OGLUM10G19540 (Oryza glumaepatula)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 OGLUM10G19540 T221471_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK24181.1
M01252_2.00 		Cannabis sativa
NNNNNNNHDH
DHDNNNNNNN		 PBM
Lambert et al.(2019)
pTH11300 		0.857 0.842
ATML1
M02048_2.00 		Arabidopsis thaliana
NNHNRHYRNN
NNYRDYNDNN		 PBM
Weirauch et al.(2014)
pTH8203 		0.850 0.772
ATML1
M10626_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ML1_01 		0.850 0.772
HDG11
M02039_2.00 		Arabidopsis thaliana
DCATTWAWKD
HMWTWAATGH		 PBM
Weirauch et al.(2014)
pTH7664 		0.841 0.789
HDG11
M06904_2.00 		Arabidopsis thaliana
DCATTWAWTRH
DYAWTWAATGH		 Dap-seq
OMalley et al.(2016)
EDT1_col 		0.841 0.789
PDF2
M06921_2.00 		Arabidopsis thaliana
WNVGAATATTCYHTN
NADRGAATATTCBNW		 Dap-seq
OMalley et al.(2016)
PDF2_col 		0.839 0.754
PDF2
M10625_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PDF2_01 		0.839 0.754
HDG1
M06917_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
HDG1_col100_a 		0.812 0.754
HDG1
M06918_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
HDG1_colamp_a 		0.812 0.754
ANL2
M02046_2.00 		Arabidopsis thaliana
NCATTWATKNN
NNMATWAATGN		 PBM
Weirauch et al.(2014)
pTH8244 		0.797 0.754
ANL2
M06919_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
ANL2_col_a 		0.797 0.754
ANL2
M06920_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
ANL2_colamp_a 		0.797 0.754
HDG9
M10628_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$HDG9_01 		0.791 0.649
HDG7
M06931_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
HDG7_col_a 		0.754 0.649
HDG7
M10629_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$HDG7_01 		0.754 0.649
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OGLUM10G19540.1 Homeodomain 144 200

Links

Other Homeodomain family TFs
Other Oryza glumaepatula TFs

618 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_004_00804 Aquilegia coerulea Aquca_004_00804 N
fgenesh2_kg.5__1832__AT3G54390.1 Arabidopsis lyrata fgenesh2_kg.5__1832__AT3G54390.1 N
AT3G54390 Arabidopsis thaliana AT3G54390 N
Bostr.0697s0050 Boechera stricta Bostr.0697s0050 N
Bo8g068640 Brassica oleracea Bo8g068640 N
Bo8g083630 Brassica oleracea Bo8g083630 N
Bra007069 Brassica rapa Bra007069 N
Cagra.0562s0030 Capsella grandiflora Cagra.0562s0030 N
Carubv10019255m.g Capsella rubella Carubv10019255m.g N
Cla010096 Citrullus lanatus Cla010096 N
GLYMA11G25570 Glycine max GLYMA11G25570 N
GLYMA13G26550 Glycine max GLYMA13G26550 N
GLYMA15G37451 Glycine max GLYMA15G37451 N
LjSGA_030847.2 Lotus japonicus LjSGA_030847.2 N
MDP0000123719 Malus domestica MDP0000123719 N
MDP0000727700 Malus domestica MDP0000727700 N
cassava22232.valid.m1 Manihot esculenta cassava22232.valid.m1 N
POPTR_0003s19470 Populus trichocarpa POPTR_0003s19470 N
POPTR_0001s06580 Populus trichocarpa POPTR_0001s06580 N
Pm016744 Prunus mume Pm016744 N
PRUPE_ppa007968mg Prunus persica PRUPE_ppa007968mg N
SapurV1A.0009s1160 Salix purpurea SapurV1A.0009s1160 N
SapurV1A.0574s0200 Salix purpurea SapurV1A.0574s0200 N
Solyc01g096470.2 Solanum lycopersicum Solyc01g096470.2 N
VIT_13s0084g00800 Vitis vinifera VIT_13s0084g00800 N