Pavir.J33010 (Panicum virgatum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Pavir.J33010 T229364_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
WOX11
M06916_2.00 		Arabidopsis thaliana
ADTTAATTAVD
HBTAATTAAHT		 Dap-seq
OMalley et al.(2016)
WOX11_col_a 		0.801 0.825
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J33010.1.p Homeodomain 20 81

Links

Other Homeodomain family TFs
Other Panicum virgatum TFs

215 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
WOX10 Oryza indica BGIOSGA027391 I 0.858
BRADI3G18800 Brachypodium distachyon BRADI3G18800 I 0.858
F775_11947 Aegilops tauschii F775_11947 I 0.858
GRMZM2G170958 Zea mays GRMZM2G170958 I 0.858
OGLUM08G08120 Oryza glumaepatula OGLUM08G08120 I 0.858
ONIVA08G08030 Oryza nivara ONIVA08G08030 I 0.858
ORGLA08G0063600 Oryza glaberrima ORGLA08G0063600 I 0.858
ORUFI08G08400 Oryza rufipogon ORUFI08G08400 I 0.858
WOX10 Oryza sativa OS08G0242400 I 0.858
Sb07g007600 Sorghum bicolor Sb07g007600 I 0.858
Si015065m.g Setaria italica Si015065m.g I 0.858
Pavir.Fb01029 Panicum virgatum Pavir.Fb01029 I 0.858
GRMZM2G314064 Zea mays GRMZM2G314064 I 0.845
OB08G17020 Oryza brachyantha OB08G17020 I 0.836
Bo11772s010 Brassica oleracea Bo11772s010 I 0.833
Bra023638 Brassica rapa Bra023638 I 0.833
MLOC_6669 Hordeum vulgare MLOC_6669 I 0.827
TRAES3BF079200050CFD_g Triticum aestivum TRAES3BF079200050CFD_g I 0.827
TRIUR3_34876 Triticum urartu TRIUR3_34876 I 0.827
mgf017527m Mimulus guttatus mgf017527m I 0.816
AMTR_s00119p00100440 Amborella trichopoda AMTR_s00119p00100440 I 0.814
WOX6 Oryza indica BGIOSGA010824 I 0.814
BGIOSGA026413 Oryza indica BGIOSGA026413 I 0.814
F775_22811 Aegilops tauschii F775_22811 I 0.814
GLYMA03G01000 Glycine max GLYMA03G01000 I 0.814
GLYMA19G29660 Glycine max GLYMA19G29660 I 0.814
GRMZM2G162481 Zea mays GRMZM2G162481 I 0.814
GSMUA_Achr9G05010_001 Musa acuminata GSMUA_Achr9G05010_001 I 0.814
LPERR03G13850 Leersia perrieri LPERR03G13850 I 0.814
LPERR07G23470 Leersia perrieri LPERR07G23470 I 0.814
MLOC_65745 Hordeum vulgare MLOC_65745 I 0.814
MTR_6g027390 Medicago truncatula MTR_6g027390 I 0.814
OBART03G15820 Oryza barthii OBART03G15820 I 0.814
OBART07G26670 Oryza barthii OBART07G26670 I 0.814
OGLUM03G15990 Oryza glumaepatula OGLUM03G15990 I 0.814
OGLUM07G26700 Oryza glumaepatula OGLUM07G26700 I 0.814
OMERI07G23310 Oryza meridionalis OMERI07G23310 I 0.814
ONIVA07G26430 Oryza nivara ONIVA07G26430 I 0.814
OPUNC03G15320 Oryza punctata OPUNC03G15320 I 0.814
OPUNC07G25100 Oryza punctata OPUNC07G25100 I 0.814
ORGLA03G0151500 Oryza glaberrima ORGLA03G0151500 I 0.814
ORGLA07G0211000 Oryza glaberrima ORGLA07G0211000 I 0.814
ORUFI03G16410 Oryza rufipogon ORUFI03G16410 I 0.814
ORUFI07G27650 Oryza rufipogon ORUFI07G27650 I 0.814
OS03G0325600 Oryza sativa OS03G0325600 I 0.814
WOX11 Oryza sativa OS07G0684900 I 0.814
Sb01g036670 Sorghum bicolor Sb01g036670 I 0.814
Sb02g043300 Sorghum bicolor Sb02g043300 I 0.814
Si030836m.g Setaria italica Si030836m.g I 0.814
Si039112m.g Setaria italica Si039112m.g I 0.814
