv10006453m.g I 0.896
Thhalv10026139m.g Eutrema salsugineum Thhalv10026139m.g I 0.896
Bostr.25542s0226 Boechera stricta Bostr.25542s0226 I 0.875
TCM_000931 Theobroma cacao TCM_000931 I 0.833
VIT_00s0211g00180 Vitis vinifera VIT_00s0211g00180 I 0.833
PK27820.1 Cannabis sativa PK27820.1 I 0.833
Bo7g025330 Brassica oleracea Bo7g025330 I 0.812
Solyc02g091550.1 Solanum lycopersicum Solyc02g091550.1 I 0.812
VIT_00s0211g00150 Vitis vinifera VIT_00s0211g00150 I 0.812
Ca_14956 Cicer arietinum Ca_14956 I 0.812
cassava39185.m1 Manihot esculenta cassava39185.m1 I 0.812
cassava44571.m1 Manihot esculenta cassava44571.m1 I 0.812
Lus10028214.g Linum usitatissimum Lus10028214.g I 0.812
Lus10029556.g Linum usitatissimum Lus10029556.g I 0.812
MDP0000783966 Malus domestica MDP0000783966 I 0.812
orange1.1g037016m.g Citrus sinensis orange1.1g037016m.g I 0.812
Bo7g116760 Brassica oleracea Bo7g116760 I 0.792
Bra017638 Brassica rapa Bra017638 I 0.792
GLYMA01G02525 Glycine max GLYMA01G02525 I 0.792
GLYMA02G38091 Glycine max GLYMA02G38091 I 0.792
GLYMA09G33451 Glycine max GLYMA09G33451 I 0.792
GLYMA14G36221 Glycine max GLYMA14G36221 I 0.792
GRMZM2G044408 Zea mays GRMZM2G044408 I 0.792
GSMUA_Achr3G20280_001 Musa acuminata GSMUA_Achr3G20280_001 I 0.792
MTR_5g066960 Medicago truncatula MTR_5g066960 I 0.792
POPTR_0005s19440 Populus trichocarpa POPTR_0005s19440 I 0.792
Solyc12g088080.1 Solanum lycopersicum Solyc12g088080.1 I 0.792
TCM_034549 Theobroma cacao TCM_034549 I 0.792
ANR1 Vitis vinifera VIT_18s0001g07900 I 0.792
Pm002271 Prunus mume Pm002271 I 0.792
Pm004349 Prunus mume Pm004349 I 0.792
29596.m000699 Ricinus communis 29596.m000699 I 0.792
cassava19528.m1 Manihot esculenta cassava19528.m1 I 0.792
mgf007519m Mimulus guttatus mgf007519m I 0.792
mgf021543m Mimulus guttatus mgf021543m I 0.792
Aquca_010_00060 Aquilegia coerulea Aquca_010_00060 I 0.792
evm.TU.supercontig_177.14 Carica papaya evm.TU.supercontig_177.14 I 0.792
gene22696-v1.0-hybrid Fragaria vesca gene22696-v1.0-hybrid I 0.792
Gorai.007G058200 Gossypium raimondii Gorai.007G058200 I 0.792
Gorai.009G227500 Gossypium raimondii Gorai.009G227500 I 0.792
Gorai.010G032700 Gossypium raimondii Gorai.010G032700 I 0.792
Lus10042918.g Linum usitatissimum Lus10042918.g I 0.792
MDP0000234911 Malus domestica MDP0000234911 I 0.792
SapurV1A.0019s1110 Salix purpurea SapurV1A.0019s1110 I 0.792
Thhalv10022995m.g Eutrema salsugineum Thhalv10022995m.g I 0.792
Thhalv10026116m.g Eutrema salsugineum Thhalv10026116m.g I 0.792
MDP0000285581 Malus domestica MDP0000285581 I 0.787
AMTR_s00046p00208680 Amborella trichopoda AMTR_s00046p00208680 I 0.771
ANR1 Arabidopsis thaliana AT2G14210 I 0.771
AGL16 Arabidopsis thaliana AT3G57230 D 0.771
AGL18 Arabidopsis thaliana AT3G57390 I 0.771
Bra011509 Brassica rapa Bra011509 I 0.771
MTR_2g009890 Medicago truncatula MTR_2g009890 I 0.771
