gene20925-v1.0-hybrid (Fragaria vesca)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 gene20925-v1.0-hybrid T228625_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
WUS
M06905_2.00 		Arabidopsis thaliana
TRAWTGAWTGA
TCAWTCAWTYA		 Dap-seq
OMalley et al.(2016)
WUS1_col_a 		0.673 0.667
WUS
M06906_2.00 		Arabidopsis thaliana
TGAWTGAWTGW
WCAWTCAWTCA		 Dap-seq
OMalley et al.(2016)
WUS1_colamp_a 		0.673 0.667
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna20925.1-v1.0-hybrid Homeodomain 29 90

Links

Other Homeodomain family TFs
Other Fragaria vesca TFs

440 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00102p00056000 Amborella trichopoda AMTR_s00102p00056000 N 0.000
AMTR_s00102p00046460 Amborella trichopoda AMTR_s00102p00046460 N 0.000
Aquca_019_00196 Aquilegia coerulea Aquca_019_00196 N 0.000
FIT1 Arabidopsis lyrata fgenesh2_kg.4__753__AT2G28160.1 N 0.000
FIT Arabidopsis thaliana AT2G28160 N 0.000
Bostr.27991s0112 Boechera stricta Bostr.27991s0112 N 0.000
BRADI5G07720 Brachypodium distachyon BRADI5G07720 N 0.000
Bo3g040310 Brassica oleracea Bo3g040310 N 0.000
Bo4g071850 Brassica oleracea Bo4g071850 N 0.000
Bo4g165090 Brassica oleracea Bo4g165090 N 0.000
Bra000495 Brassica rapa Bra000495 N 0.000
Bra011972 Brassica rapa Bra011972 N 0.000
Bra034392 Brassica rapa Bra034392 N 0.000
PK27980.1 Cannabis sativa PK27980.1 N 0.000
PK26582.1 Cannabis sativa PK26582.1 N 0.000
Cagra.12562s0002 Capsella grandiflora Cagra.12562s0002 N 0.000
Carubv10023654m.g Capsella rubella Carubv10023654m.g N 0.000
Ca_17453 Cicer arietinum Ca_17453 N 0.000
Cla008847 Citrullus lanatus Cla008847 N 0.000
Ciclev10003738m.g Citrus clementina Ciclev10003738m.g N 0.000
Ciclev10029810m.g Citrus clementina Ciclev10029810m.g N 0.000
Ciclev10030052m.g Citrus clementina Ciclev10030052m.g N 0.000
orange1.1g021355m.g Citrus sinensis orange1.1g021355m.g N 0.000
orange1.1g042465m.g Citrus sinensis orange1.1g042465m.g N 0.000
Cucsa.385700 Cucumis sativus Cucsa.385700 N 0.000
Eucgr.B03931 Eucalyptus grandis Eucgr.B03931 N 0.000
Thhalv10016957m.g Eutrema salsugineum Thhalv10016957m.g N 0.000
gene24608-v1.0-hybrid Fragaria vesca gene24608-v1.0-hybrid N 0.000
gene24607-v1.0-hybrid Fragaria vesca gene24607-v1.0-hybrid N 0.000
GLYMA11G19850 Glycine max GLYMA11G19850 N 0.000
GLYMA13G39650 Glycine max GLYMA13G39650 N 0.000
GLYMA12G08640 Glycine max GLYMA12G08640 N 0.000
GLYMA12G30240 Glycine max GLYMA12G30240 N 0.000
Gorai.009G090400 Gossypium raimondii Gorai.009G090400 N 0.000
MLOC_6707 Hordeum vulgare MLOC_6707 N 0.000
LPERR04G07210 Leersia perrieri LPERR04G07210 N 0.000
Lus10016151.g Linum usitatissimum Lus10016151.g N 0.000
chr3.CM0396.580.nc Lotus japonicus chr3.CM0396.580.nc N 0.000
chr3.CM0070.320.nc Lotus japonicus chr3.CM0070.320.nc N 0.000
MDP0000421809 Malus domestica MDP0000421809 N 0.000
cassava28523.m1 Manihot esculenta cassava28523.m1 N 0.000
MTR_4g057270 Medicago truncatula MTR_4g057270 N 0.000
MTR_2g084280 Medicago truncatula MTR_2g084280 N 0.000
mgf022253m Mimulus guttatus mgf022253m N 0.000
mgf025442m Mimulus guttatus mgf025442m N 0.000
GSMUA_Achr6G27600_001 Musa acuminata GSMUA_Achr6G27600_001 N 0.000
OBART04G10120 Oryza barthii OBART04G10120 N 0.000
OB04G17410 Oryza brachyantha OB04G17410 N 0.000
ORGLA04G0072000 Oryza glaberrima ORGLA04G0072000 N 0.000
ORGLA02G0343900 Oryza glaberrima ORGLA02G0343900 N 0.000
OGLUM04G09730 Oryza glumaepatula OGLUM04G09730 N 0.000
OLONG_016577 Oryza longistaminata OLONG_016577 N 0.000
ONIVA04G07960 Oryza nivara ONIVA04G07960 N 0.000
OPUNC04G08160 Oryza punctata OPUNC04G08160 N 0.000
ORUFI04G11150 Oryza rufipogon ORUFI04G11150 N 0.000
OS04G0381700 Oryza sativa OS04G0381700 N 0.000
Pavir.Ga01979 Panicum virgatum Pavir.Ga01979 N 0.000
Pavir.J28741 Panicum virgatum Pavir.J28741 N 0.000
Pavir.J29678 Panicum virgatum Pavir.J29678 N 0.000
PDK_20s1479721g001 Phoenix dactylifera PDK_20s1479721g001 N 0.000
FIT1 Populus trichocarpa POPTR_0009s01100 N 0.000
Pm001154 Prunus mume Pm001154 N 0.000
PRUPE_ppa018718mg Prunus persica PRUPE_ppa018718mg N 0.000
SapurV1A.1382s0060 Salix purpurea SapurV1A.1382s0060 N 0.000
Si010533m.g Setaria italica Si010533m.g N 0.000
Si010468m.g Setaria italica Si010468m.g N 0.000
Solyc06g051550.2 Solanum lycopersicum Solyc06g051550.2 N 0.000
PGSC0003DMG400019017 Solanum tuberosum PGSC0003DMG400019017 N 0.000
Sb06g012030 Sorghum bicolor Sb06g012030 N 0.000
TCM_041590 Theobroma cacao TCM_041590 N 0.000
Traes_2DL_47E8C44C6 Triticum aestivum Traes_2DL_47E8C44C6 N 0.000
Traes_2BL_F442E87DD Triticum aestivum Traes_2BL_F442E87DD N 0.000
Traes_2AL_088338613 Triticum aestivum Traes_2AL_088338613 N 0.000
FIT1 Vitis vinifera VIT_06s0061g00720 N 0.000
GRMZM2G173521 Zea mays GRMZM2G173521 N 0.000
GRMZM2G107672 Zea mays GRMZM2G107672 N 0.000