gene28935-v1.0-hybrid (Fragaria vesca)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 gene28935-v1.0-hybrid T228641_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
WOX11
M06916_2.00 		Arabidopsis thaliana
ADTTAATTAVD
HBTAATTAAHT		 Dap-seq
OMalley et al.(2016)
WOX11_col_a 		0.724 0.632
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna28935.1-v1.0-hybrid Homeodomain 53 114

Links

Other Homeodomain family TFs
Other Fragaria vesca TFs

213 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
mgf001579m Mimulus guttatus mgf001579m I 0.836
WOX9 Arabidopsis lyrata Al_scaffold_0004_1872 I 0.834
AMTR_s00021p00189010 Amborella trichopoda AMTR_s00021p00189010 I 0.834
WOX9 Arabidopsis thaliana AT2G33880 I 0.834
Bo3g027500 Brassica oleracea Bo3g027500 I 0.834
Bo4g041330 Brassica oleracea Bo4g041330 I 0.834
Bra005464 Brassica rapa Bra005464 I 0.834
GLYMA07G32430 Glycine max GLYMA07G32430 I 0.834
GLYMA10G08030 Glycine max GLYMA10G08030 I 0.834
GLYMA13G21860 Glycine max GLYMA13G21860 I 0.834
GLYMA13G24150 Glycine max GLYMA13G24150 I 0.834
MTR_2g015000 Medicago truncatula MTR_2g015000 I 0.834
POPTR_0004s05090 Populus trichocarpa POPTR_0004s05090 I 0.834
POPTR_0011s05980 Populus trichocarpa POPTR_0011s05980 I 0.834
PRUPE_ppa019841mg Prunus persica PRUPE_ppa019841mg I 0.834
TCM_029776 Theobroma cacao TCM_029776 I 0.834
VIT_10s0003g00560 Vitis vinifera VIT_10s0003g00560 I 0.834
Ca_00357 Cicer arietinum Ca_00357 I 0.834
Ca_06365 Cicer arietinum Ca_06365 I 0.834
Pm010370 Prunus mume Pm010370 I 0.834
29900.m001555 Ricinus communis 29900.m001555 I 0.834
cassava40675.m1 Manihot esculenta cassava40675.m1 I 0.834
cassava4506.m1 Manihot esculenta cassava4506.m1 I 0.834
Aquca_036_00007 Aquilegia coerulea Aquca_036_00007 I 0.834
Bostr.23794s0703 Boechera stricta Bostr.23794s0703 I 0.834
Cagra.1195s0012 Capsella grandiflora Cagra.1195s0012 I 0.834
Carubv10025224m.g Capsella rubella Carubv10025224m.g I 0.834
Ciclev10015562m.g Citrus clementina Ciclev10015562m.g I 0.834
Eucgr.D00577 Eucalyptus grandis Eucgr.D00577 I 0.834
evm.TU.supercontig_7.12 Carica papaya evm.TU.supercontig_7.12 I 0.834
gene29786-v1.0-hybrid Fragaria vesca gene29786-v1.0-hybrid I 0.834
Gorai.009G165700 Gossypium raimondii Gorai.009G165700 I 0.834
Lus10005282.g Linum usitatissimum Lus10005282.g I 0.834
MDP0000232004 Malus domestica MDP0000232004 I 0.834
MDP0000729328 Malus domestica MDP0000729328 I 0.834
orange1.1g036145m.g Citrus sinensis orange1.1g036145m.g I 0.834
SapurV1A.0012s0880 Salix purpurea SapurV1A.0012s0880 I 0.834
SapurV1A.0270s0270 Salix purpurea SapurV1A.0270s0270 I 0.834
Thhalv10016784m.g Eutrema salsugineum Thhalv10016784m.g I 0.834
CM1489.70.nc Lotus japonicus CM1489.70.nc I 0.834
PGSC0003DMG400010725 Solanum tuberosum PGSC0003DMG400010725 I 0.823
Solyc02g077390.1 Solanum lycopersicum Solyc02g077390.1 I 0.823
BGIOSGA001059 Oryza indica BGIOSGA001059 I 0.812
Bra022960 Brassica rapa Bra022960 I 0.812
GSMUA_Achr8G27170_001 Musa acuminata GSMUA_Achr8G27170_001 I 0.812
