Pavir.Eb02702 (Panicum virgatum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Pavir.Eb02702 T229255_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
WOX11
M06916_2.00 		Arabidopsis thaliana
ADTTAATTAVD
HBTAATTAAHT		 Dap-seq
OMalley et al.(2016)
WOX11_col_a 		0.726 0.702
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Eb02702.1.p Homeodomain 68 129

Links

Other Homeodomain family TFs
Other Panicum virgatum TFs

217 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GRMZM2G031882 Zea mays GRMZM2G031882 I 0.867
GRMZM2G133972 Zea mays GRMZM2G133972 I 0.867
Si004249m.g Setaria italica Si004249m.g I 0.862
BGIOSGA001059 Oryza indica BGIOSGA001059 I 0.855
GSMUA_Achr8G27170_001 Musa acuminata GSMUA_Achr8G27170_001 I 0.855
GSMUA_Achr9G06660_001 Musa acuminata GSMUA_Achr9G06660_001 I 0.855
LPERR01G22080 Leersia perrieri LPERR01G22080 I 0.855
OB01G35000 Oryza brachyantha OB01G35000 I 0.855
OBART01G25820 Oryza barthii OBART01G25820 I 0.855
OGLUM01G29670 Oryza glumaepatula OGLUM01G29670 I 0.855
OMERI01G23480 Oryza meridionalis OMERI01G23480 I 0.855
ONIVA01G29060 Oryza nivara ONIVA01G29060 I 0.855
ORGLA01G0211300 Oryza glaberrima ORGLA01G0211300 I 0.855
OS01G0667450 Oryza sativa OS01G0667450 I 0.855
Cla009819 Citrullus lanatus Cla009819 I 0.855
Cucsa.046640 Cucumis sativus Cucsa.046640 I 0.855
BGIOSGA020366 Oryza indica BGIOSGA020366 I 0.839
OBART05G25900 Oryza barthii OBART05G25900 I 0.839
OGLUM05G27500 Oryza glumaepatula OGLUM05G27500 I 0.839
ONIVA05G27800 Oryza nivara ONIVA05G27800 I 0.839
OPUNC05G23480 Oryza punctata OPUNC05G23480 I 0.839
ORGLA05G0223800 Oryza glaberrima ORGLA05G0223800 I 0.839
ORUFI05G27780 Oryza rufipogon ORUFI05G27780 I 0.839
OS05G0564500 Oryza sativa OS05G0564500 I 0.839
WOX9 Arabidopsis lyrata Al_scaffold_0004_1872 I 0.833
AMTR_s00021p00189010 Amborella trichopoda AMTR_s00021p00189010 I 0.833
WOX9 Arabidopsis thaliana AT2G33880 I 0.833
Bo3g027500 Brassica oleracea Bo3g027500 I 0.833
Bo4g041330 Brassica oleracea Bo4g041330 I 0.833
Bra005464 Brassica rapa Bra005464 I 0.833
Bra022960 Brassica rapa Bra022960 I 0.833
GLYMA07G32430 Glycine max GLYMA07G32430 I 0.833
GLYMA10G08030 Glycine max GLYMA10G08030 I 0.833
GLYMA13G21860 Glycine max GLYMA13G21860 I 0.833
GLYMA13G24150 Glycine max GLYMA13G24150 I 0.833
MTR_2g015000 Medicago truncatula MTR_2g015000 I 0.833
MTR_7g025010 Medicago truncatula MTR_7g025010 I 0.833
PGSC0003DMG400010725 Solanum tuberosum PGSC0003DMG400010725 I 0.833
POPTR_0004s05090 Populus trichocarpa POPTR_0004s05090 I 0.833
POPTR_0011s05980 Populus trichocarpa POPTR_0011s05980 I 0.833
PRUPE_ppa019841mg Prunus persica PRUPE_ppa019841mg I 0.833
Solyc02g077390.1 Solanum lycopersicum Solyc02g077390.1 I 0.833
TCM_029776 Theobroma cacao TCM_029776 I 0.833
VIT_10s0003g00560 Vitis vinifera VIT_10s0003g00560 I 0.833
Ca_00357 Cicer arietinum Ca_00357 I 0.833
Ca_06365 Cicer arietinum Ca_06365 I 0.833
Pm010370 Prunus mume Pm010370 I 0.833
29900.m001555 Ricinus communis 29900.m001555 I 0.833
cassava40675.m1 Manihot esculenta cassava40675.m1 I 0.833
