cassava42275.valid.m1 (Manihot esculenta)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 cassava42275.valid.m1 T227134_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATH1
M10627_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATH1_01 		0.826 0.681
Q5EVH4_OIKDI
M02227_2.00 		Oikopleura dioica
NTGACAKN
NMTGTCAN		 PBM
Weirauch et al.(2014)
pTH6041 		0.638 0.574
MEIS3
M03093_2.00 		Homo sapiens
DTGACANN
NNTGTCAH		 SELEX
Jolma et al.(2013)
MEIS3_1 		0.606 0.426
MEIS3
M03094_2.00 		Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Jolma et al.(2013)
MEIS3_2 		0.606 0.426
MEIS3
M04951_2.00 		Homo sapiens
TGWCABVTGWCA
TGWCABVTGWCA		 SELEX
Yin et al.(2017)
MEIS3_eDBD_HT-SELEX 		0.606 0.426
MEIS3
M04952_2.00 		Homo sapiens
YGWCABVTGWCR
YGWCABVTGWCR		 SELEX
Yin et al.(2017)
MEIS3_eDBD_Methyl-HT-SELEX 		0.606 0.426
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava42275.valid.m1 Homeodomain 421 470

Links

Other Homeodomain family TFs
Other Manihot esculenta TFs

1006 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL014006 Aedes aegypti AAEL014006 I
AARA006439 Anopheles arabiensis AARA006439 I
AATE009845 Anopheles atroparvus AATE009845 I
ACHR005179 Anopheles christyi ACHR005179 I
ACOM029598 Anopheles coluzzii ACOM029598 I
ACUA019554 Anopheles culicifacies ACUA019554 I
ADAC010229 Anopheles darlingi ADAC010229 I
AEPI006519 Anopheles epiroticus AEPI006519 I
AFAF011359 Anopheles farauti AFAF011359 I
AFUN004445 Anopheles funestus AFUN004445 I
AGAP004517 Anopheles gambiae AGAP004517 I
AMEC013971 Anopheles melas AMEC013971 I
AMIN004891 Anopheles minimus AMIN004891 I
AQUA009647 Anopheles quadriannulatus AQUA009647 I
ASIS018018 Anopheles sinensis ASIS018018 I
ASTEI04844 Anopheles stephensi ASTEI04844 I
BGIBMGA002238 Bombyx mori BGIBMGA002238 I
CLEC005464 Cimex lectularius CLEC005464 I
CpipJ_CPIJ008311 Culex pipiens CpipJ_CPIJ008311 I
CPIJ008311 Culex quinquefasciatus CPIJ008311 I
KGM_06603 Danaus plexippus KGM_06603 I
DAPPUDRAFT_331337 Daphnia pulex DAPPUDRAFT_331337 I
GF16814 Drosophila ananassae FBgn0093835 I
GG11643 Drosophila erecta FBgn0103940 I
GH18734 Drosophila grimshawi FBgn0126201 I
hkb Drosophila melanogaster FBgn0261434 D
GI22886 Drosophila mojavensis FBgn0145613 I
GL12325 Drosophila persimilis FBgn0149932 I
GA22020 Drosophila pseudoobscura FBgn0082005 I
GM10707 Drosophila sechellia FBgn0165653 I
GD19684 Drosophila simulans FBgn0191175 I
GJ14181 Drosophila virilis FBgn0201398 I
GK13762 Drosophila willistoni FBgn0215770 I
GE25358 Drosophila yakuba FBgn0242436 I
HMEL016959 Heliconius melpomene HMEL016959 I
LDEC017422 Leptinotarsa decemlineata LDEC017422 I
LCUP000702 Lucilia cuprina LCUP000702 I
MCINX014717 Melitaea cinxia MCINX014717 I
MDOA010102 Musca domestica MDOA010102 I
PHUM127400 Pediculus humanus PHUM127400 I
PPAI000954 Phlebotomus papatasi PPAI000954 I
SMAR000785 Strigamia maritima SMAR000785 I
tetur02g06440 Tetranychus urticae tetur02g06440 I
tetur02g06400 Tetranychus urticae tetur02g06400 I
TC010992 Tribolium castaneum TC010992 I