GSMUA_Achr9G06660_001 Musa acuminata GSMUA_Achr9G06660_001 I 0.812
LPERR01G22080 Leersia perrieri LPERR01G22080 I 0.812
MTR_7g025010 Medicago truncatula MTR_7g025010 I 0.812
OB01G35000 Oryza brachyantha OB01G35000 I 0.812
OBART01G25820 Oryza barthii OBART01G25820 I 0.812
OGLUM01G29670 Oryza glumaepatula OGLUM01G29670 I 0.812
OMERI01G23480 Oryza meridionalis OMERI01G23480 I 0.812
ONIVA01G29060 Oryza nivara ONIVA01G29060 I 0.812
ORGLA01G0211300 Oryza glaberrima ORGLA01G0211300 I 0.812
OS01G0667450 Oryza sativa OS01G0667450 I 0.812
Cla009819 Citrullus lanatus Cla009819 I 0.812
Cucsa.046640 Cucumis sativus Cucsa.046640 I 0.812
Gorai.011G031300 Gossypium raimondii Gorai.011G031300 I 0.812
GRMZM2G031882 Zea mays GRMZM2G031882 I 0.801
GRMZM2G133972 Zea mays GRMZM2G133972 I 0.801
Pavir.Eb02702 Panicum virgatum Pavir.Eb02702 I 0.801
BGIOSGA020366 Oryza indica BGIOSGA020366 I 0.796
OBART05G25900 Oryza barthii OBART05G25900 I 0.796
OGLUM05G27500 Oryza glumaepatula OGLUM05G27500 I 0.796
ONIVA05G27800 Oryza nivara ONIVA05G27800 I 0.796
OPUNC05G23480 Oryza punctata OPUNC05G23480 I 0.796
ORGLA05G0223800 Oryza glaberrima ORGLA05G0223800 I 0.796
ORUFI05G27780 Oryza rufipogon ORUFI05G27780 I 0.796
OS05G0564500 Oryza sativa OS05G0564500 I 0.796
Si004249m.g Setaria italica Si004249m.g I 0.796
Bo2g127670 Brassica oleracea Bo2g127670 I 0.786
Bra022008 Brassica rapa Bra022008 I 0.786
WOX8 Arabidopsis lyrata scaffold_800245.1 I 0.786
Cagra.2097s0014 Capsella grandiflora Cagra.2097s0014 I 0.786
Carubv10027735m.g Capsella rubella Carubv10027735m.g I 0.786
GRMZM2G409881 Zea mays GRMZM2G409881 I 0.784
Sb09g028562 Sorghum bicolor Sb09g028562 I 0.784
Si025013m.g Setaria italica Si025013m.g I 0.784
Pavir.Ca00938 Panicum virgatum Pavir.Ca00938 I 0.784
WOX8 Arabidopsis thaliana AT5G45980 I 0.781
Thhalv10001099m.g Eutrema salsugineum Thhalv10001099m.g I 0.766
Bostr.8819s0128 Boechera stricta Bostr.8819s0128 I 0.764
MLOC_7925 Hordeum vulgare MLOC_7925 I 0.762
TRAES3BF022100010CFD_g Triticum aestivum TRAES3BF022100010CFD_g I 0.762
LPERR07G23520 Leersia perrieri LPERR07G23520 I 0.757
F775_23099 Aegilops tauschii F775_23099 I 0.751
PRUPE_ppa026303mg Prunus persica PRUPE_ppa026303mg I 0.738
gene30337-v1.0-hybrid Fragaria vesca gene30337-v1.0-hybrid I 0.738
MDP0000136426 Malus domestica MDP0000136426 I 0.738
MDP0000524885 Malus domestica MDP0000524885 I 0.738
mgf017527m Mimulus guttatus mgf017527m I 0.730
WOX12 Arabidopsis lyrata Al_scaffold_0006_1694 I 0.725
AMTR_s00119p00100440 Amborella trichopoda AMTR_s00119p00100440 I 0.725
WOX12 Arabidopsis thaliana AT5G17810 I 0.725
WOX6 Oryza indica BGIOSGA010824 I 0.725
BGIOSGA026413 Oryza indica BGIOSGA026413 I 0.725
WOX10 Oryza indica BGIOSGA027391 I 0.725
Bo11772s010 Brassica oleracea Bo11772s010 I 0.725
Bo1g153650 Brassica oleracea Bo1g153650 I 0.725
Bo2g013980 Brassica oleracea Bo2g013980 I 0.725
Bo2g062660 Brassica oleracea Bo2g062660 I 0.725
Bo5g148780 Brassica oleracea Bo5g148780 I 0.725
Bo9g159820 Brassica oleracea Bo9g159820 I 0.725
