gene20491-v1.0-hybrid (Fragaria vesca)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 gene20491-v1.0-hybrid T228623_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
WOX13
M02049_2.00 		Arabidopsis thaliana
YTGATTGA
TCAATCAR		 PBM
Weirauch et al.(2014)
pTH6461 		0.818 0.684
WOX13
M00866_2.00 		Arabidopsis thaliana
NNTGATTGAN
NTCAATCANN		 PBM
Franco-Zorrilla et al.(2014)
WOX13 		0.818 0.684
GRMZM2G038252
M02137_2.00 		Zea mays
HTRATTGV
BCAATYAD		 PBM
Weirauch et al.(2014)
pTH6141 		0.805 0.719
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna20491.1-v1.0-hybrid Homeodomain 83 144

Links

Other Homeodomain family TFs
Other Fragaria vesca TFs

190 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TCM_034409 Theobroma cacao TCM_034409 I 0.826
Gorai.004G038300 Gossypium raimondii Gorai.004G038300 I 0.824
Eucgr.I02222 Eucalyptus grandis Eucgr.I02222 I 0.823
GLYMA04G01830 Glycine max GLYMA04G01830 I 0.822
GLYMA06G01940 Glycine max GLYMA06G01940 I 0.822
PRUPE_ppa011225mg Prunus persica PRUPE_ppa011225mg I 0.822
Pm022951 Prunus mume Pm022951 I 0.822
Gorai.003G002200 Gossypium raimondii Gorai.003G002200 I 0.822
GSMUA_Achr1G17980_001 Musa acuminata GSMUA_Achr1G17980_001 I 0.819
GSMUA_AchrUn_randomG18610_001 Musa acuminata GSMUA_AchrUn_randomG18610_001 I 0.819
TRAES3BF091200090CFD_g Triticum aestivum TRAES3BF091200090CFD_g I 0.819
TRAES3BF091200100CFD_g Triticum aestivum TRAES3BF091200100CFD_g I 0.819
AMTR_s00044p00155390 Amborella trichopoda AMTR_s00044p00155390 I 0.818
WOX13 Arabidopsis thaliana AT4G35550 D 0.818
BGIOSGA004695 Oryza indica BGIOSGA004695 I 0.818
Bo1g006370 Brassica oleracea Bo1g006370 I 0.818
Bra011623 Brassica rapa Bra011623 I 0.818
BRADI2G53390 Brachypodium distachyon BRADI2G53390 I 0.818
F775_11596 Aegilops tauschii F775_11596 I 0.818
LPERR01G30370 Leersia perrieri LPERR01G30370 I 0.818
MLOC_56124 Hordeum vulgare MLOC_56124 I 0.818
OB01G44030 Oryza brachyantha OB01G44030 I 0.818
OBART01G35170 Oryza barthii OBART01G35170 I 0.818
OLONG_016784 Oryza longistaminata OLONG_016784 I 0.818
OMERI01G32310 Oryza meridionalis OMERI01G32310 I 0.818
ONIVA01G40180 Oryza nivara ONIVA01G40180 I 0.818
OPUNC01G34140 Oryza punctata OPUNC01G34140 I 0.818
ORGLA01G0290300 Oryza glaberrima ORGLA01G0290300 I 0.818
ORUFI01G38500 Oryza rufipogon ORUFI01G38500 I 0.818
WOX8 Oryza sativa OS01G0818400 I 0.818
HB-4 Populus trichocarpa POPTR_0005s10480 I 0.818
PRUPE_ppa021400mg Prunus persica PRUPE_ppa021400mg I 0.818
HB-4 Arabidopsis lyrata scaffold_700564.1 I 0.818
TCM_000062 Theobroma cacao TCM_000062 I 0.818
Traes_3AL_D0053C177 Triticum aestivum Traes_3AL_D0053C177 I 0.818
TRAES3BF057600060CFD_g Triticum aestivum TRAES3BF057600060CFD_g I 0.818
Traes_3DL_6B1815F7D Triticum aestivum Traes_3DL_6B1815F7D I 0.818
Traes_3DS_97BBFFA03 Triticum aestivum Traes_3DS_97BBFFA03 I 0.818
TRIUR3_23636 Triticum urartu TRIUR3_23636 I 0.818
