orange1.1g003250m.g (Citrus sinensis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 orange1.1g003250m.g T229135_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-9
M06898_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
PHV_col_a 		0.862 0.946
ATHB-9
M02682_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 SELEX
Mathelier et al.(2014)
MA0573.1 		0.862 0.946
ATHB-9
M10623_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 Transfac
Matys et al.(2006)
P$ATHB9_01 		0.862 0.946
ATHB-15
M00864_2.00 		Arabidopsis thaliana
AATAATTACT
AGTAATTATT		 PBM
Franco-Zorrilla et al.(2014)
ICU4 		0.857 0.911
ATHB-15
M06899_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
ATHB15_col_a 		0.857 0.911
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
orange1.1g003250m Homeodomain 28 87
orange1.1g004544m Homeodomain 28 87

Links

Other Homeodomain family TFs
Other Citrus sinensis TFs

336 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000005407 Ailuropoda melanoleuca ENSAMEG00000005407 I 0.000
ENSAPLG00000002762 Anas platyrhynchos ENSAPLG00000002762 I 0.000
ZBTB20 Anolis carolinensis ENSACAG00000009851 I 0.000
Afo_R013084 Aptenodytes forsteri Afo_R013084 I 0.000
ENSP00000419153-D1 Bos grunniens ENSP00000419153-D1 I 0.000
ZBTB20 Bos taurus ENSBTAG00000011928 I 0.000
Brh_R009865 Buceros rhinoceros Brh_R009865 I 0.000
ZBTB20 Callithrix jacchus ENSCJAG00000009211 I 0.000
Aan_R001234 Calypte anna Aan_R001234 I 0.000
ZBTB20 Canis familiaris ENSCAFG00000010823 I 0.000
ZBTB20 Cavia porcellus ENSCPOG00000021801 I 0.000
Cmyd_10014359 Chelonia mydas Cmyd_10014359 I 0.000
ENSCSAG00000006941 Chlorocebus sabaeus ENSCSAG00000006941 I 0.000
ZBTB20 Dasypus novemcinctus ENSDNOG00000042525 I 0.000
Zbtb20 Dipodomys ordii ENSDORG00000008535 I 0.000
ZBTB20 Equus caballus ENSECAG00000015809 I 0.000
ZBTB20 Erinaceus europaeus ENSEEUG00000005612 I 0.000
ZBTB20 Felis catus ENSFCAG00000022767 I 0.000
ENSFALG00000006027 Ficedula albicollis ENSFALG00000006027 I 0.000
ZBTB20 Gallus gallus ENSGALG00000015094 I 0.000
zbtb20 Gasterosteus aculeatus ENSGACG00000020693 I 0.000
Gfo_R000202 Geospiza fortis Gfo_R000202 I 0.000
ZBTB20 Gorilla gorilla ENSGGOG00000025065 I 0.000
ZBTB20 Homo sapiens ENSG00000181722 D 0.000
ENSSTOG00000001832 Ictidomys tridecemlineatus ENSSTOG00000001832 I 0.000
ZBTB20 Loxodonta africana ENSLAFG00000002752 I 0.000
ENSMMUP00000039977 Macaca fascicularis ENSMMUP00000039977 I 0.000
ZBTB20 Meleagris gallopavo ENSMGAG00000014320 I 0.000
ZBTB20 Microcebus murinus ENSMICG00000008815 I 0.000
ZBTB20 Monodelphis domestica ENSMODG00000018181 I 0.000
ENSMPUG00000000272 Mustela putorius furo ENSMPUG00000000272 I 0.000
Zbtb20 Mus musculus ENSMUSG00000022708 I 0.000
Myotis_brandtii_ZBTB20_10031765 Myotis brandtii Myotis_brandtii_ZBTB20_10031765 I 0.000
ZBTB20 Myotis lucifugus ENSMLUG00000014239 I 0.000
Ogr18740 Ophisaurus gracilis Ogr18740 I 0.000
ZBTB20 Oryctolagus cuniculus ENSOCUG00000004232 I 0.000
ENSORLG00000006797 Oryzias latipes ENSORLG00000006797 I 0.000
ZBTB20 Otolemur garnettii ENSOGAG00000029972 I 0.000
ZBTB20 Pan troglodytes ENSPTRG00000015244 I 0.000
ENSPANG00000015935 Papio anubis ENSPANG00000015935 I 0.000
Pvit_00937 Pogona vitticeps Pvit_00937 I 0.000
ENSPPYG00000013526 Pongo abelii ENSPPYG00000013526 I 0.000
Zbtb20 Rattus norvegicus ENSRNOG00000056716 I 0.000
ENSSHAG00000009719 Sarcophilus harrisii ENSSHAG00000009719 I 0.000
ZBTB20 Sorex araneus ENSSARG00000013404 I 0.000
ZBTB20 Sus scrofa ENSSSCG00000026113 I 0.000
ENSSSCG00000021456 Sus scrofa ENSSSCG00000021456 I 0.000
ZBTB20 Taeniopygia guttata ENSTGUG00000013404 I 0.000
zbtb20 Takifugu rubripes ENSTRUG00000016839 I 0.000
ENSTSYG00000009685 Tarsius syrichta ENSTSYG00000009685 I 0.000
ZBTB20 Tupaia belangeri ENSTBEG00000016630 I 0.000
XP_002939695 Xenopus tropicalis XP_002939695 I 0.000