OLONG_011116 (Oryza longistaminata)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 OLONG_011116 T221508_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
KNAT7
M01064_2.00 		Arabidopsis thaliana
TGACRKST
ASMYGTCA		 PBM
Sullivan et al.(2014)
pTH9798 		0.698 0.438
KNAT4
M01238_2.00 		Arabidopsis thaliana
NNGACNNNN
NNNNGTCNN		 PBM
Lambert et al.(2019)
pTH9968 		0.696 0.500
KNAT3
M02051_2.00 		Arabidopsis thaliana
NNNGACVBNN
NNVBGTCNNN		 PBM
Weirauch et al.(2014)
pTH7600 		0.696 0.479
HOS66
M02156_2.00 		Oryza sativa
NNNNDHNN
NNDHNNNN		 PBM
Weirauch et al.(2014)
pTH8332 		0.681 0.438
Q5EVH4_OIKDI
M02227_2.00 		Oikopleura dioica
NTGACAKN
NMTGTCAN		 PBM
Weirauch et al.(2014)
pTH6041 		0.613 0.354
MEIS3
M03093_2.00 		Homo sapiens
DTGACANN
NNTGTCAH		 SELEX
Jolma et al.(2013)
MEIS3_1 		0.610 0.312
MEIS3
M03094_2.00 		Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Jolma et al.(2013)
MEIS3_2 		0.610 0.312
MEIS3
M04951_2.00 		Homo sapiens
TGWCABVTGWCA
TGWCABVTGWCA		 SELEX
Yin et al.(2017)
MEIS3_eDBD_HT-SELEX 		0.610 0.312
MEIS3
M04952_2.00 		Homo sapiens
YGWCABVTGWCR
YGWCABVTGWCR		 SELEX
Yin et al.(2017)
MEIS3_eDBD_Methyl-HT-SELEX 		0.610 0.312
ATH1
M10627_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATH1_01 		0.609 0.417
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OLONG_011116-R1 Homeodomain 197 245

Links

Other Homeodomain family TFs
Other Oryza longistaminata TFs

1165 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSP00000340671-D1 Bos grunniens ENSP00000340671-D1 I 0.000
DDIT3 Bos taurus ENSBTAG00000031544 I 0.000
DDIT3 Callithrix jacchus ENSCJAG00000007243 I 0.000
ENSCSAG00000004816 Chlorocebus sabaeus ENSCSAG00000004816 I 0.000
DDIT3 Dasypus novemcinctus ENSDNOG00000017504 I 0.000
ENSETEG00000007110 Echinops telfairi ENSETEG00000007110 I 0.000
DDIT3 Equus caballus ENSECAG00000020535 I 0.000
DDIT3 Erinaceus europaeus ENSEEUG00000003634 I 0.000
DDIT3 Gorilla gorilla ENSGGOG00000001987 I 0.000
DDIT3 Homo sapiens ENSG00000175197 D 0.000
ENSSTOG00000019858 Ictidomys tridecemlineatus ENSSTOG00000019858 I 0.000
DDIT3 Loxodonta africana ENSLAFG00000030970 I 0.000
ENSP00000340671 Macaca fascicularis ENSP00000340671 I 0.000
DDIT3 Macaca mulatta ENSMMUG00000011286 I 0.000
DDIT3 Microcebus murinus ENSMICG00000005434 I 0.000
Ddit3 Mus musculus ENSMUSG00000025408 D 0.000
DDIT3 Myotis lucifugus ENSMLUG00000001055 I 0.000
ENSNLEG00000017291 Nomascus leucogenys ENSNLEG00000017291 I 0.000
DDIT3 Ochotona princeps ENSOPRG00000006529 I 0.000
DDIT3 Oryctolagus cuniculus ENSOCUG00000023877 I 0.000
ENSOARG00000006500 Ovis aries ENSOARG00000006500 I 0.000
DDIT3 Pan troglodytes ENSPTRG00000022781 I 0.000
ENSPANG00000024001 Papio anubis ENSPANG00000024001 I 0.000
ENSPPYG00000004692 Pongo abelii ENSPPYG00000004692 I 0.000
DDIT3 Procavia capensis ENSPCAG00000016158 I 0.000
DDIT3 Pteropus vampyrus ENSPVAG00000012114 I 0.000
Ddit3 Rattus norvegicus ENSRNOG00000006789 I 0.000
DDIT3 Sorex araneus ENSSARG00000002536 I 0.000
ENSSSCG00000022482 Sus scrofa ENSSSCG00000022482 I 0.000
DDIT3 Tupaia belangeri ENSTBEG00000000521 I 0.000