RHTO_02593 (Rhodosporidium toruloides)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 RHTO_02593 T222840_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
CAD26261
M02055_2.00 		Encephalitozoon cuniculi
NNYAATWWA
TWWATTRNN		 PBM
Weirauch et al.(2014)
pTH6363 		0.680 0.491
NEMVEDRAFT_v1g105595
M02143_2.00 		Nematostella vectensis
NTWATWRN
NYWATWAN		 PBM
Weirauch et al.(2014)
pTH5503 		0.676 0.474
Hoxc12
M00508_2.00 		Mus musculus
NDTWAYNDBN
NVHNRTWAHN		 PBM
Berger et al.(2008)
Hoxc12_3480 		0.602 0.368
HOXC12
M03135_2.00 		Homo sapiens
TTTTATTRY
RYAATAAAA		 SELEX
Jolma et al.(2013)
HOXC12_1 		0.602 0.368
HOXC12
M03136_2.00 		Homo sapiens
RRTCGTAAAAH
DTTTTACGAYY		 SELEX
Jolma et al.(2013)
HOXC12_2 		0.602 0.368
HOXC12
M05083_2.00 		Homo sapiens
NGYAATAAAAN
NTTTTATTRCN		 SELEX
Yin et al.(2017)
HOXC12_eDBD_HT-SELEX_1 		0.602 0.368
HOXC12
M05084_2.00 		Homo sapiens
VRTCGTAAAHN
NDTTTACGAYB		 SELEX
Yin et al.(2017)
HOXC12_eDBD_HT-SELEX_2 		0.602 0.368
HOXC12
M05085_2.00 		Homo sapiens
NGYAATAAAAH
DTTTTATTRCN		 SELEX
Yin et al.(2017)
HOXC12_eDBD_Methyl-HT-SELEX_1 		0.602 0.368
HOXC12
M05086_2.00 		Homo sapiens
NRTCGTAAAHH
DDTTTACGAYN		 SELEX
Yin et al.(2017)
HOXC12_eDBD_Methyl-HT-SELEX_2 		0.602 0.368
hbx10
M02074_2.00 		Dictyostelium discoideum
NYAATWWN
NWWATTRN		 PBM
Weirauch et al.(2014)
pTH5547 		0.601 0.526
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EMS20645 Homeodomain 126 182

Links

Other Homeodomain family TFs
Other Rhodosporidium toruloides TFs

132 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000000665 Ailuropoda melanoleuca ENSAMEG00000000665 I 0.602
M378DRAFT_8263 Amanita muscaria M378DRAFT_8263 I 0.667
ENSAPLG00000007306 Anas platyrhynchos ENSAPLG00000007306 I 0.602
H311_05138 Anncaliia algerae H311_05138 I 0.670
ENSACAG00000010840 Anolis carolinensis ENSACAG00000010840 I 0.602
Afo_R003393 Aptenodytes forsteri Afo_R003393 I 0.602
ENSAMXG00000006895 Astyanax mexicanus ENSAMXG00000006895 I 0.602
ENSAMXG00000009358 Astyanax mexicanus ENSAMXG00000009358 I 0.602
ENSAMXG00000024684 Astyanax mexicanus ENSAMXG00000024684 I 0.602
ENSP00000243103-D1 Bos grunniens ENSP00000243103-D1 I 0.602
HOXC12 Bos taurus ENSBTAG00000000924 I 0.602
BOTBODRAFT_214576 Botryobasidium botryosum BOTBODRAFT_214576 I 0.631
Brh_R005179 Buceros rhinoceros Brh_R005179 I 0.602
HOXC12 Callithrix jacchus ENSCJAG00000018806 I 0.602
Aan_R014659 Calypte anna Aan_R014659 I 0.602
HOXC12 Canis familiaris ENSCAFG00000006645 I 0.602
HOXC12 Cavia porcellus ENSCPOG00000026314 I 0.602
ENSCSAG00000005459 Chlorocebus sabaeus ENSCSAG00000005459 I 0.602
CC1G_01962 Coprinopsis cinerea CC1G_01962 I 0.679
hoxd12a Danio rerio ENSDARG00000059263 I 0.602
hoxc12a Danio rerio ENSDARG00000070352 I 0.602
hoxc12b Danio rerio ENSDARG00000103133 I 0.602
hbx10 Dictyostelium discoideum DDB_G0284293 D 0.601
warA Dictyostelium discoideum DDB_G0291075 I 0.697
estExt_fgeneshDP_pg.C_350041 Dictyostelium purpureum estExt_fgeneshDP_pg.C_350041 I 0.697
GID1.0049906 Dictyostelium purpureum GID1.0049906 I 0.601
