gene28834-v1.0-hybrid (Fragaria vesca)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 gene28834-v1.0-hybrid T228640_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATH1
M10627_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATH1_01 		0.810 0.652
Q5EVH4_OIKDI
M02227_2.00 		Oikopleura dioica
NTGACAKN
NMTGTCAN		 PBM
Weirauch et al.(2014)
pTH6041 		0.626 0.565
MEIS3
M03093_2.00 		Homo sapiens
DTGACANN
NNTGTCAH		 SELEX
Jolma et al.(2013)
MEIS3_1 		0.618 0.435
MEIS3
M03094_2.00 		Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Jolma et al.(2013)
MEIS3_2 		0.618 0.435
MEIS3
M04951_2.00 		Homo sapiens
TGWCABVTGWCA
TGWCABVTGWCA		 SELEX
Yin et al.(2017)
MEIS3_eDBD_HT-SELEX 		0.618 0.435
MEIS3
M04952_2.00 		Homo sapiens
YGWCABVTGWCR
YGWCABVTGWCR		 SELEX
Yin et al.(2017)
MEIS3_eDBD_Methyl-HT-SELEX 		0.618 0.435
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna28834.1-v1.0-hybrid Homeodomain 113 161

Links

Other Homeodomain family TFs
Other Fragaria vesca TFs

1010 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ASIM_0001132301 Anisakis simplex ASIM_0001132301 N 0.000
ASIS002444 Anopheles sinensis ASIS002444 N 0.000
CLEC004367 Cimex lectularius CLEC004367 N 0.000
CC1G_07855 Coprinopsis cinerea CC1G_07855 N 0.000
GH16346 Drosophila grimshawi FBgn0123817 N 0.000
estExt_Genewise1.C_120062 Heterobasidion annosum estExt_Genewise1.C_120062 N 0.000
HETIRDRAFT_460226 Heterobasidion irregulare HETIRDRAFT_460226 N 0.000
JAAARDRAFT_460099 Jaapia argillacea JAAARDRAFT_460099 N 0.000
SAKL0D09922g Lachancea kluyveri SAKL0D09922g N 0.000
SAKL0C10648g Lachancea kluyveri SAKL0C10648g N 0.000
SAKL0C03916g Lachancea kluyveri SAKL0C03916g N 0.000
SAKL0C03872g Lachancea kluyveri SAKL0C03872g N 0.000
LALA0_S01e08702g Lachancea lanzarotensis LALA0_S01e08702g N 0.000
MVLG_01553 Microbotryum violaceum MVLG_01553 N 0.000
MPER_12197 Moniliophthora perniciosa MPER_12197 N 0.000
Moror_8439 Moniliophthora roreri Moror_8439 N 0.000
HPODL_02662 Ogataea parapolymorpha HPODL_02662 N 0.000
GLOINDRAFT_9339 Rhizophagus irregularis GLOINDRAFT_9339 N 0.000
RHTO_04537 Rhodosporidium toruloides RHTO_04537 N 0.000
SINV25043 Solenopsis invicta SINV25043 N 0.000
sr12520 Sporisorium reilianum sr12520 N 0.000
fgenesh1_pg.C_scaffold_11000089 Sporobolomyces roseus fgenesh1_pg.C_scaffold_11000089 N 0.000
TSTA_110260 Talaromyces stipitatus TSTA_110260 N 0.000
A1Q1_02593 Trichosporon asahii A1Q1_02593 N 0.000
UM01457 Ustilago maydis UM01457 N 0.000