Traes_2BS_8A1FE01EE Triticum aestivum Traes_2BS_8A1FE01EE I 0.814
Traes_2DS_B5227B5F6 Triticum aestivum Traes_2DS_B5227B5F6 I 0.814
Traes_4AS_EC04D9E8A Triticum aestivum Traes_4AS_EC04D9E8A I 0.814
Traes_4DL_5E79CC79C Triticum aestivum Traes_4DL_5E79CC79C I 0.814
Eucgr.A02149 Eucalyptus grandis Eucgr.A02149 I 0.814
evm.TU.supercontig_73.3 Carica papaya evm.TU.supercontig_73.3 I 0.814
Pavir.Ba00249 Panicum virgatum Pavir.Ba00249 I 0.814
Pavir.Ia03448 Panicum virgatum Pavir.Ia03448 I 0.814
Pavir.J23422 Panicum virgatum Pavir.J23422 I 0.814
BRADI1G17420 Brachypodium distachyon BRADI1G17420 I 0.812
GSMUA_Achr10G12820_001 Musa acuminata GSMUA_Achr10G12820_001 I 0.812
GSMUA_Achr5G27730_001 Musa acuminata GSMUA_Achr5G27730_001 I 0.812
GSMUA_Achr6G15910_001 Musa acuminata GSMUA_Achr6G15910_001 I 0.812
GSMUA_Achr8G01590_001 Musa acuminata GSMUA_Achr8G01590_001 I 0.812
MTR_7g086940 Medicago truncatula MTR_7g086940 I 0.812
POPTR_0013s06310 Populus trichocarpa POPTR_0013s06310 I 0.812
POPTR_0019s05730 Populus trichocarpa POPTR_0019s05730 I 0.812
PRUPE_ppa026303mg Prunus persica PRUPE_ppa026303mg I 0.812
TCM_025805 Theobroma cacao TCM_025805 I 0.812
Ca_08180 Cicer arietinum Ca_08180 I 0.812
Ca_19701 Cicer arietinum Ca_19701 I 0.812
30072.m000927 Ricinus communis 30072.m000927 I 0.812
cassava15562.m1 Manihot esculenta cassava15562.m1 I 0.812
cassava4770.m1 Manihot esculenta cassava4770.m1 I 0.812
Cucsa.336980 Cucumis sativus Cucsa.336980 I 0.812
mgf016673m Mimulus guttatus mgf016673m I 0.812
Aquca_014_00949 Aquilegia coerulea Aquca_014_00949 I 0.812
Ciclev10021682m.g Citrus clementina Ciclev10021682m.g I 0.812
gene30337-v1.0-hybrid Fragaria vesca gene30337-v1.0-hybrid I 0.812
Gorai.007G346300 Gossypium raimondii Gorai.007G346300 I 0.812
Gorai.013G196400 Gossypium raimondii Gorai.013G196400 I 0.812
MDP0000136426 Malus domestica MDP0000136426 I 0.812
MDP0000524885 Malus domestica MDP0000524885 I 0.812
orange1.1g047211m.g Citrus sinensis orange1.1g047211m.g I 0.812
SapurV1A.0631s0110 Salix purpurea SapurV1A.0631s0110 I 0.812
SapurV1A.1660s0010 Salix purpurea SapurV1A.1660s0010 I 0.812
LjSGA_037808.1 Lotus japonicus LjSGA_037808.1 I 0.812
LjT26C04.20.nd Lotus japonicus LjT26C04.20.nd I 0.812
WOX12 Arabidopsis lyrata Al_scaffold_0006_1694 I 0.810
WOX12 Arabidopsis thaliana AT5G17810 I 0.810
VIT_08s0056g01200 Vitis vinifera VIT_08s0056g01200 I 0.810
GSMUA_Achr10G05090_001 Musa acuminata GSMUA_Achr10G05090_001 I 0.808
Bo1g153650 Brassica oleracea Bo1g153650 I 0.802
Bo2g013980 Brassica oleracea Bo2g013980 I 0.802
Bo2g062660 Brassica oleracea Bo2g062660 I 0.802
Bo9g159820 Brassica oleracea Bo9g159820 I 0.802
Bra002108 Brassica rapa Bra002108 I 0.802
Bra036446 Brassica rapa Bra036446 I 0.802
Bostr.19046s0084 Boechera stricta Bostr.19046s0084 I 0.802
Cagra.2098s0022 Capsella grandiflora Cagra.2098s0022 I 0.802
Carubv10016081m.g Capsella rubella Carubv10016081m.g I 0.802
Thhalv10015651m.g Eutrema salsugineum Thhalv10015651m.g I 0.802
Thhalv10022222m.g Eutrema salsugineum Thhalv10022222m.g I 0.802
WOX11 Arabidopsis thaliana AT3G03660 D 0.801