CAD26261 Encephalitozoon cuniculi CAD26261 D 0.680
EHEL_031090 Encephalitozoon hellem EHEL_031090 I 0.680
Eint_031070 Encephalitozoon intestinalis Eint_031070 I 0.668
EROM_031050 Encephalitozoon romaleae EROM_031050 I 0.680
HOXC12 Equus caballus ENSECAG00000024893 I 0.602
HOXC12 Felis catus ENSFCAG00000023389 I 0.602
FOMPIDRAFT_1128018 Fomitopsis pinicola FOMPIDRAFT_1128018 I 0.603
ENSGMOG00000004313 Gadus morhua ENSGMOG00000004313 I 0.602
GALMADRAFT_211191 Galerina marginata GALMADRAFT_211191 I 0.679
ENSGALG00000026393 Gallus gallus ENSGALG00000026393 I 0.602
hoxd12a Gasterosteus aculeatus ENSGACG00000004574 I 0.602
HOXC12 Gorilla gorilla ENSGGOG00000023684 I 0.602
M413DRAFT_413744 Hebeloma cylindrosporum M413DRAFT_413744 I 0.667
HOXC12 Homo sapiens ENSG00000123407 D 0.602
ENSSTOG00000019478 Ictidomys tridecemlineatus ENSSTOG00000019478 I 0.602
JAAARDRAFT_47621 Jaapia argillacea JAAARDRAFT_47621 I 0.680
KNAG_0A05600 Kazachstania naganishii KNAG_0A05600 I 0.681
K443DRAFT_127593 Laccaria amethystina K443DRAFT_127593 I 0.679
LACBIDRAFT_293988 Laccaria bicolor LACBIDRAFT_293988 I 0.679
ENSLACG00000016761 Latimeria chalumnae ENSLACG00000016761 I 0.602
ENSLOCG00000006304 Lepisosteus oculatus ENSLOCG00000006304 I 0.602
HOXC12 Loxodonta africana ENSLAFG00000024750 I 0.602
ENSP00000243103 Macaca fascicularis ENSP00000243103 I 0.602
HOXC12 Macaca mulatta ENSMMUG00000004541 I 0.602
MVLG_00113 Microbotryum violaceum MVLG_00113 I 0.744
HOXC12 Microcebus murinus ENSMICG00000011709 I 0.602
E5Q_01806 Mixia osmundae E5Q_01806 I 0.792
Moror_6758 Moniliophthora roreri Moror_6758 I 0.679
fgeneshMC_pg.1_#_125 Mucor circinelloides fgeneshMC_pg.1_#_125 I 0.774
fgeneshMC_pg.1_#_1591 Mucor circinelloides fgeneshMC_pg.1_#_1591 I 0.662
fgeneshMC_pg.1_#_69 Mucor circinelloides fgeneshMC_pg.1_#_69 I 0.730
fgeneshMC_pg.4_#_986 Mucor circinelloides fgeneshMC_pg.4_#_986 I 0.661
ENSMPUG00000005886 Mustela putorius furo ENSMPUG00000005886 I 0.602
Hoxc12 Mus musculus ENSMUSG00000050328 D 0.602
HOXC12 Myotis lucifugus ENSMLUG00000026984 I 0.602
NCAS_0B05980 Naumovozyma castellii NCAS_0B05980 I 0.652
NDAI_0B03290 Naumovozyma dairenensis NDAI_0B03290 I 0.647
NEPG_01845 Nematocida parisii ertm1 NEPG_01845 I 0.673
NERG_00880 Nematocida sp NERG_00880 I 0.673
NEMVEDRAFT_v1g105595 Nematostella vectensis NEMVEDRAFT_v1g105595 D 0.676
ENSNLEG00000017683 Nomascus leucogenys ENSNLEG00000017683 I 0.602
NAPIS_ORF00184 Nosema apis NAPIS_ORF00184 I 0.694
NAPIS_ORF00325 Nosema apis NAPIS_ORF00325 I 0.696
NBO_11g0012 Nosema bombycis NBO_11g0012 I 0.672
NBO_6g0031 Nosema bombycis NBO_6g0031 I 0.714
NBO_85g0005 Nosema bombycis NBO_85g0005 I 0.672
NCER_100211 Nosema ceranae NCER_100211 I 0.695
NCER_100315 Nosema ceranae NCER_100315 I 0.696
Ogr02756 Ophisaurus gracilis Ogr02756 I 0.602
M896_030550 Ordospora colligata M896_030550 I 0.680
ENSONIG00000008617 Oreochromis niloticus ENSONIG00000008617 I 0.602
ENSONIG00000012233 Oreochromis niloticus ENSONIG00000012233 I 0.602
ENSOANG00000015091 Ornithorhynchus anatinus ENSOANG00000015091 I 0.602