cassava4506.m1 Manihot esculenta cassava4506.m1 I 0.833
Aquca_036_00007 Aquilegia coerulea Aquca_036_00007 I 0.833
Bostr.23794s0703 Boechera stricta Bostr.23794s0703 I 0.833
Cagra.1195s0012 Capsella grandiflora Cagra.1195s0012 I 0.833
Carubv10025224m.g Capsella rubella Carubv10025224m.g I 0.833
Ciclev10015562m.g Citrus clementina Ciclev10015562m.g I 0.833
evm.TU.supercontig_7.12 Carica papaya evm.TU.supercontig_7.12 I 0.833
gene29786-v1.0-hybrid Fragaria vesca gene29786-v1.0-hybrid I 0.833
Gorai.009G165700 Gossypium raimondii Gorai.009G165700 I 0.833
Gorai.011G031300 Gossypium raimondii Gorai.011G031300 I 0.833
Lus10005282.g Linum usitatissimum Lus10005282.g I 0.833
MDP0000232004 Malus domestica MDP0000232004 I 0.833
MDP0000729328 Malus domestica MDP0000729328 I 0.833
orange1.1g036145m.g Citrus sinensis orange1.1g036145m.g I 0.833
SapurV1A.0012s0880 Salix purpurea SapurV1A.0012s0880 I 0.833
SapurV1A.0270s0270 Salix purpurea SapurV1A.0270s0270 I 0.833
Thhalv10016784m.g Eutrema salsugineum Thhalv10016784m.g I 0.833
CM1489.70.nc Lotus japonicus CM1489.70.nc I 0.833
Eucgr.D00577 Eucalyptus grandis Eucgr.D00577 I 0.832
mgf001579m Mimulus guttatus mgf001579m I 0.831
MLOC_7925 Hordeum vulgare MLOC_7925 I 0.828
TRAES3BF022100010CFD_g Triticum aestivum TRAES3BF022100010CFD_g I 0.828
F775_23099 Aegilops tauschii F775_23099 I 0.817
Bo2g127670 Brassica oleracea Bo2g127670 I 0.808
Bra022008 Brassica rapa Bra022008 I 0.808
WOX8 Arabidopsis lyrata scaffold_800245.1 I 0.808
Bostr.8819s0128 Boechera stricta Bostr.8819s0128 I 0.808
Cagra.2097s0014 Capsella grandiflora Cagra.2097s0014 I 0.808
Carubv10027735m.g Capsella rubella Carubv10027735m.g I 0.808
WOX8 Arabidopsis thaliana AT5G45980 I 0.803
gene28935-v1.0-hybrid Fragaria vesca gene28935-v1.0-hybrid I 0.801
Thhalv10001099m.g Eutrema salsugineum Thhalv10001099m.g I 0.788
GRMZM2G409881 Zea mays GRMZM2G409881 I 0.782
Sb09g028562 Sorghum bicolor Sb09g028562 I 0.782
Si025013m.g Setaria italica Si025013m.g I 0.782
Pavir.Ca00938 Panicum virgatum Pavir.Ca00938 I 0.782
LPERR07G23520 Leersia perrieri LPERR07G23520 I 0.759
OB08G17020 Oryza brachyantha OB08G17020 I 0.749
cassava4770.m1 Manihot esculenta cassava4770.m1 I 0.748
PGSC0003DMG400027030 Solanum tuberosum PGSC0003DMG400027030 I 0.739
Solyc06g072890.1 Solanum lycopersicum Solyc06g072890.1 I 0.739
mgf017527m Mimulus guttatus mgf017527m I 0.732
PDK_20s1465351g003 Phoenix dactylifera PDK_20s1465351g003 I 0.727
WOX12 Arabidopsis lyrata Al_scaffold_0006_1694 I 0.726
AMTR_s00119p00100440 Amborella trichopoda AMTR_s00119p00100440 I 0.726
WOX11 Arabidopsis thaliana AT3G03660 D 0.726
WOX12 Arabidopsis thaliana AT5G17810 I 0.726
WOX6 Oryza indica BGIOSGA010824 I 0.726
BGIOSGA026413 Oryza indica BGIOSGA026413 I 0.726
WOX10 Oryza indica BGIOSGA027391 I 0.726
Bo11772s010 Brassica oleracea Bo11772s010 I 0.726
Bo1g153650 Brassica oleracea Bo1g153650 I 0.726
Bo2g013980 Brassica oleracea Bo2g013980 I 0.726
Bo2g062660 Brassica oleracea Bo2g062660 I 0.726
Bo5g148780 Brassica oleracea Bo5g148780 I 0.726
Bo9g159820 Brassica oleracea Bo9g159820 I 0.726