WOX11 Arabidopsis lyrata fgenesh2_kg.3__312__AT3G03660.1 I 0.801
Bo5g148780 Brassica oleracea Bo5g148780 I 0.800
Bra031980 Brassica rapa Bra031980 I 0.800
PGSC0003DMG400027030 Solanum tuberosum PGSC0003DMG400027030 I 0.800
Solyc06g072890.1 Solanum lycopersicum Solyc06g072890.1 I 0.800
Cagra.6254s0027 Capsella grandiflora Cagra.6254s0027 I 0.800
Carubv10003719m.g Capsella rubella Carubv10003719m.g I 0.800
TRIUR3_34808 Triticum urartu TRIUR3_34808 I 0.793
Pm025458 Prunus mume Pm025458 I 0.792
LPERR07G23520 Leersia perrieri LPERR07G23520 I 0.781
GSMUA_Achr3G09460_001 Musa acuminata GSMUA_Achr3G09460_001 I 0.769
GRMZM2G409881 Zea mays GRMZM2G409881 I 0.743
Sb09g028562 Sorghum bicolor Sb09g028562 I 0.743
Si025013m.g Setaria italica Si025013m.g I 0.743
Pavir.Ca00938 Panicum virgatum Pavir.Ca00938 I 0.743
Pavir.Ib01521 Panicum virgatum Pavir.Ib01521 I 0.730
WOX9 Arabidopsis lyrata Al_scaffold_0004_1872 I 0.726
AMTR_s00021p00189010 Amborella trichopoda AMTR_s00021p00189010 I 0.726
WOX9 Arabidopsis thaliana AT2G33880 I 0.726
BGIOSGA001059 Oryza indica BGIOSGA001059 I 0.726
Bo3g027500 Brassica oleracea Bo3g027500 I 0.726
Bo4g041330 Brassica oleracea Bo4g041330 I 0.726
Bra005464 Brassica rapa Bra005464 I 0.726
Bra022960 Brassica rapa Bra022960 I 0.726
GLYMA07G32430 Glycine max GLYMA07G32430 I 0.726
GLYMA10G08030 Glycine max GLYMA10G08030 I 0.726
GLYMA13G21860 Glycine max GLYMA13G21860 I 0.726
GLYMA13G24150 Glycine max GLYMA13G24150 I 0.726
GRMZM2G031882 Zea mays GRMZM2G031882 I 0.726
GRMZM2G133972 Zea mays GRMZM2G133972 I 0.726
GSMUA_Achr8G27170_001 Musa acuminata GSMUA_Achr8G27170_001 I 0.726
GSMUA_Achr9G06660_001 Musa acuminata GSMUA_Achr9G06660_001 I 0.726
LPERR01G22080 Leersia perrieri LPERR01G22080 I 0.726
MTR_2g015000 Medicago truncatula MTR_2g015000 I 0.726
MTR_7g025010 Medicago truncatula MTR_7g025010 I 0.726
OB01G35000 Oryza brachyantha OB01G35000 I 0.726
OBART01G25820 Oryza barthii OBART01G25820 I 0.726
OGLUM01G29670 Oryza glumaepatula OGLUM01G29670 I 0.726
OMERI01G23480 Oryza meridionalis OMERI01G23480 I 0.726
ONIVA01G29060 Oryza nivara ONIVA01G29060 I 0.726
ORGLA01G0211300 Oryza glaberrima ORGLA01G0211300 I 0.726
OS01G0667450 Oryza sativa OS01G0667450 I 0.726
PGSC0003DMG400010725 Solanum tuberosum PGSC0003DMG400010725 I 0.726
POPTR_0004s05090 Populus trichocarpa POPTR_0004s05090 I 0.726
POPTR_0011s05980 Populus trichocarpa POPTR_0011s05980 I 0.726
PRUPE_ppa019841mg Prunus persica PRUPE_ppa019841mg I 0.726
Solyc02g077390.1 Solanum lycopersicum Solyc02g077390.1 I 0.726
TCM_029776 Theobroma cacao TCM_029776 I 0.726
VIT_10s0003g00560 Vitis vinifera VIT_10s0003g00560 I 0.726
Ca_00357 Cicer arietinum Ca_00357 I 0.726
Ca_06365 Cicer arietinum Ca_06365 I 0.726
Cla009819 Citrullus lanatus Cla009819 I 0.726
Pm010370 Prunus mume Pm010370 I 0.726
29900.m001555 Ricinus communis 29900.m001555 I 0.726
cassava40675.m1 Manihot esculenta cassava40675.m1 I 0.726
cassava4506.m1 Manihot esculenta cassava4506.m1 I 0.726
Cucsa.046640 Cucumis sativus Cucsa.046640 I 0.726
mgf001579m Mimulus guttatus mgf001579m I 0.726
