Pavir.Fb00210 (Panicum virgatum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Pavir.Fb00210 T229266_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATML1
M02048_2.00 		Arabidopsis thaliana
NNHNRHYRNN
NNYRDYNDNN		 PBM
Weirauch et al.(2014)
pTH8203 		0.843 0.912
ATML1
M10626_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ML1_01 		0.843 0.912
PDF2
M06921_2.00 		Arabidopsis thaliana
WNVGAATATTCYHTN
NADRGAATATTCBNW		 Dap-seq
OMalley et al.(2016)
PDF2_col 		0.831 0.895
PDF2
M10625_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PDF2_01 		0.831 0.895
HDG1
M06917_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
HDG1_col100_a 		0.824 0.737
HDG1
M06918_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
HDG1_colamp_a 		0.824 0.737
PK24181.1
M01252_2.00 		Cannabis sativa
NNNNNNNHDH
DHDNNNNNNN		 PBM
Lambert et al.(2019)
pTH11300 		0.821 0.772
ANL2
M02046_2.00 		Arabidopsis thaliana
NCATTWATKNN
NNMATWAATGN		 PBM
Weirauch et al.(2014)
pTH8244 		0.808 0.772
ANL2
M06919_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
ANL2_col_a 		0.808 0.772
ANL2
M06920_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
ANL2_colamp_a 		0.808 0.772
HDG11
M02039_2.00 		Arabidopsis thaliana
DCATTWAWKD
HMWTWAATGH		 PBM
Weirauch et al.(2014)
pTH7664 		0.804 0.737
HDG11
M06904_2.00 		Arabidopsis thaliana
DCATTWAWTRH
DYAWTWAATGH		 Dap-seq
OMalley et al.(2016)
EDT1_col 		0.804 0.737
HDG9
M10628_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$HDG9_01 		0.802 0.649
HDG7
M06931_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
HDG7_col_a 		0.766 0.702
HDG7
M10629_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$HDG7_01 		0.766 0.702
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Fb00210.1.p Homeodomain 78 134

Links

Other Homeodomain family TFs
Other Panicum virgatum TFs

619 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_22386 Aegilops tauschii F775_22386 N
F775_30314 Aegilops tauschii F775_30314 N
Aquca_005_00468 Aquilegia coerulea Aquca_005_00468 N
Bostr.27991s0138 Boechera stricta Bostr.27991s0138 N
BRADI3G43000 Brachypodium distachyon BRADI3G43000 N
PK29286.1 Cannabis sativa PK29286.1 N
Cagra.15046s0001 Capsella grandiflora Cagra.15046s0001 N
Carubv10024278m.g Capsella rubella Carubv10024278m.g N
evm.TU.supercontig_5.128 Carica papaya evm.TU.supercontig_5.128 N
Ca_00735 Cicer arietinum Ca_00735 N
Ca_11505 Cicer arietinum Ca_11505 N
Ca_17446 Cicer arietinum Ca_17446 N
Ca_19047 Cicer arietinum Ca_19047 N
Cla001071 Citrullus lanatus Cla001071 N
Cla016461 Citrullus lanatus Cla016461 N
Cla018029 Citrullus lanatus Cla018029 N
Ciclev10012712m.g Citrus clementina Ciclev10012712m.g N
orange1.1g027730m.g Citrus sinensis orange1.1g027730m.g N
orange1.1g028583m.g Citrus sinensis orange1.1g028583m.g N