MTR_5g031000 Medicago truncatula MTR_5g031000 I 0.771
PGSC0003DMG400009349 Solanum tuberosum PGSC0003DMG400009349 I 0.771
PRUPE_ppa024736mg Prunus persica PRUPE_ppa024736mg I 0.771
Sb04g028960 Sorghum bicolor Sb04g028960 I 0.771
Si019880m.g Setaria italica Si019880m.g I 0.771
Solyc01g106170.2 Solanum lycopersicum Solyc01g106170.2 I 0.771
Solyc04g076680.2 Solanum lycopersicum Solyc04g076680.2 I 0.771
TCM_007324 Theobroma cacao TCM_007324 I 0.771
VIT_03s0097g00160 Vitis vinifera VIT_03s0097g00160 I 0.771
Cla014307 Citrullus lanatus Cla014307 I 0.771
Pm021962 Prunus mume Pm021962 I 0.771
cassava33801.m1 Manihot esculenta cassava33801.m1 I 0.771
cassava4651.m1 Manihot esculenta cassava4651.m1 I 0.771
Cucsa.103820 Cucumis sativus Cucsa.103820 I 0.771
Cucsa.331900 Cucumis sativus Cucsa.331900 I 0.771
mgf019667m Mimulus guttatus mgf019667m I 0.771
Aquca_009_00337 Aquilegia coerulea Aquca_009_00337 I 0.771
Bostr.13083s0004 Boechera stricta Bostr.13083s0004 I 0.771
Bostr.20505s0022 Boechera stricta Bostr.20505s0022 I 0.771
Cagra.0578s0054 Capsella grandiflora Cagra.0578s0054 I 0.771
Cagra.0578s0070 Capsella grandiflora Cagra.0578s0070 I 0.771
Cagra.3821s0004 Capsella grandiflora Cagra.3821s0004 I 0.771
Carubv10015972m.g Capsella rubella Carubv10015972m.g I 0.771
Carubv10017886m.g Capsella rubella Carubv10017886m.g I 0.771
Carubv10017951m.g Capsella rubella Carubv10017951m.g I 0.771
gene25618-v1.0-hybrid Fragaria vesca gene25618-v1.0-hybrid I 0.771
gene26429-v1.0-hybrid Fragaria vesca gene26429-v1.0-hybrid I 0.771
Gorai.008G018100 Gossypium raimondii Gorai.008G018100 I 0.771
Gorai.013G053800 Gossypium raimondii Gorai.013G053800 I 0.771
Gorai.013G054000 Gossypium raimondii Gorai.013G054000 I 0.771
Lus10007100.g Linum usitatissimum Lus10007100.g I 0.771
Lus10020477.g Linum usitatissimum Lus10020477.g I 0.771
Pavir.Aa00445 Panicum virgatum Pavir.Aa00445 I 0.771
Pavir.Ab02921 Panicum virgatum Pavir.Ab02921 I 0.771
Pavir.Fb01587 Panicum virgatum Pavir.Fb01587 I 0.771
SapurV1A.0004s0740 Salix purpurea SapurV1A.0004s0740 I 0.771
SapurV1A.1370s0060 Salix purpurea SapurV1A.1370s0060 I 0.771
SapurV1A.2345s0030 Salix purpurea SapurV1A.2345s0030 I 0.771
Bo1g007520 Brassica oleracea Bo1g007520 I 0.750
Bo6g072840 Brassica oleracea Bo6g072840 I 0.750
Bra003278 Brassica rapa Bra003278 I 0.750
AGL16 Arabidopsis lyrata fgenesh2_kg.5__2158__AT3G57230.1 I 0.750
GLYMA08G07001 Glycine max GLYMA08G07001 I 0.750
GRMZM2G055782 Zea mays GRMZM2G055782 I 0.750
GSMUA_Achr10G30040_001 Musa acuminata GSMUA_Achr10G30040_001 I 0.750
GSMUA_Achr3G07310_001 Musa acuminata GSMUA_Achr3G07310_001 I 0.750
GSMUA_Achr9G15540_001 Musa acuminata GSMUA_Achr9G15540_001 I 0.750
OGLUM04G14880 Oryza glumaepatula OGLUM04G14880 I 0.750
OPUNC04G12890 Oryza punctata OPUNC04G12890 I 0.750
POPTR_0001s29100 Populus trichocarpa POPTR_0001s29100 I 0.750