Bra002108 Brassica rapa Bra002108 I 0.725
Bra023638 Brassica rapa Bra023638 I 0.725
Bra031980 Brassica rapa Bra031980 I 0.725
Bra036446 Brassica rapa Bra036446 I 0.725
BRADI1G17420 Brachypodium distachyon BRADI1G17420 I 0.725
BRADI3G18800 Brachypodium distachyon BRADI3G18800 I 0.725
F775_11947 Aegilops tauschii F775_11947 I 0.725
F775_22811 Aegilops tauschii F775_22811 I 0.725
GLYMA03G01000 Glycine max GLYMA03G01000 I 0.725
GLYMA19G29660 Glycine max GLYMA19G29660 I 0.725
GRMZM2G162481 Zea mays GRMZM2G162481 I 0.725
GRMZM2G170958 Zea mays GRMZM2G170958 I 0.725
GRMZM2G314064 Zea mays GRMZM2G314064 I 0.725
GSMUA_Achr10G12820_001 Musa acuminata GSMUA_Achr10G12820_001 I 0.725
GSMUA_Achr5G27730_001 Musa acuminata GSMUA_Achr5G27730_001 I 0.725
GSMUA_Achr6G15910_001 Musa acuminata GSMUA_Achr6G15910_001 I 0.725
GSMUA_Achr8G01590_001 Musa acuminata GSMUA_Achr8G01590_001 I 0.725
GSMUA_Achr9G05010_001 Musa acuminata GSMUA_Achr9G05010_001 I 0.725
LPERR03G13850 Leersia perrieri LPERR03G13850 I 0.725
LPERR07G23470 Leersia perrieri LPERR07G23470 I 0.725
MLOC_65745 Hordeum vulgare MLOC_65745 I 0.725
MLOC_6669 Hordeum vulgare MLOC_6669 I 0.725
MTR_6g027390 Medicago truncatula MTR_6g027390 I 0.725
MTR_7g086940 Medicago truncatula MTR_7g086940 I 0.725
OB08G17020 Oryza brachyantha OB08G17020 I 0.725
OBART03G15820 Oryza barthii OBART03G15820 I 0.725
OBART07G26670 Oryza barthii OBART07G26670 I 0.725
OGLUM03G15990 Oryza glumaepatula OGLUM03G15990 I 0.725
OGLUM07G26700 Oryza glumaepatula OGLUM07G26700 I 0.725
OGLUM08G08120 Oryza glumaepatula OGLUM08G08120 I 0.725
OMERI07G23310 Oryza meridionalis OMERI07G23310 I 0.725
ONIVA07G26430 Oryza nivara ONIVA07G26430 I 0.725
ONIVA08G08030 Oryza nivara ONIVA08G08030 I 0.725
OPUNC03G15320 Oryza punctata OPUNC03G15320 I 0.725
OPUNC07G25100 Oryza punctata OPUNC07G25100 I 0.725
ORGLA03G0151500 Oryza glaberrima ORGLA03G0151500 I 0.725
ORGLA07G0211000 Oryza glaberrima ORGLA07G0211000 I 0.725
ORGLA08G0063600 Oryza glaberrima ORGLA08G0063600 I 0.725
ORUFI03G16410 Oryza rufipogon ORUFI03G16410 I 0.725
ORUFI07G27650 Oryza rufipogon ORUFI07G27650 I 0.725
ORUFI08G08400 Oryza rufipogon ORUFI08G08400 I 0.725
OS03G0325600 Oryza sativa OS03G0325600 I 0.725
WOX11 Oryza sativa OS07G0684900 I 0.725
WOX10 Oryza sativa OS08G0242400 I 0.725
PGSC0003DMG400027030 Solanum tuberosum PGSC0003DMG400027030 I 0.725
POPTR_0013s06310 Populus trichocarpa POPTR_0013s06310 I 0.725
POPTR_0019s05730 Populus trichocarpa POPTR_0019s05730 I 0.725
Sb01g036670 Sorghum bicolor Sb01g036670 I 0.725
Sb02g043300 Sorghum bicolor Sb02g043300 I 0.725
Sb07g007600 Sorghum bicolor Sb07g007600 I 0.725
Si015065m.g Setaria italica Si015065m.g I 0.725
Si030836m.g Setaria italica Si030836m.g I 0.725
Si039112m.g Setaria italica Si039112m.g I 0.725
Solyc06g072890.1 Solanum lycopersicum Solyc06g072890.1 I 0.725
TCM_025805 Theobroma cacao TCM_025805 I 0.725
Traes_2BS_8A1FE01EE Triticum aestivum Traes_2BS_8A1FE01EE I 0.725
Traes_2DS_B5227B5F6 Triticum aestivum Traes_2DS_B5227B5F6 I 0.725
