MDP0000239235 (Malus domestica)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 MDP0000239235 T229037_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
WUS
M06905_2.00 		Arabidopsis thaliana
TRAWTGAWTGA
TCAWTCAWTYA		 Dap-seq
OMalley et al.(2016)
WUS1_col_a 		0.761 0.750
WUS
M06906_2.00 		Arabidopsis thaliana
TGAWTGAWTGW
WCAWTCAWTCA		 Dap-seq
OMalley et al.(2016)
WUS1_colamp_a 		0.761 0.750
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000239235 Homeodomain 118 178

Links

Other Homeodomain family TFs
Other Malus domestica TFs

442 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_021_00051 Aquilegia coerulea Aquca_021_00051 I 0.000
ANAC083 Arabidopsis lyrata scaffold_601328.1 I 0.000
ANAC041 Arabidopsis lyrata fgenesh2_kg.4__1354__AT2G33480.1 I 0.000
NAC083 Arabidopsis thaliana AT5G13180 D 0.000
NAC041 Arabidopsis thaliana AT2G33480 I 0.000
Bostr.2902s0053 Boechera stricta Bostr.2902s0053 I 0.000
Bostr.23794s0753 Boechera stricta Bostr.23794s0753 I 0.000
Bo4g181990 Brassica oleracea Bo4g181990 I 0.000
Bo4g043670 Brassica oleracea Bo4g043670 I 0.000
Bra021856 Brassica rapa Bra021856 I 0.000
Bra005492 Brassica rapa Bra005492 I 0.000
PK12461.1 Cannabis sativa PK12461.1 I 0.000
Cagra.0596s0010 Capsella grandiflora Cagra.0596s0010 I 0.000
Cagra.0301s0034 Capsella grandiflora Cagra.0301s0034 N 0.000
Carubv10023833m.g Capsella rubella Carubv10023833m.g N 0.000
Carubv10002548m.g Capsella rubella Carubv10002548m.g I 0.000
Cla001517 Citrullus lanatus Cla001517 I 0.000
Ciclev10032547m.g Citrus clementina Ciclev10032547m.g I 0.000
orange1.1g030727m.g Citrus sinensis orange1.1g030727m.g I 0.000
Cucsa.349370 Cucumis sativus Cucsa.349370 I 0.000
Eucgr.H03387 Eucalyptus grandis Eucgr.H03387 I 0.000
Eucgr.B03537 Eucalyptus grandis Eucgr.B03537 I 0.000
Thhalv10017152m.g Eutrema salsugineum Thhalv10017152m.g I 0.000
GLYMA18G53954 Glycine max GLYMA18G53954 I 0.000
GLYMA08G47520 Glycine max GLYMA08G47520 I 0.000
Gorai.005G195300 Gossypium raimondii Gorai.005G195300 I 0.000
Gorai.012G125500 Gossypium raimondii Gorai.012G125500 I 0.000
Lus10001809.g Linum usitatissimum Lus10001809.g I 0.000
Lus10002581.g Linum usitatissimum Lus10002581.g I 0.000
chr1.CM0017.80.nc Lotus japonicus chr1.CM0017.80.nc I 0.000
MDP0000126517 Malus domestica MDP0000126517 I 0.000
MDP0000130123 Malus domestica MDP0000130123 I 0.000
MDP0000147080 Malus domestica MDP0000147080 I 0.000
cassava12891.valid.m1 Manihot esculenta cassava12891.valid.m1 I 0.000
cassava1138.valid.m1 Manihot esculenta cassava1138.valid.m1 I 0.000
MTR_7g005280 Medicago truncatula MTR_7g005280 I 0.000
POPTR_0003s16490 Populus trichocarpa POPTR_0003s16490 I 0.000
POPTR_0001s13380 Populus trichocarpa POPTR_0001s13380 I 0.000
Pm007070 Prunus mume Pm007070 I 0.000
PRUPE_ppa010222mg Prunus persica PRUPE_ppa010222mg I 0.000
30128.m009035 Ricinus communis 30128.m009035 I 0.000
SapurV1A.0173s0020 Salix purpurea SapurV1A.0173s0020 I 0.000
SapurV1A.0453s0210 Salix purpurea SapurV1A.0453s0210 I 0.000
TCM_008477 Theobroma cacao TCM_008477 I 0.000
ANAC083 Vitis vinifera VIT_01s0146g00280 I 0.000