Afo_R008451 (Aptenodytes forsteri)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Afo_R008451 T225108_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VSX1
M03087_2.00 		Homo sapiens
YTAATTAN
NTAATTAR		 SELEX
Jolma et al.(2013)
VSX1_1 		0.757 0.535
VSX1
M03088_2.00 		Homo sapiens
NNYAATTRRBN
NVYYAATTRNN		 SELEX
Jolma et al.(2013)
VSX1_2 		0.757 0.535
VSX1
M04941_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_HT-SELEX 		0.757 0.535
VSX1
M04944_2.00 		Homo sapiens
NTAATTRS
SYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_HT-SELEX 		0.757 0.535
VSX1
M05869_2.00 		Homo sapiens
DGCTAATTAN
NTAATTAGCH		 SMiLE-seq
Isakova et al.(2017)
VSX1 		0.757 0.535
VSX1
M04942_2.00 		Homo sapiens
NTAAYGMN
NKCRTTAN		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_1 		0.757 0.535
VSX1
M04943_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_2 		0.757 0.535
VSX1
M04945_2.00 		Homo sapiens
NTAATTRG
CYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_1 		0.757 0.535
VSX1
M04946_2.00 		Homo sapiens
NTAAYGAN
NTCRTTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_2 		0.757 0.535
VAX1
M03168_2.00 		Homo sapiens
YTAATKAN
NTMATTAR		 SELEX
Jolma et al.(2013)
VAX1_1 		0.740 0.419
VAX1
M05182_2.00 		Homo sapiens
BTAATTRN
NYAATTAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_HT-SELEX 		0.740 0.419
VAX1
M05183_2.00 		Homo sapiens
BTMATKRN
NYMATKAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_Methyl-HT-SELEX 		0.740 0.419
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Afo_R008451 Homeodomain 20 62

Links

Other Homeodomain family TFs
Other Aptenodytes forsteri TFs

1243 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMAM003654 Anopheles maculatus AMAM003654 I 0.630
AMIN005749 Anopheles minimus AMIN005749 I 0.673
Bra020321 Brassica rapa Bra020321 N 0.000
Bra034855 Brassica rapa Bra034855 N 0.000
Bra002576 Brassica rapa Bra002576 N 0.000
PK01458.1 Cannabis sativa PK01458.1 N 0.000
Ca_12504 Cicer arietinum Ca_12504 N 0.000
Cucsa.213810 Cucumis sativus Cucsa.213810 N 0.000
ENSMEUG00000001401 Macropus eugenii ENSMEUG00000001401 N 0.000
MDP0000874562 Malus domestica MDP0000874562 N 0.000
MDP0000250248 Malus domestica MDP0000250248 N 0.000
MCINX001506 Melitaea cinxia MCINX001506 I 0.684
ENSMICG00000002512 Microcebus murinus ENSMICG00000002512 I 0.676
OBART08G07280 Oryza barthii OBART08G07280 N 0.000
OB05G33420 Oryza brachyantha OB05G33420 N 0.000
OLONG_015615 Oryza longistaminata OLONG_015615 N 0.000
OMERI03G30000 Oryza meridionalis OMERI03G30000 N 0.000
ONIVA03G16810 Oryza nivara ONIVA03G16810 N 0.000
ORUFI07G17770 Oryza rufipogon ORUFI07G17770 N 0.000
PEQ_0000511901 Parascaris equorum PEQ_0000511901 I 0.655
ENSPSIG00000008536 Pelodiscus sinensis ENSPSIG00000008536 I 0.641
30202.m000250 Ricinus communis 30202.m000250 I 0.000
O9G_004201 Rozella allomycis O9G_004201 N 0.000
Traes_1AL_489411063 Triticum aestivum Traes_1AL_489411063 N 0.000
TRIUR3_03990 Triticum urartu TRIUR3_03990 N 0.000
GRMZM2G419252 Zea mays GRMZM2G419252 N 0.000