Pm026793 Prunus mume Pm026793 I 0.818
29830.m001452 Ricinus communis 29830.m001452 I 0.818
cassava23423.valid.m1 Manihot esculenta cassava23423.valid.m1 I 0.818
Bostr.7867s1413 Boechera stricta Bostr.7867s1413 I 0.818
Cagra.2350s0096 Capsella grandiflora Cagra.2350s0096 I 0.818
Carubv10005217m.g Capsella rubella Carubv10005217m.g I 0.818
Ciclev10026199m.g Citrus clementina Ciclev10026199m.g I 0.818
evm.TU.supercontig_6.368 Carica papaya evm.TU.supercontig_6.368 I 0.818
gene13035-v1.0-hybrid Fragaria vesca gene13035-v1.0-hybrid I 0.818
Gorai.001G199200 Gossypium raimondii Gorai.001G199200 I 0.818
MDP0000304650 Malus domestica MDP0000304650 I 0.818
MDP0000316517 Malus domestica MDP0000316517 I 0.818
orange1.1g022516m.g Citrus sinensis orange1.1g022516m.g I 0.818
SapurV1A.1240s0080 Salix purpurea SapurV1A.1240s0080 I 0.818
Thhalv10025989m.g Eutrema salsugineum Thhalv10025989m.g I 0.818
GSMUA_Achr5G11080_001 Musa acuminata GSMUA_Achr5G11080_001 I 0.816
chr1.CM0113.620.nc Lotus japonicus chr1.CM0113.620.nc I 0.816
PDK_20s1408301g001 Phoenix dactylifera PDK_20s1408301g001 I 0.813
Cla023819 Citrullus lanatus Cla023819 I 0.810
Cucsa.272210 Cucumis sativus Cucsa.272210 I 0.810
Ciclev10002354m.g Citrus clementina Ciclev10002354m.g I 0.810
orange1.1g026809m.g Citrus sinensis orange1.1g026809m.g I 0.810
VIT_04s0044g00150 Vitis vinifera VIT_04s0044g00150 I 0.806
PK07880.1 Cannabis sativa PK07880.1 I 0.806
GRMZM2G038252 Zea mays GRMZM2G038252 D 0.805
GRMZM2G069274 Zea mays GRMZM2G069274 I 0.805
GRMZM5G805026 Zea mays GRMZM5G805026 I 0.805
Sb03g038080 Sorghum bicolor Sb03g038080 I 0.805
Si002508m.g Setaria italica Si002508m.g I 0.805
Pavir.Ea03245 Panicum virgatum Pavir.Ea03245 I 0.805
Pavir.Eb03552 Panicum virgatum Pavir.Eb03552 I 0.805
gw1.224.39.1 Physcomitrella patens gw1.224.39.1 I 0.802
gw1.29.10.1 Physcomitrella patens gw1.29.10.1 I 0.802
Traes_3AS_9079D6B71 Triticum aestivum Traes_3AS_9079D6B71 I 0.796
Gorai.007G372000 Gossypium raimondii Gorai.007G372000 I 0.793
GSMUA_Achr4G25530_001 Musa acuminata GSMUA_Achr4G25530_001 I 0.791
MTR_3g115620 Medicago truncatula MTR_3g115620 I 0.791
GSMUA_Achr7G04050_001 Musa acuminata GSMUA_Achr7G04050_001 I 0.790
Ca_04823 Cicer arietinum Ca_04823 I 0.789
Bo7g117480 Brassica oleracea Bo7g117480 I 0.786
Bra017720 Brassica rapa Bra017720 I 0.786
GLYMA02G10410 Glycine max GLYMA02G10410 I 0.786
GLYMA10G43580 Glycine max GLYMA10G43580 I 0.786
GLYMA18G52491 Glycine max GLYMA18G52491 I 0.786
GLYMA20G23220 Glycine max GLYMA20G23220 I 0.786
PGSC0003DMG400001565 Solanum tuberosum PGSC0003DMG400001565 I 0.786
Solyc02g082670.2 Solanum lycopersicum Solyc02g082670.2 I 0.786
VIT_18s0122g01140 Vitis vinifera VIT_18s0122g01140 I 0.786
Cla009089 Citrullus lanatus Cla009089 I 0.786
Cucsa.323040 Cucumis sativus Cucsa.323040 I 0.786
mgf006573m Mimulus guttatus mgf006573m I 0.786