Bra002108 Brassica rapa Bra002108 I 0.726
Bra023638 Brassica rapa Bra023638 I 0.726
Bra031980 Brassica rapa Bra031980 I 0.726
Bra036446 Brassica rapa Bra036446 I 0.726
BRADI1G17420 Brachypodium distachyon BRADI1G17420 I 0.726
BRADI3G18800 Brachypodium distachyon BRADI3G18800 I 0.726
F775_11947 Aegilops tauschii F775_11947 I 0.726
F775_22811 Aegilops tauschii F775_22811 I 0.726
WOX11 Arabidopsis lyrata fgenesh2_kg.3__312__AT3G03660.1 I 0.726
GLYMA03G01000 Glycine max GLYMA03G01000 I 0.726
GLYMA19G29660 Glycine max GLYMA19G29660 I 0.726
GRMZM2G162481 Zea mays GRMZM2G162481 I 0.726
GRMZM2G170958 Zea mays GRMZM2G170958 I 0.726
GRMZM2G314064 Zea mays GRMZM2G314064 I 0.726
GSMUA_Achr10G12820_001 Musa acuminata GSMUA_Achr10G12820_001 I 0.726
GSMUA_Achr5G27730_001 Musa acuminata GSMUA_Achr5G27730_001 I 0.726
GSMUA_Achr6G15910_001 Musa acuminata GSMUA_Achr6G15910_001 I 0.726
GSMUA_Achr8G01590_001 Musa acuminata GSMUA_Achr8G01590_001 I 0.726
GSMUA_Achr9G05010_001 Musa acuminata GSMUA_Achr9G05010_001 I 0.726
LPERR03G13850 Leersia perrieri LPERR03G13850 I 0.726
LPERR07G23470 Leersia perrieri LPERR07G23470 I 0.726
MLOC_65745 Hordeum vulgare MLOC_65745 I 0.726
MLOC_6669 Hordeum vulgare MLOC_6669 I 0.726
MTR_6g027390 Medicago truncatula MTR_6g027390 I 0.726
MTR_7g086940 Medicago truncatula MTR_7g086940 I 0.726
OBART03G15820 Oryza barthii OBART03G15820 I 0.726
OBART07G26670 Oryza barthii OBART07G26670 I 0.726
OGLUM03G15990 Oryza glumaepatula OGLUM03G15990 I 0.726
OGLUM07G26700 Oryza glumaepatula OGLUM07G26700 I 0.726
OGLUM08G08120 Oryza glumaepatula OGLUM08G08120 I 0.726
OMERI07G23310 Oryza meridionalis OMERI07G23310 I 0.726
ONIVA07G26430 Oryza nivara ONIVA07G26430 I 0.726
ONIVA08G08030 Oryza nivara ONIVA08G08030 I 0.726
OPUNC03G15320 Oryza punctata OPUNC03G15320 I 0.726
OPUNC07G25100 Oryza punctata OPUNC07G25100 I 0.726
ORGLA03G0151500 Oryza glaberrima ORGLA03G0151500 I 0.726
ORGLA07G0211000 Oryza glaberrima ORGLA07G0211000 I 0.726
ORGLA08G0063600 Oryza glaberrima ORGLA08G0063600 I 0.726
ORUFI03G16410 Oryza rufipogon ORUFI03G16410 I 0.726
ORUFI07G27650 Oryza rufipogon ORUFI07G27650 I 0.726
ORUFI08G08400 Oryza rufipogon ORUFI08G08400 I 0.726
OS03G0325600 Oryza sativa OS03G0325600 I 0.726
WOX11 Oryza sativa OS07G0684900 I 0.726
WOX10 Oryza sativa OS08G0242400 I 0.726
POPTR_0013s06310 Populus trichocarpa POPTR_0013s06310 I 0.726
POPTR_0019s05730 Populus trichocarpa POPTR_0019s05730 I 0.726
PRUPE_ppa026303mg Prunus persica PRUPE_ppa026303mg I 0.726
Sb01g036670 Sorghum bicolor Sb01g036670 I 0.726
Sb02g043300 Sorghum bicolor Sb02g043300 I 0.726
Sb07g007600 Sorghum bicolor Sb07g007600 I 0.726
Si015065m.g Setaria italica Si015065m.g I 0.726
Si030836m.g Setaria italica Si030836m.g I 0.726
Si039112m.g Setaria italica Si039112m.g I 0.726
TCM_025805 Theobroma cacao TCM_025805 I 0.726
Traes_2BS_8A1FE01EE Triticum aestivum Traes_2BS_8A1FE01EE I 0.726
Traes_2DS_B5227B5F6 Triticum aestivum Traes_2DS_B5227B5F6 I 0.726
TRAES3BF079200050CFD_g Triticum aestivum TRAES3BF079200050CFD_g I 0.726
Traes_4AS_EC04D9E8A Triticum aestivum Traes_4AS_EC04D9E8A I 0.726