POPTR_0002s11040 Populus trichocarpa POPTR_0002s11040 I 0.750
Sb07g021110 Sorghum bicolor Sb07g021110 I 0.750
Si014885m.g Setaria italica Si014885m.g I 0.750
Cla023427 Citrullus lanatus Cla023427 I 0.750
29804.m001536 Ricinus communis 29804.m001536 I 0.750
cassava26340.m1 Manihot esculenta cassava26340.m1 I 0.750
Eucgr.F02161 Eucalyptus grandis Eucgr.F02161 I 0.750
MDP0000228942 Malus domestica MDP0000228942 I 0.750
MDP0000475549 Malus domestica MDP0000475549 I 0.750
chr6.CM0055.180.nc Lotus japonicus chr6.CM0055.180.nc I 0.750
LjSGA_021013.1 Lotus japonicus LjSGA_021013.1 I 0.750
PK27158.1 Cannabis sativa PK27158.1 I 0.743
AMTR_s00053p00228660 Amborella trichopoda AMTR_s00053p00228660 I 0.729
BGIOSGA008494 Oryza indica BGIOSGA008494 I 0.729
Bo8g091790 Brassica oleracea Bo8g091790 I 0.729
Bra007324 Brassica rapa Bra007324 I 0.729
BRADI3G46920 Brachypodium distachyon BRADI3G46920 I 0.729
BRADI3G57017 Brachypodium distachyon BRADI3G57017 I 0.729
GLYMA13G32810 Glycine max GLYMA13G32810 I 0.729
GLYMA15G06470 Glycine max GLYMA15G06470 I 0.729
GRMZM2G052045 Zea mays GRMZM2G052045 I 0.729
GRMZM2G316366 Zea mays GRMZM2G316366 I 0.729
GSMUA_Achr5G24560_001 Musa acuminata GSMUA_Achr5G24560_001 I 0.729
LPERR02G17700 Leersia perrieri LPERR02G17700 I 0.729
LPERR02G25570 Leersia perrieri LPERR02G25570 I 0.729
LPERR04G11770 Leersia perrieri LPERR04G11770 I 0.729
MTR_4g093030 Medicago truncatula MTR_4g093030 I 0.729
OB02G29310 Oryza brachyantha OB02G29310 I 0.729
OB02G38310 Oryza brachyantha OB02G38310 I 0.729
OB04G22330 Oryza brachyantha OB04G22330 I 0.729
OB08G23110 Oryza brachyantha OB08G23110 I 0.729
OBART02G21870 Oryza barthii OBART02G21870 I 0.729
OBART02G31280 Oryza barthii OBART02G31280 I 0.729
OBART04G15020 Oryza barthii OBART04G15020 I 0.729
OGLUM02G22050 Oryza glumaepatula OGLUM02G22050 I 0.729
OGLUM02G31980 Oryza glumaepatula OGLUM02G31980 I 0.729
OLONG_004860 Oryza longistaminata OLONG_004860 I 0.729
OLONG_016283 Oryza longistaminata OLONG_016283 I 0.729
OLONG_024179 Oryza longistaminata OLONG_024179 I 0.729
OMERI02G21410 Oryza meridionalis OMERI02G21410 I 0.729
OMERI02G30060 Oryza meridionalis OMERI02G30060 I 0.729
ONIVA02G24100 Oryza nivara ONIVA02G24100 I 0.729
ONIVA02G34790 Oryza nivara ONIVA02G34790 I 0.729
ONIVA04G13150 Oryza nivara ONIVA04G13150 I 0.729
OPUNC02G19600 Oryza punctata OPUNC02G19600 I 0.729
OPUNC02G29000 Oryza punctata OPUNC02G29000 I 0.729
ORGLA02G0267800 Oryza glaberrima ORGLA02G0267800 I 0.729
ORGLA04G0120000 Oryza glaberrima ORGLA04G0120000 I 0.729
ORUFI02G22950 Oryza rufipogon ORUFI02G22950 I 0.729
ORUFI02G32980 Oryza rufipogon ORUFI02G32980 I 0.729
ORUFI04G16410 Oryza rufipogon ORUFI04G16410 I 0.729
MADS27 Oryza sativa OS02G0579600 I 0.729
MADS57 Oryza sativa OS02G0731200 I 0.729
OS04G0461300 Oryza sativa OS04G0461300 I 0.729
Q9FVN1_MAIZE Zea mays Q9FVN1_MAIZE D 0.729