Aquca_007_00901 Aquilegia coerulea Aquca_007_00901 I 0.786
Lus10040447.g Linum usitatissimum Lus10040447.g I 0.786
MDP0000224466 Malus domestica MDP0000224466 I 0.786
MDP0000851699 Malus domestica MDP0000851699 I 0.786
MTR_1g115315 Medicago truncatula MTR_1g115315 I 0.785
Ca_18623 Cicer arietinum Ca_18623 I 0.785
Thhalv10009917m.g Eutrema salsugineum Thhalv10009917m.g I 0.782
Bo09314s010 Brassica oleracea Bo09314s010 I 0.781
Bo7g061410 Brassica oleracea Bo7g061410 I 0.781
WOX10 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1001761 I 0.781
Bo3g155580 Brassica oleracea Bo3g155580 I 0.780
Bra010531 Brassica rapa Bra010531 I 0.780
chr5.CM0180.70.nc Lotus japonicus chr5.CM0180.70.nc I 0.780
WOX14 Arabidopsis thaliana AT1G20700 I 0.779
Bo5g030590 Brassica oleracea Bo5g030590 I 0.779
Bra025839 Brassica rapa Bra025839 I 0.779
WOX14 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1001881 I 0.779
Bostr.3717s0001 Boechera stricta Bostr.3717s0001 I 0.779
Bostr.7128s0661 Boechera stricta Bostr.7128s0661 I 0.779
Cagra.6160s0025 Capsella grandiflora Cagra.6160s0025 I 0.779
Cagra.6160s0026 Capsella grandiflora Cagra.6160s0026 I 0.779
Carubv10010349m.g Capsella rubella Carubv10010349m.g I 0.779
Carubv10012447m.g Capsella rubella Carubv10012447m.g I 0.779
PK14252.1 Cannabis sativa PK14252.1 I 0.778
Ca_19383 Cicer arietinum Ca_19383 I 0.775
Ca_19386 Cicer arietinum Ca_19386 I 0.775
Lus10023561.g Linum usitatissimum Lus10023561.g I 0.775
LjT41B11.90.nd Lotus japonicus LjT41B11.90.nd I 0.775
GSMUA_Achr10G07260_001 Musa acuminata GSMUA_Achr10G07260_001 I 0.773
POPTR_0005s27410 Populus trichocarpa POPTR_0005s27410 I 0.773
Lus10016026.g Linum usitatissimum Lus10016026.g I 0.773
SapurV1A.0266s0300 Salix purpurea SapurV1A.0266s0300 I 0.773
POPTR_0002s00980 Populus trichocarpa POPTR_0002s00980 I 0.772
SapurV1A.0016s0590 Salix purpurea SapurV1A.0016s0590 I 0.772
evm.TU.supercontig_26.173 Carica papaya evm.TU.supercontig_26.173 I 0.770
Thhalv10008824m.g Eutrema salsugineum Thhalv10008824m.g I 0.767
WOX10 Arabidopsis thaliana AT1G20710 I 0.763
GSMUA_Achr4G29470_001 Musa acuminata GSMUA_Achr4G29470_001 I 0.761
SELMODRAFT_404178 Selaginella moellendorffii SELMODRAFT_404178 I 0.761
SELMODRAFT_407157 Selaginella moellendorffii SELMODRAFT_407157 I 0.761
MTR_7g023810 Medicago truncatula MTR_7g023810 I 0.753
Aquca_015_00333 Aquilegia coerulea Aquca_015_00333 I 0.751
VIT_04s0044g00160 Vitis vinifera VIT_04s0044g00160 I 0.750
SELMODRAFT_438787 Selaginella moellendorffii SELMODRAFT_438787 I 0.749
SELMODRAFT_451355 Selaginella moellendorffii SELMODRAFT_451355 I 0.749
cassava39214.m1 Manihot esculenta cassava39214.m1 I 0.749
GSMUA_Achr3G14840_001 Musa acuminata GSMUA_Achr3G14840_001 I 0.748
30170.m014389 Ricinus communis 30170.m014389 I 0.747
fgenesh1_pg.scaffold_217000007 Physcomitrella patens fgenesh1_pg.scaffold_217000007 I 0.746
