cassava41616.m1 (Manihot esculenta)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 cassava41616.m1 T227132_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
KNAT7
M01064_2.00 		Arabidopsis thaliana
TGACRKST
ASMYGTCA		 PBM
Sullivan et al.(2014)
pTH9798 		0.702 0.645
KNAT4
M01238_2.00 		Arabidopsis thaliana
NNGACNNNN
NNNNGTCNN		 PBM
Lambert et al.(2019)
pTH9968 		0.698 0.645
KNAT3
M02051_2.00 		Arabidopsis thaliana
NNNGACVBNN
NNVBGTCNNN		 PBM
Weirauch et al.(2014)
pTH7600 		0.698 0.645
HOS66
M02156_2.00 		Oryza sativa
NNNNDHNN
NNDHNNNN		 PBM
Weirauch et al.(2014)
pTH8332 		0.685 0.645
MEIS3
M03093_2.00 		Homo sapiens
DTGACANN
NNTGTCAH		 SELEX
Jolma et al.(2013)
MEIS3_1 		0.675 0.516
MEIS3
M03094_2.00 		Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Jolma et al.(2013)
MEIS3_2 		0.675 0.516
MEIS3
M04951_2.00 		Homo sapiens
TGWCABVTGWCA
TGWCABVTGWCA		 SELEX
Yin et al.(2017)
MEIS3_eDBD_HT-SELEX 		0.675 0.516
MEIS3
M04952_2.00 		Homo sapiens
YGWCABVTGWCR
YGWCABVTGWCR		 SELEX
Yin et al.(2017)
MEIS3_eDBD_Methyl-HT-SELEX 		0.675 0.516
PK25034.1
M01254_2.00 		Cannabis sativa
NNTGACRKBN
NVMYGTCANN		 PBM
Lambert et al.(2019)
pTH11259 		0.619 0.839
Q5EVH4_OIKDI
M02227_2.00 		Oikopleura dioica
NTGACAKN
NMTGTCAN		 PBM
Weirauch et al.(2014)
pTH6041 		0.613 0.484
ATH1
M10627_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATH1_01 		0.606 0.516
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava41616.m1 Homeodomain 1 31

Links

Other Homeodomain family TFs
Other Manihot esculenta TFs

1235 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GF14523 Drosophila ananassae FBgn0091550 I 0.000
GG24206 Drosophila erecta FBgn0116338 I 0.000
GH13116 Drosophila grimshawi FBgn0120593 I 0.000
sna Drosophila melanogaster FBgn0003448 D 0.000
GI22640 Drosophila mojavensis FBgn0145368 I 0.000
GL26593 Drosophila persimilis FBgn0164175 I 0.000
GA17803 Drosophila pseudoobscura FBgn0077812 I 0.000
GM14336 Drosophila sechellia FBgn0169261 I 0.000
GD21953 Drosophila simulans FBgn0193368 I 0.000
GJ23192 Drosophila virilis FBgn0210294 I 0.000
GK18251 Drosophila willistoni FBgn0220250 I 0.000
GE19401 Drosophila yakuba FBgn0236744 I 0.000
LCUP006861 Lucilia cuprina LCUP006861 I 0.000
MDOA012986 Musca domestica MDOA012986 I 0.000