Sb04g024010 Sorghum bicolor Sb04g024010 I 0.729
Si019337m.g Setaria italica Si019337m.g I 0.729
TCM_005818 Theobroma cacao TCM_005818 I 0.729
Traes_7AS_8123257BA Triticum aestivum Traes_7AS_8123257BA I 0.729
TRIUR3_09108 Triticum urartu TRIUR3_09108 I 0.729
Ca_01491 Cicer arietinum Ca_01491 I 0.729
Ca_19854 Cicer arietinum Ca_19854 I 0.729
cassava45813.m1 Manihot esculenta cassava45813.m1 I 0.729
e_gw1.171.4.1 Physcomitrella patens e_gw1.171.4.1 I 0.729
e_gw1.209.37.1 Physcomitrella patens e_gw1.209.37.1 I 0.729
mgb000125m Mimulus guttatus mgb000125m I 0.729
Bostr.20505s0007 Boechera stricta Bostr.20505s0007 I 0.729
Eucgr.F02141 Eucalyptus grandis Eucgr.F02141 I 0.729
Eucgr.I02598 Eucalyptus grandis Eucgr.I02598 I 0.729
Eucgr.I02600 Eucalyptus grandis Eucgr.I02600 I 0.729
Gorai.004G169000 Gossypium raimondii Gorai.004G169000 I 0.729
Gorai.008G092300 Gossypium raimondii Gorai.008G092300 I 0.729
Gorai.008G112400 Gossypium raimondii Gorai.008G112400 I 0.729
Pavir.Aa01540 Panicum virgatum Pavir.Aa01540 I 0.729
LjSGA_019451.1 Lotus japonicus LjSGA_019451.1 I 0.729
AMTR_s00109p00015260 Amborella trichopoda AMTR_s00109p00015260 I 0.708
BGIOSGA008983 Oryza indica BGIOSGA008983 I 0.708
BGIOSGA016105 Oryza indica BGIOSGA016105 I 0.708
BGIOSGA026939 Oryza indica BGIOSGA026939 I 0.708
Bo1g039080 Brassica oleracea Bo1g039080 I 0.708
Bo3g165710 Brassica oleracea Bo3g165710 I 0.708
Bo4g111230 Brassica oleracea Bo4g111230 I 0.708
Bra013812 Brassica rapa Bra013812 I 0.708
Bra020826 Brassica rapa Bra020826 I 0.708
BRADI5G12440 Brachypodium distachyon BRADI5G12440 I 0.708
F775_25533 Aegilops tauschii F775_25533 I 0.708
F775_27066 Aegilops tauschii F775_27066 I 0.708
GLYMA02G33040 Glycine max GLYMA02G33040 I 0.708
GRMZM2G032905 Zea mays GRMZM2G032905 I 0.708
GSMUA_Achr1G03630_001 Musa acuminata GSMUA_Achr1G03630_001 I 0.708
GSMUA_Achr5G10250_001 Musa acuminata GSMUA_Achr5G10250_001 I 0.708
GSMUA_Achr7G12610_001 Musa acuminata GSMUA_Achr7G12610_001 I 0.708
LPERR08G12860 Leersia perrieri LPERR08G12860 I 0.708
MLOC_4407 Hordeum vulgare MLOC_4407 I 0.708
MTR_0003s0590 Medicago truncatula MTR_0003s0590 I 0.708
OB01G48510 Oryza brachyantha OB01G48510 I 0.708
OBART04G07050 Oryza barthii OBART04G07050 I 0.708
OBART08G15610 Oryza barthii OBART08G15610 I 0.708
OGLUM04G06810 Oryza glumaepatula OGLUM04G06810 I 0.708
OGLUM08G16360 Oryza glumaepatula OGLUM08G16360 I 0.708
OLONG_009563 Oryza longistaminata OLONG_009563 I 0.708
OLONG_011763 Oryza longistaminata OLONG_011763 I 0.708
OMERI08G12880 Oryza meridionalis OMERI08G12880 I 0.708
ONIVA04G05310 Oryza nivara ONIVA04G05310 I 0.708
ONIVA08G16700 Oryza nivara ONIVA08G16700 I 0.708
OPUNC08G13690 Oryza punctata OPUNC08G13690 I 0.708
ORGLA04G0053100 Oryza glaberrima ORGLA04G0053100 I 0.708
ORGLA08G0137000 Oryza glaberrima ORGLA08G0137000 I 0.708
MADS23 Oryza sativa OS08G0431900 I 0.708
