Bostr.19427s0048 (Boechera stricta)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Bostr.19427s0048 T228107_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HAT22
M06926_2.00 		Arabidopsis thaliana
NNYAATCATT
AATGATTRNN		 Dap-seq
OMalley et al.(2016)
HAT22_col_a 		0.862 0.877
HAT2
M06929_2.00 		Arabidopsis thaliana
NHAATGATTRN
NYAATCATTDN		 Dap-seq
OMalley et al.(2016)
HAT2_colamp_a 		0.793 0.772
HAT2
M06930_2.00 		Arabidopsis thaliana
WNYAATCATWD
HWATGATTRNW		 Dap-seq
OMalley et al.(2016)
HAT2_col_v31 		0.793 0.772
HAT1
M02047_2.00 		Arabidopsis thaliana
NMATGATTRN
NYAATCATKN		 PBM
Weirauch et al.(2014)
pTH8107 		0.792 0.737
HAT1
M06922_2.00 		Arabidopsis thaliana
NHAATGATTRNNWDW
WHWNNYAATCATTDN		 Dap-seq
OMalley et al.(2016)
HAT1_col_a 		0.792 0.737
HAT1
M06923_2.00 		Arabidopsis thaliana
NYAATCATTDN
NHAATGATTRN		 Dap-seq
OMalley et al.(2016)
HAT1_colamp_a 		0.792 0.737
ATHB-X
M06902_2.00 		Arabidopsis thaliana
HHAATRATTRN
NYAATYATTDD		 Dap-seq
OMalley et al.(2016)
ATHB18_col_a 		0.773 0.754
ATHB-X
M06903_2.00 		Arabidopsis thaliana
NYAATGATTRV
BYAATCATTRN		 Dap-seq
OMalley et al.(2016)
ATHB18_colamp_a 		0.773 0.754
HAT3
M00728_2.00 		Arabidopsis thaliana
DTGATTRV
BYAATCAH		 PBM
Chang et al.(2013)
pTH7400 		0.764 0.789
ATHB-4
M01065_2.00 		Arabidopsis thaliana
NBMTGCATRNN
NNYATGCAKVN		 PBM
Sullivan et al.(2014)
pTH8184 		0.764 0.772
ATHB-4
M02042_2.00 		Arabidopsis thaliana
NNWTNATTRN
NYAATNAWNN		 PBM
Weirauch et al.(2014)
pTH8667 		0.764 0.772
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bostr.19427s0048.1.p Homeodomain 111 167

Links

Other Homeodomain family TFs
Other Boechera stricta TFs

695 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ADIR004612 Anopheles dirus ADIR004612 N
AEPI000661 Anopheles epiroticus AEPI000661 N
ASIS006297 Anopheles sinensis ASIS006297 N
ACEP15315 Atta cephalotes ACEP15315 N
CRE03357 Caenorhabditis remanei CRE03357 N
DILT_0001312701 Diphyllobothrium latum DILT_0001312701 N
ECPE_0000273401 Echinostoma caproni ECPE_0000273401 N
HelroG172434 Helobdella robusta HelroG172434 N
LOAG_09072 Loa loa LOAG_09072 N
MDOA004921 Musca domestica MDOA004921 N
estExt_fgeneshHS_pg.C_370078 Naegleria gruberi estExt_fgeneshHS_pg.C_370078 N
nOo.2.0.1.g06577 Onchocerca ochengi nOo.2.0.1.g06577 N
PEQ_0000587201 Parascaris equorum PEQ_0000587201 N
ENSPCAG00000014663 Procavia capensis ENSPCAG00000014663 N
PXEA_0001865101 Protopolystoma xenopodis PXEA_0001865101 N
PXEA_0002437401 Protopolystoma xenopodis PXEA_0002437401 N
SSLN_0001114201 Schistocephalus solidus SSLN_0001114201 N
Sjc_0082940 Schistosoma japonicum Sjc_0082940 N
SMU15026520 Schmidtea mediterranea SMU15026520 N
SPER_0000032601 Spirometra erinaceieuropaei SPER_0000032601 N
SPER_0001686401 Spirometra erinaceieuropaei SPER_0001686401 N
fgenesh4_pg.C_scaffold_33000057 Volvox carteri fgenesh4_pg.C_scaffold_33000057 N
pax6.L Xenopus laevis XB-GENE-865046 I