Pavir.J33010 (Panicum virgatum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Pavir.J33010 T229364_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
WOX11
M06916_2.00 		Arabidopsis thaliana
ADTTAATTAVD
HBTAATTAAHT		 Dap-seq
OMalley et al.(2016)
WOX11_col_a 		0.801 0.825
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J33010.1.p Homeodomain 20 81

Links

Other Homeodomain family TFs
Other Panicum virgatum TFs

215 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000007513 Ailuropoda melanoleuca ENSAMEG00000007513 I
Alligator_sinensis_CCG009030.1 Alligator sinensis Alligator_sinensis_CCG009030.1 I
ENSAPLG00000007421 Anas platyrhynchos ENSAPLG00000007421 I
ENSACAG00000003497 Anolis carolinensis ENSACAG00000003497 I
Afo_R007440 Aptenodytes forsteri Afo_R007440 I
ENSBTAP00000010016-D1 Bos grunniens ENSBTAP00000010016-D1 I
TERF2 Bos taurus ENSBTAG00000007617 I
TERF2 Callithrix jacchus ENSCJAG00000015339 I
Aan_R009163 Calypte anna Aan_R009163 I
TERF2 Canis familiaris ENSCAFG00000020267 I
TERF2 Cavia porcellus ENSCPOG00000003717 I
ENSCSAG00000004144 Chlorocebus sabaeus ENSCSAG00000004144 I
TERF2 Choloepus hoffmanni ENSCHOG00000010819 I
TERF2 Dasypus novemcinctus ENSDNOG00000014627 I
Terf2 Dipodomys ordii ENSDORG00000011208 I
TERF2 Echinops telfairi ENSETEG00000013553 I
TERF2 Equus caballus ENSECAG00000024534 I
ENSFCAG00000013579 Felis catus ENSFCAG00000013579 I
ENSFALG00000002781 Ficedula albicollis ENSFALG00000002781 I
TERF2 Gorilla gorilla ENSGGOG00000004372 I
TERF2 Homo sapiens ENSG00000132604 I
ENSSTOG00000012882 Ictidomys tridecemlineatus ENSSTOG00000012882 I
ENSLACG00000005641 Latimeria chalumnae ENSLACG00000005641 N
ENSLOCG00000001317 Lepisosteus oculatus ENSLOCG00000001317 I
ENSP00000254942 Macaca fascicularis ENSP00000254942 I
TERF2 Macaca mulatta ENSMMUG00000016633 I
TERF2 Monodelphis domestica ENSMODG00000002766 I
ENSMPUG00000007352 Mustela putorius furo ENSMPUG00000007352 I
Terf2 Mus musculus ENSMUSG00000031921 D
Myotis_brandtii_TERF2_10022452 Myotis brandtii Myotis_brandtii_TERF2_10022452 I
TERF2 Myotis lucifugus ENSMLUG00000006584 I
ENSNLEG00000005506 Nomascus leucogenys ENSNLEG00000005506 I
TERF2 Ochotona princeps ENSOPRG00000006995 I
TERF2 Ornithorhynchus anatinus ENSOANG00000002365 I
TERF2 Oryctolagus cuniculus ENSOCUG00000017662 I
TERF2 Otolemur garnettii ENSOGAG00000008071 I
ENSOARG00000003567 Ovis aries ENSOARG00000003567 I
TERF2 Pan troglodytes ENSPTRG00000008281 I
ENSPANG00000018001 Papio anubis ENSPANG00000018001 I
ENSPSIG00000011530 Pelodiscus sinensis ENSPSIG00000011530 I
Pvit_16279 Pogona vitticeps Pvit_16279 I
ENSPPYG00000007505 Pongo abelii ENSPPYG00000007505 I
TERF2 Procavia capensis ENSPCAG00000006534 I
TERF2 Pteropus vampyrus ENSPVAG00000015982 I
Terf2 Rattus norvegicus ENSRNOG00000020435 I
ENSSHAG00000013733 Sarcophilus harrisii ENSSHAG00000013733 I
TERF2 Sus scrofa ENSSSCG00000002762 I
ENSTGUG00000008090 Taeniopygia guttata ENSTGUG00000008090 I
ENSTSYG00000008563 Tarsius syrichta ENSTSYG00000008563 I
TERF2 Tupaia belangeri ENSTBEG00000011528 I
Tal_R010022 Tyto alba Tal_R010022 I
TERF2 Vicugna pacos ENSVPAG00000003993 I
terf2.L Xenopus laevis XB-GENE-990302 I
terf2 Xenopus tropicalis XB-GENE-990299 I