Traes_4DL_5E79CC79C Triticum aestivum Traes_4DL_5E79CC79C I 0.726
TRIUR3_34876 Triticum urartu TRIUR3_34876 I 0.726
VIT_08s0056g01200 Vitis vinifera VIT_08s0056g01200 I 0.726
Ca_08180 Cicer arietinum Ca_08180 I 0.726
Ca_19701 Cicer arietinum Ca_19701 I 0.726
30072.m000927 Ricinus communis 30072.m000927 I 0.726
cassava15562.m1 Manihot esculenta cassava15562.m1 I 0.726
Cucsa.336980 Cucumis sativus Cucsa.336980 I 0.726
mgf016673m Mimulus guttatus mgf016673m I 0.726
Aquca_014_00949 Aquilegia coerulea Aquca_014_00949 I 0.726
Bostr.19046s0084 Boechera stricta Bostr.19046s0084 I 0.726
Cagra.2098s0022 Capsella grandiflora Cagra.2098s0022 I 0.726
Cagra.6254s0027 Capsella grandiflora Cagra.6254s0027 I 0.726
Carubv10003719m.g Capsella rubella Carubv10003719m.g I 0.726
Carubv10016081m.g Capsella rubella Carubv10016081m.g I 0.726
Ciclev10021682m.g Citrus clementina Ciclev10021682m.g I 0.726
Eucgr.A02149 Eucalyptus grandis Eucgr.A02149 I 0.726
evm.TU.supercontig_73.3 Carica papaya evm.TU.supercontig_73.3 I 0.726
gene30337-v1.0-hybrid Fragaria vesca gene30337-v1.0-hybrid I 0.726
Gorai.007G346300 Gossypium raimondii Gorai.007G346300 I 0.726
Gorai.013G196400 Gossypium raimondii Gorai.013G196400 I 0.726
MDP0000136426 Malus domestica MDP0000136426 I 0.726
MDP0000524885 Malus domestica MDP0000524885 I 0.726
orange1.1g047211m.g Citrus sinensis orange1.1g047211m.g I 0.726
Pavir.Ba00249 Panicum virgatum Pavir.Ba00249 I 0.726
Pavir.Fb01029 Panicum virgatum Pavir.Fb01029 I 0.726
Pavir.Ia03448 Panicum virgatum Pavir.Ia03448 I 0.726
Pavir.J23422 Panicum virgatum Pavir.J23422 I 0.726
Pavir.J33010 Panicum virgatum Pavir.J33010 I 0.726
SapurV1A.0631s0110 Salix purpurea SapurV1A.0631s0110 I 0.726
SapurV1A.1660s0010 Salix purpurea SapurV1A.1660s0010 I 0.726
Thhalv10015651m.g Eutrema salsugineum Thhalv10015651m.g I 0.726
Thhalv10022222m.g Eutrema salsugineum Thhalv10022222m.g I 0.726
LjSGA_037808.1 Lotus japonicus LjSGA_037808.1 I 0.726
LjT26C04.20.nd Lotus japonicus LjT26C04.20.nd I 0.726
GSMUA_Achr10G05090_001 Musa acuminata GSMUA_Achr10G05090_001 I 0.723
OMERI07G13960 Oryza meridionalis OMERI07G13960 N 0.716
ORGLA07G0240100 Oryza glaberrima ORGLA07G0240100 N 0.716
OS07G0533201 Oryza sativa OS07G0533201 N 0.716
TRIUR3_34808 Triticum urartu TRIUR3_34808 I 0.706
Pm025458 Prunus mume Pm025458 I 0.706
MTR_4g088080 Medicago truncatula MTR_4g088080 I 0.697
MTR_4g088070 Medicago truncatula MTR_4g088070 I 0.694
GSMUA_Achr3G09460_001 Musa acuminata GSMUA_Achr3G09460_001 I 0.682
Pavir.Ib01521 Panicum virgatum Pavir.Ib01521 I 0.658
Bo9g070070 Brassica oleracea Bo9g070070 I 0.654
Bra017448 Brassica rapa Bra017448 I 0.654
PDK_20s13009443g001 Phoenix dactylifera PDK_20s13009443g001 I 0.654
OB10G14840 Oryza brachyantha OB10G14840 I 0.631
Bo8g106350 Brassica oleracea Bo8g106350 I 0.614
Bra026791 Brassica rapa Bra026791 I 0.614
Thhalv10009654m.g Eutrema salsugineum Thhalv10009654m.g I 0.614
SELMODRAFT_115439 Selaginella moellendorffii SELMODRAFT_115439 I 0.612
SELMODRAFT_123325 Selaginella moellendorffii SELMODRAFT_123325 I 0.612