Cucsa.200310 Cucumis sativus Cucsa.200310 N
Cucsa.313040 Cucumis sativus Cucsa.313040 N
Cucsa.378840 Cucumis sativus Cucsa.378840 N
Eucgr.A01594 Eucalyptus grandis Eucgr.A01594 N
Eucgr.B03915 Eucalyptus grandis Eucgr.B03915 N
Eucgr.D02206 Eucalyptus grandis Eucgr.D02206 N
Eucgr.E00276 Eucalyptus grandis Eucgr.E00276 N
gene00954-v1.0-hybrid Fragaria vesca gene00954-v1.0-hybrid N
GLYMA01G02180 Glycine max GLYMA01G02180 N
GLYMA08G36641 Glycine max GLYMA08G36641 N
GLYMA09G33770 Glycine max GLYMA09G33770 N
GLYMA10G07240 Glycine max GLYMA10G07240 N
GLYMA13G21140 Glycine max GLYMA13G21140 N
GLYMA19G37220 Glycine max GLYMA19G37220 N
Gorai.001G117900 Gossypium raimondii Gorai.001G117900 N
Gorai.006G159900 Gossypium raimondii Gorai.006G159900 N
Gorai.009G411100 Gossypium raimondii Gorai.009G411100 N
MLOC_23439 Hordeum vulgare MLOC_23439 N
MLOC_26846 Hordeum vulgare MLOC_26846 N
LPERR02G23300 Leersia perrieri LPERR02G23300 N
LPERR08G20370 Leersia perrieri LPERR08G20370 N
Lus10004577.g Linum usitatissimum Lus10004577.g N
Lus10014396.g Linum usitatissimum Lus10014396.g N
Lus10027735.g Linum usitatissimum Lus10027735.g N
Lus10030968.g Linum usitatissimum Lus10030968.g N
Lus10035554.g Linum usitatissimum Lus10035554.g N
Lus10040082.g Linum usitatissimum Lus10040082.g N
cassava15058.m1 Manihot esculenta cassava15058.m1 N
cassava28497.m1 Manihot esculenta cassava28497.m1 N
cassava9017.m1 Manihot esculenta cassava9017.m1 N
MTR_1g062160 Medicago truncatula MTR_1g062160 N
MTR_7g102790 Medicago truncatula MTR_7g102790 N
MTR_8g066820 Medicago truncatula MTR_8g066820 N
mgf006916m Mimulus guttatus mgf006916m N
mgf013167m Mimulus guttatus mgf013167m N
mgf023930m Mimulus guttatus mgf023930m N
GSMUA_Achr2G18160_001 Musa acuminata GSMUA_Achr2G18160_001 N
GSMUA_Achr5G18120_001 Musa acuminata GSMUA_Achr5G18120_001 N
GSMUA_Achr7G04460_001 Musa acuminata GSMUA_Achr7G04460_001 N
GSMUA_AchrUn_randomG07560_001 Musa acuminata GSMUA_AchrUn_randomG07560_001 N
OBART01G17820 Oryza barthii OBART01G17820 N
OBART02G28660 Oryza barthii OBART02G28660 N
OBART08G23610 Oryza barthii OBART08G23610 N
OBART11G11470 Oryza barthii OBART11G11470 N
OB01G27340 Oryza brachyantha OB01G27340 N
OB02G35810 Oryza brachyantha OB02G35810 N
OB08G30470 Oryza brachyantha OB08G30470 N
ORGLA01G0145800 Oryza glaberrima ORGLA01G0145800 N
ORGLA02G0246600 Oryza glaberrima ORGLA02G0246600 N
ORGLA08G0190300 Oryza glaberrima ORGLA08G0190300 N
ORGLA11G0098700 Oryza glaberrima ORGLA11G0098700 N
ORGLA11G0204800 Oryza glaberrima ORGLA11G0204800 N
OGLUM01G21080 Oryza glumaepatula OGLUM01G21080 N
OGLUM02G29250 Oryza glumaepatula OGLUM02G29250 N
OGLUM08G25080 Oryza glumaepatula OGLUM08G25080 N
OGLUM11G11350 Oryza glumaepatula OGLUM11G11350 N
BGIOSGA001528 Oryza indica BGIOSGA001528 N
BGIOSGA005806 Oryza indica BGIOSGA005806 N