EuGene.0600010372 Micromonas sp RCC299 EuGene.0600010372 I 0.708
SELMODRAFT_451353 Selaginella moellendorffii SELMODRAFT_451353 I 0.678
SELMODRAFT_84885 Selaginella moellendorffii SELMODRAFT_84885 I 0.676
estExt_fgenesh1_pg.C_90244 Micromonas pusilla estExt_fgenesh1_pg.C_90244 I 0.675
Bra012245 Brassica rapa Bra012245 I 0.665
PGSC0003DMG400006609 Solanum tuberosum PGSC0003DMG400006609 I 0.660
SELMODRAFT_417553 Selaginella moellendorffii SELMODRAFT_417553 I 0.648
SELMODRAFT_419270 Selaginella moellendorffii SELMODRAFT_419270 I 0.648
SELMODRAFT_115439 Selaginella moellendorffii SELMODRAFT_115439 I 0.641
SELMODRAFT_123325 Selaginella moellendorffii SELMODRAFT_123325 I 0.641
PGSC0003DMG400025358 Solanum tuberosum PGSC0003DMG400025358 I 0.628
Si004427m.g Setaria italica Si004427m.g I 0.628
Solyc11g072770.1 Solanum lycopersicum Solyc11g072770.1 I 0.628
WOX3 Arabidopsis thaliana AT2G28610 I 0.626
Bo3g040080 Brassica oleracea Bo3g040080 I 0.626
Bo4g165520 Brassica oleracea Bo4g165520 I 0.626
Bra000484 Brassica rapa Bra000484 I 0.626
Bra035688 Brassica rapa Bra035688 I 0.626
PRS Arabidopsis lyrata fgenesh2_kg.4__832__AT2G28610.1 I 0.626
TCM_041963 Theobroma cacao TCM_041963 I 0.626
PRS Vitis vinifera VIT_06s0004g03780 I 0.626
30039.m000243 Ricinus communis 30039.m000243 I 0.626
cassava26411.m1 Manihot esculenta cassava26411.m1 I 0.626
Aquca_046_00011 Aquilegia coerulea Aquca_046_00011 I 0.626
Bostr.27991s0061 Boechera stricta Bostr.27991s0061 I 0.626
Cagra.5013s0004 Capsella grandiflora Cagra.5013s0004 I 0.626
Carubv10024767m.g Capsella rubella Carubv10024767m.g I 0.626
Eucgr.B02435 Eucalyptus grandis Eucgr.B02435 I 0.626
Thhalv10017168m.g Eutrema salsugineum Thhalv10017168m.g I 0.626
cassava21140.m1 Manihot esculenta cassava21140.m1 I 0.620
BRADI2G54590 Brachypodium distachyon BRADI2G54590 I 0.614
GRMZM2G314064 Zea mays GRMZM2G314064 I 0.614
WOX1 Populus trichocarpa POPTR_0010s12150 I 0.606
mgf017527m Mimulus guttatus mgf017527m I 0.606
gene30464-v1.0-hybrid Fragaria vesca gene30464-v1.0-hybrid I 0.603
WOX10 Oryza indica BGIOSGA027391 I 0.601
Bo11772s010 Brassica oleracea Bo11772s010 I 0.601
Bra023638 Brassica rapa Bra023638 I 0.601
BRADI3G18800 Brachypodium distachyon BRADI3G18800 I 0.601
F775_11947 Aegilops tauschii F775_11947 I 0.601
GRMZM2G170958 Zea mays GRMZM2G170958 I 0.601
OGLUM08G08120 Oryza glumaepatula OGLUM08G08120 I 0.601
ONIVA08G08030 Oryza nivara ONIVA08G08030 I 0.601
ORGLA08G0063600 Oryza glaberrima ORGLA08G0063600 I 0.601
ORUFI08G08400 Oryza rufipogon ORUFI08G08400 I 0.601
WOX10 Oryza sativa OS08G0242400 I 0.601
Sb07g007600 Sorghum bicolor Sb07g007600 I 0.601
Si015065m.g Setaria italica Si015065m.g I 0.601
Pavir.Fb01029 Panicum virgatum Pavir.Fb01029 I 0.601
Pavir.J33010 Panicum virgatum Pavir.J33010 I 0.601
PDK_20s1363982g001 Phoenix dactylifera PDK_20s1363982g001 I 0.601