PGSC0003DMG400009363 Solanum tuberosum PGSC0003DMG400009363 I 0.708
PGSC0003DMG400016203 Solanum tuberosum PGSC0003DMG400016203 I 0.708
PGSC0003DMG400023729 Solanum tuberosum PGSC0003DMG400023729 I 0.708
AGL15 Populus trichocarpa POPTR_0009s06060 I 0.708
PRUPE_ppa021434mg Prunus persica PRUPE_ppa021434mg I 0.708
Si012517m.g Setaria italica Si012517m.g I 0.708
Solyc10g080030.1 Solanum lycopersicum Solyc10g080030.1 I 0.708
Solyc11g010570.1 Solanum lycopersicum Solyc11g010570.1 I 0.708
Traes_2AL_267502097 Triticum aestivum Traes_2AL_267502097 I 0.708
Traes_2BL_3E613DE21 Triticum aestivum Traes_2BL_3E613DE21 I 0.708
Traes_2DL_662837152 Triticum aestivum Traes_2DL_662837152 I 0.708
Traes_2DL_6A10DD109 Triticum aestivum Traes_2DL_6A10DD109 I 0.708
Traes_5AS_029A65B0A Triticum aestivum Traes_5AS_029A65B0A I 0.708
Traes_5BS_BC15EF87A Triticum aestivum Traes_5BS_BC15EF87A I 0.708
Traes_5DS_3EBE121C7 Triticum aestivum Traes_5DS_3EBE121C7 I 0.708
Traes_7AS_376CD50EA Triticum aestivum Traes_7AS_376CD50EA I 0.708
Traes_7BS_DC9822CEF Triticum aestivum Traes_7BS_DC9822CEF I 0.708
Traes_7DS_05F0F0B64 Triticum aestivum Traes_7DS_05F0F0B64 I 0.708
Traes_7DS_59CBF5647 Triticum aestivum Traes_7DS_59CBF5647 I 0.708
Traes_7DS_D9008CC09 Triticum aestivum Traes_7DS_D9008CC09 I 0.708
TRIUR3_09267 Triticum urartu TRIUR3_09267 I 0.708
TRIUR3_17292 Triticum urartu TRIUR3_17292 I 0.708
TRIUR3_19891 Triticum urartu TRIUR3_19891 I 0.708
AGL18 Vitis vinifera VIT_08s0007g08790 I 0.708
AGL15 Vitis vinifera VIT_13s0158g00100 I 0.708
Ca_24925 Cicer arietinum Ca_24925 I 0.708
Cla013108 Citrullus lanatus Cla013108 N 0.708
Cla017565 Citrullus lanatus Cla017565 I 0.708
Pm016579 Prunus mume Pm016579 I 0.708
cassava21958.m1 Manihot esculenta cassava21958.m1 I 0.708
Cucsa.190400 Cucumis sativus Cucsa.190400 N 0.708
Cucsa.248870 Cucumis sativus Cucsa.248870 I 0.708
estExt_fgenesh1_kg.C_260002 Physcomitrella patens estExt_fgenesh1_kg.C_260002 I 0.708
Aquca_015_00177 Aquilegia coerulea Aquca_015_00177 I 0.708
Ciclev10032519m.g Citrus clementina Ciclev10032519m.g I 0.708
Eucgr.F02145 Eucalyptus grandis Eucgr.F02145 I 0.708
Eucgr.G03284 Eucalyptus grandis Eucgr.G03284 I 0.708
Eucgr.I02596 Eucalyptus grandis Eucgr.I02596 I 0.708
gene19425-v1.0-hybrid Fragaria vesca gene19425-v1.0-hybrid I 0.708
gene29503-v1.0-hybrid Fragaria vesca gene29503-v1.0-hybrid I 0.708
Gorai.002G142700 Gossypium raimondii Gorai.002G142700 I 0.708
Gorai.003G090800 Gossypium raimondii Gorai.003G090800 I 0.708
Gorai.010G035000 Gossypium raimondii Gorai.010G035000 I 0.708
orange1.1g025240m.g Citrus sinensis orange1.1g025240m.g I 0.708
Pavir.Ga01454 Panicum virgatum Pavir.Ga01454 I 0.708
Pavir.Gb01527 Panicum virgatum Pavir.Gb01527 I 0.708
SapurV1A.0027s0860 Salix purpurea SapurV1A.0027s0860 I 0.708
chr4.CM0126.630.nc Lotus japonicus chr4.CM0126.630.nc I 0.708