HOXC12 Oryctolagus cuniculus ENSOCUG00000001157 I 0.602
hoxc12a Oryzias latipes ENSORLG00000007902 I 0.602
hoxd12a Oryzias latipes ENSORLG00000017536 I 0.602
HOXC12 Otolemur garnettii ENSOGAG00000025383 I 0.602
ENSOARG00000016352 Ovis aries ENSOARG00000016352 I 0.602
HOXC12 Pan troglodytes ENSPTRG00000005026 I 0.602
ENSPANG00000010379 Papio anubis ENSPANG00000010379 I 0.602
PAXRUDRAFT_10369 Paxillus rubicundulus PAXRUDRAFT_10369 I 0.679
ENSPSIG00000004903 Pelodiscus sinensis ENSPSIG00000004903 I 0.602
PHACADRAFT_257545 Phanerochaete carnosa PHACADRAFT_257545 I 0.661
fgenesh1_pg.C_scaffold_15000074 Phanerochaete chrysosporium fgenesh1_pg.C_scaffold_15000074 I 0.659
PHLGIDRAFT_55548 Phlebiopsis gigantea PHLGIDRAFT_55548 I 0.661
fgeneshPB_pg.18__155 Phycomyces blakesleeanus fgeneshPB_pg.18__155 I 0.657
fgeneshPB_pg.6__195 Phycomyces blakesleeanus fgeneshPB_pg.6__195 I 0.710
PIIN_02203 Piriformospora indica PIIN_02203 I 0.679
PLEOSDRAFT_173849 Pleurotus ostreatus PLEOSDRAFT_173849 I 0.683
ENSPFOG00000002075 Poecilia formosa ENSPFOG00000002075 I 0.602
ENSPFOG00000013995 Poecilia formosa ENSPFOG00000013995 I 0.602
EFA78939.1 Polysphondylium pallidum EFA78939.1 I 0.601
EFA86584.1 Polysphondylium pallidum EFA86584.1 I 0.698
ENSPPYG00000004589 Pongo abelii ENSPPYG00000004589 I 0.602
POSPLDRAFT_98870 Postia placenta POSPLDRAFT_98870 I 0.663
HOXC12 Pteropus vampyrus ENSPVAG00000012297 I 0.602
PGTG_00338 Puccinia graminis PGTG_00338 I 0.812
PTTG_07330 Puccinia triticina PTTG_07330 I 0.812
Hoxc12 Rattus norvegicus ENSRNOG00000016116 I 0.602
GLOINDRAFT_21145 Rhizophagus irregularis GLOINDRAFT_21145 I 0.723
RO3G_02291 Rhizopus oryzae RO3G_02291 I 0.781
RO3G_03200 Rhizopus oryzae RO3G_03200 I 0.634
RO3G_08777 Rhizopus oryzae RO3G_08777 I 0.642
Scas_Contig613.11 Saccharomyces castellii Scas_Contig613.11 I 0.652
M408DRAFT_258951 Serendipita vermifera M408DRAFT_258951 I 0.679
SERLA73DRAFT_72643 Serpula lacrymans SERLA73DRAFT_72643 I 0.679
SPPG_05107 Spizellomyces punctatus SPPG_05107 I 0.759
SPU_011798 Strongylocentrotus purpuratus SPU_011798 I 0.602
CY34DRAFT_106181 Suillus luteus CY34DRAFT_106181 I 0.667
CY34DRAFT_109842 Suillus luteus CY34DRAFT_109842 I 0.616
HOXC12 Sus scrofa ENSSSCG00000000281 I 0.602
hoxc12a Takifugu rubripes ENSTRUG00000004280 I 0.602
hoxd12a Takifugu rubripes ENSTRUG00000017534 I 0.602
hoxc12a Tetraodon nigroviridis ENSTNIG00000001773 I 0.602
hoxd12a Tetraodon nigroviridis ENSTNIG00000001777 I 0.602
THOM_0497 Trachipleistophora hominis THOM_0497 I 0.680
M407DRAFT_11655 Tulasnella calospora M407DRAFT_11655 I 0.688
M407DRAFT_4599 Tulasnella calospora M407DRAFT_4599 I 0.671
HOXC12 Tursiops truncatus ENSTTRG00000004543 I 0.602
Tal_R008153 Tyto alba Tal_R008153 I 0.602
VCUG_00708 Vavraia culicis VCUG_00708 I 0.680
J056_004115 Wallemia ichthyophaga J056_004115 I 0.643
WALSEDRAFT_59197 Wallemia sebi WALSEDRAFT_59197 I 0.648
hoxc12 Xenopus tropicalis XB-GENE-853677 I 0.602
ENSXMAG00000000425 Xiphophorus maculatus ENSXMAG00000000425 I 0.602
YALI0_F16852g Yarrowia lipolytica YALI0_F16852g I 0.650