BGIOSGA026486 Oryza indica BGIOSGA026486 N
BGIOSGA035191 Oryza indica BGIOSGA035191 N
OLONG_020563 Oryza longistaminata OLONG_020563 N
OLONG_023395 Oryza longistaminata OLONG_023395 N
OMERI01G16650 Oryza meridionalis OMERI01G16650 N
OMERI08G18450 Oryza meridionalis OMERI08G18450 N
ONIVA02G31400 Oryza nivara ONIVA02G31400 N
ONIVA08G26670 Oryza nivara ONIVA08G26670 N
OPUNC01G18340 Oryza punctata OPUNC01G18340 N
OPUNC02G26310 Oryza punctata OPUNC02G26310 N
OPUNC08G21610 Oryza punctata OPUNC08G21610 N
ORUFI02G30220 Oryza rufipogon ORUFI02G30220 N
ORUFI08G26100 Oryza rufipogon ORUFI08G26100 N
OS01G0517800 Oryza sativa OS01G0517800 N
OS02G0692700 Oryza sativa OS02G0692700 N
OS08G0560300 Oryza sativa OS08G0560300 N
Pavir.Aa01152 Panicum virgatum Pavir.Aa01152 N
Pavir.Ab01769 Panicum virgatum Pavir.Ab01769 N
Pavir.Ea01651 Panicum virgatum Pavir.Ea01651 N
Pavir.Eb02108 Panicum virgatum Pavir.Eb02108 N
Pavir.Fa00017 Panicum virgatum Pavir.Fa00017 N
Pavir.Fb02226 Panicum virgatum Pavir.Fb02226 N
Pavir.J13246 Panicum virgatum Pavir.J13246 N
POPTR_0001s21990 Populus trichocarpa POPTR_0001s21990 N
POPTR_0003s09160 Populus trichocarpa POPTR_0003s09160 N
POPTR_0006s12100 Populus trichocarpa POPTR_0006s12100 N
POPTR_0009s00830 Populus trichocarpa POPTR_0009s00830 N
POPTR_0016s10920 Populus trichocarpa POPTR_0016s10920 N
Pm026291 Prunus mume Pm026291 N
PRUPE_ppa011630mg Prunus persica PRUPE_ppa011630mg N
29589.m001281 Ricinus communis 29589.m001281 N
SapurV1A.0226s0270 Salix purpurea SapurV1A.0226s0270 N
SapurV1A.0288s0160 Salix purpurea SapurV1A.0288s0160 N
SapurV1A.0360s0060 Salix purpurea SapurV1A.0360s0060 N
Si004809m.g Setaria italica Si004809m.g N
Solyc10g085800.1 Solanum lycopersicum Solyc10g085800.1 N
PGSC0003DMG400008598 Solanum tuberosum PGSC0003DMG400008598 N
Sb04g031230 Sorghum bicolor Sb04g031230 N
Sb07g024020 Sorghum bicolor Sb07g024020 N
Sb08g005380 Sorghum bicolor Sb08g005380 N
TCM_022356 Theobroma cacao TCM_022356 N
Traes_3AL_970EF6E45 Triticum aestivum Traes_3AL_970EF6E45 N
Traes_3AL_CF608F443 Triticum aestivum Traes_3AL_CF608F443 N
TRAES3BF035900070CFD_g Triticum aestivum TRAES3BF035900070CFD_g N
TRAES3BF035900140CFD_g Triticum aestivum TRAES3BF035900140CFD_g N
TRAES3BF035900190CFD_g Triticum aestivum TRAES3BF035900190CFD_g N
Traes_3DL_6A5CA5C37 Triticum aestivum Traes_3DL_6A5CA5C37 N
Traes_3DL_96F825D26 Triticum aestivum Traes_3DL_96F825D26 N
Traes_7AS_9EA289C71 Triticum aestivum Traes_7AS_9EA289C71 N
TRIUR3_09966 Triticum urartu TRIUR3_09966 N
TRIUR3_27842 Triticum urartu TRIUR3_27842 N
TRIUR3_34039 Triticum urartu TRIUR3_34039 N
VIT_02s0012g01400 Vitis vinifera VIT_02s0012g01400 N
VIT_08s0007g04560 Vitis vinifera VIT_08s0007g04560 N
GRMZM2G091044 Zea mays GRMZM2G091044 N
GRMZM2G171934 Zea mays GRMZM2G171934 N