TRAES3BF079200050CFD_g Triticum aestivum TRAES3BF079200050CFD_g I 0.725
Traes_4AS_EC04D9E8A Triticum aestivum Traes_4AS_EC04D9E8A I 0.725
Traes_4DL_5E79CC79C Triticum aestivum Traes_4DL_5E79CC79C I 0.725
TRIUR3_34876 Triticum urartu TRIUR3_34876 I 0.725
VIT_08s0056g01200 Vitis vinifera VIT_08s0056g01200 I 0.725
Ca_08180 Cicer arietinum Ca_08180 I 0.725
Ca_19701 Cicer arietinum Ca_19701 I 0.725
30072.m000927 Ricinus communis 30072.m000927 I 0.725
cassava15562.m1 Manihot esculenta cassava15562.m1 I 0.725
cassava4770.m1 Manihot esculenta cassava4770.m1 I 0.725
Cucsa.336980 Cucumis sativus Cucsa.336980 I 0.725
mgf016673m Mimulus guttatus mgf016673m I 0.725
Aquca_014_00949 Aquilegia coerulea Aquca_014_00949 I 0.725
Bostr.19046s0084 Boechera stricta Bostr.19046s0084 I 0.725
Cagra.2098s0022 Capsella grandiflora Cagra.2098s0022 I 0.725
Cagra.6254s0027 Capsella grandiflora Cagra.6254s0027 I 0.725
Carubv10003719m.g Capsella rubella Carubv10003719m.g I 0.725
Carubv10016081m.g Capsella rubella Carubv10016081m.g I 0.725
Ciclev10021682m.g Citrus clementina Ciclev10021682m.g I 0.725
Eucgr.A02149 Eucalyptus grandis Eucgr.A02149 I 0.725
evm.TU.supercontig_73.3 Carica papaya evm.TU.supercontig_73.3 I 0.725
Gorai.007G346300 Gossypium raimondii Gorai.007G346300 I 0.725
Gorai.013G196400 Gossypium raimondii Gorai.013G196400 I 0.725
orange1.1g047211m.g Citrus sinensis orange1.1g047211m.g I 0.725
Pavir.Ba00249 Panicum virgatum Pavir.Ba00249 I 0.725
Pavir.Fb01029 Panicum virgatum Pavir.Fb01029 I 0.725
Pavir.Ia03448 Panicum virgatum Pavir.Ia03448 I 0.725
Pavir.J23422 Panicum virgatum Pavir.J23422 I 0.725
Pavir.J33010 Panicum virgatum Pavir.J33010 I 0.725
SapurV1A.0631s0110 Salix purpurea SapurV1A.0631s0110 I 0.725
SapurV1A.1660s0010 Salix purpurea SapurV1A.1660s0010 I 0.725
Thhalv10015651m.g Eutrema salsugineum Thhalv10015651m.g I 0.725
Thhalv10022222m.g Eutrema salsugineum Thhalv10022222m.g I 0.725
LjSGA_037808.1 Lotus japonicus LjSGA_037808.1 I 0.725
LjT26C04.20.nd Lotus japonicus LjT26C04.20.nd I 0.725
WOX11 Arabidopsis thaliana AT3G03660 D 0.724
WOX11 Arabidopsis lyrata fgenesh2_kg.3__312__AT3G03660.1 I 0.724
GSMUA_Achr10G05090_001 Musa acuminata GSMUA_Achr10G05090_001 I 0.721
Pm025458 Prunus mume Pm025458 I 0.718
PDK_20s1465351g003 Phoenix dactylifera PDK_20s1465351g003 I 0.707
MTR_4g088080 Medicago truncatula MTR_4g088080 I 0.704
TRIUR3_34808 Triticum urartu TRIUR3_34808 I 0.704
GSMUA_Achr3G09460_001 Musa acuminata GSMUA_Achr3G09460_001 I 0.680
MTR_4g088070 Medicago truncatula MTR_4g088070 I 0.677
OMERI07G13960 Oryza meridionalis OMERI07G13960 N 0.674
ORGLA07G0240100 Oryza glaberrima ORGLA07G0240100 N 0.674
OS07G0533201 Oryza sativa OS07G0533201 N 0.674
PDK_20s13009443g001 Phoenix dactylifera PDK_20s13009443g001 I 0.652
Pavir.Ib01521 Panicum virgatum Pavir.Ib01521 I 0.649
Bo9g070070 Brassica oleracea Bo9g070070 I 0.633
Bra017448 Brassica rapa Bra017448 I 0.633
OB10G14840 Oryza brachyantha OB10G14840 I 0.630
EMIHUDRAFT_433818 Emiliania huxleyi EMIHUDRAFT_433818 N 0.600