Aquca_036_00007 Aquilegia coerulea Aquca_036_00007 I 0.726
Bostr.23794s0703 Boechera stricta Bostr.23794s0703 I 0.726
Cagra.1195s0012 Capsella grandiflora Cagra.1195s0012 I 0.726
Carubv10025224m.g Capsella rubella Carubv10025224m.g I 0.726
Ciclev10015562m.g Citrus clementina Ciclev10015562m.g I 0.726
Eucgr.D00577 Eucalyptus grandis Eucgr.D00577 I 0.726
evm.TU.supercontig_7.12 Carica papaya evm.TU.supercontig_7.12 I 0.726
gene29786-v1.0-hybrid Fragaria vesca gene29786-v1.0-hybrid I 0.726
Gorai.009G165700 Gossypium raimondii Gorai.009G165700 I 0.726
Gorai.011G031300 Gossypium raimondii Gorai.011G031300 I 0.726
Lus10005282.g Linum usitatissimum Lus10005282.g I 0.726
MDP0000232004 Malus domestica MDP0000232004 I 0.726
MDP0000729328 Malus domestica MDP0000729328 I 0.726
orange1.1g036145m.g Citrus sinensis orange1.1g036145m.g I 0.726
Pavir.Eb02702 Panicum virgatum Pavir.Eb02702 I 0.726
SapurV1A.0012s0880 Salix purpurea SapurV1A.0012s0880 I 0.726
SapurV1A.0270s0270 Salix purpurea SapurV1A.0270s0270 I 0.726
Thhalv10016784m.g Eutrema salsugineum Thhalv10016784m.g I 0.726
CM1489.70.nc Lotus japonicus CM1489.70.nc I 0.726
gene28935-v1.0-hybrid Fragaria vesca gene28935-v1.0-hybrid I 0.725
MLOC_7925 Hordeum vulgare MLOC_7925 I 0.722
Si004249m.g Setaria italica Si004249m.g I 0.722
TRAES3BF022100010CFD_g Triticum aestivum TRAES3BF022100010CFD_g I 0.722
PDK_20s13009443g001 Phoenix dactylifera PDK_20s13009443g001 I 0.719
OB10G14840 Oryza brachyantha OB10G14840 I 0.718
BGIOSGA020366 Oryza indica BGIOSGA020366 I 0.710
F775_23099 Aegilops tauschii F775_23099 I 0.710
OBART05G25900 Oryza barthii OBART05G25900 I 0.710
OGLUM05G27500 Oryza glumaepatula OGLUM05G27500 I 0.710
ONIVA05G27800 Oryza nivara ONIVA05G27800 I 0.710
OPUNC05G23480 Oryza punctata OPUNC05G23480 I 0.710
ORGLA05G0223800 Oryza glaberrima ORGLA05G0223800 I 0.710
ORUFI05G27780 Oryza rufipogon ORUFI05G27780 I 0.710
OS05G0564500 Oryza sativa OS05G0564500 I 0.710
Bo2g127670 Brassica oleracea Bo2g127670 I 0.690
Bra022008 Brassica rapa Bra022008 I 0.690
WOX8 Arabidopsis lyrata scaffold_800245.1 I 0.690
Bostr.8819s0128 Boechera stricta Bostr.8819s0128 I 0.690
Cagra.2097s0014 Capsella grandiflora Cagra.2097s0014 I 0.690
Carubv10027735m.g Capsella rubella Carubv10027735m.g I 0.690
WOX8 Arabidopsis thaliana AT5G45980 I 0.685
MTR_4g088080 Medicago truncatula MTR_4g088080 I 0.670
Thhalv10001099m.g Eutrema salsugineum Thhalv10001099m.g I 0.670
Bo9g070070 Brassica oleracea Bo9g070070 I 0.665
Bra017448 Brassica rapa Bra017448 I 0.665
MTR_4g088070 Medicago truncatula MTR_4g088070 I 0.653
SELMODRAFT_115439 Selaginella moellendorffii SELMODRAFT_115439 I 0.651
SELMODRAFT_123325 Selaginella moellendorffii SELMODRAFT_123325 I 0.651
SELMODRAFT_417553 Selaginella moellendorffii SELMODRAFT_417553 I 0.631
SELMODRAFT_419270 Selaginella moellendorffii SELMODRAFT_419270 I 0.631
PDK_20s1465351g003 Phoenix dactylifera PDK_20s1465351g003 I 0.621
gene20491-v1.0-hybrid Fragaria vesca gene20491-v1.0-hybrid I 0.601
SELMODRAFT_451015 Selaginella moellendorffii SELMODRAFT_451015 I 0.599