Bra012245 (Brassica rapa)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 Bra012245 T205085_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
WOX13
M02049_2.00 		Arabidopsis thaliana
YTGATTGA
TCAATCAR		 PBM
Weirauch et al.(2014)
pTH6461 		0.644 0.611
WOX13
M00866_2.00 		Arabidopsis thaliana
NNTGATTGAN
NTCAATCANN		 PBM
Franco-Zorrilla et al.(2014)
WOX13 		0.644 0.611
GRMZM2G038252
M02137_2.00 		Zea mays
HTRATTGV
BCAATYAD		 PBM
Weirauch et al.(2014)
pTH6141 		0.631 0.648
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra012245.1-P Homeodomain 75 133

Links

Other Homeodomain family TFs
Other Brassica rapa TFs

139 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo09314s010 Brassica oleracea Bo09314s010 I 0.751
Bo7g061410 Brassica oleracea Bo7g061410 I 0.751
Bostr.3717s0001 Boechera stricta Bostr.3717s0001 I 0.678
Cagra.6160s0025 Capsella grandiflora Cagra.6160s0025 I 0.678
Carubv10012447m.g Capsella rubella Carubv10012447m.g I 0.678
WOX10 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1001761 I 0.676
WOX14 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1001881 I 0.669
Bostr.7128s0661 Boechera stricta Bostr.7128s0661 I 0.669
Cagra.6160s0026 Capsella grandiflora Cagra.6160s0026 I 0.669
Carubv10010349m.g Capsella rubella Carubv10010349m.g I 0.669
WOX14 Arabidopsis thaliana AT1G20700 I 0.668
gene20491-v1.0-hybrid Fragaria vesca gene20491-v1.0-hybrid I 0.665
Bo5g030590 Brassica oleracea Bo5g030590 I 0.661
Bra025839 Brassica rapa Bra025839 I 0.661
Thhalv10008824m.g Eutrema salsugineum Thhalv10008824m.g I 0.657
TCM_034409 Theobroma cacao TCM_034409 I 0.655
Gorai.004G038300 Gossypium raimondii Gorai.004G038300 I 0.652
Gorai.007G372000 Gossypium raimondii Gorai.007G372000 I 0.652
Ciclev10002354m.g Citrus clementina Ciclev10002354m.g I 0.651
orange1.1g026809m.g Citrus sinensis orange1.1g026809m.g I 0.651
PRUPE_ppa011225mg Prunus persica PRUPE_ppa011225mg I 0.649
Pm022951 Prunus mume Pm022951 I 0.649
WOX10 Arabidopsis thaliana AT1G20710 I 0.648
GLYMA04G01830 Glycine max GLYMA04G01830 I 0.648
GLYMA06G01940 Glycine max GLYMA06G01940 I 0.648
GSMUA_Achr4G25530_001 Musa acuminata GSMUA_Achr4G25530_001 I 0.648
MTR_3g115620 Medicago truncatula MTR_3g115620 I 0.648
Ca_04823 Cicer arietinum Ca_04823 I 0.648
Eucgr.I02222 Eucalyptus grandis Eucgr.I02222 I 0.648
Thhalv10009917m.g Eutrema salsugineum Thhalv10009917m.g I 0.648
GSMUA_AchrUn_randomG18610_001 Musa acuminata GSMUA_AchrUn_randomG18610_001 I 0.647
Gorai.003G002200 Gossypium raimondii Gorai.003G002200 I 0.646
WOX13 Arabidopsis thaliana AT4G35550 D 0.644
BGIOSGA004695 Oryza indica BGIOSGA004695 I 0.644
Bo1g006370 Brassica oleracea Bo1g006370 I 0.644
Bo7g117480 Brassica oleracea Bo7g117480 I 0.644
Bra011623 Brassica rapa Bra011623 I 0.644
BRADI2G53390 Brachypodium distachyon BRADI2G53390 I 0.644
F775_11596 Aegilops tauschii F775_11596 I 0.644
GLYMA02G10410 Glycine max GLYMA02G10410 I 0.644
GLYMA10G43580 Glycine max GLYMA10G43580 I 0.644
GLYMA18G52491 Glycine max GLYMA18G52491 I 0.644
GLYMA20G23220 Glycine max GLYMA20G23220 I 0.644
GSMUA_Achr1G17980_001 Musa acuminata GSMUA_Achr1G17980_001 I 0.644
GSMUA_Achr5G11080_001 Musa acuminata GSMUA_Achr5G11080_001 I 0.644
LPERR01G30370 Leersia perrieri LPERR01G30370 I 0.644
MLOC_56124 Hordeum vulgare MLOC_56124 I 0.644
MTR_1g115315 Medicago truncatula MTR_1g115315 I 0.644
OB01G44030 Oryza brachyantha OB01G44030 I 0.644
OBART01G35170 Oryza barthii OBART01G35170 I 0.644
OLONG_016784 Oryza longistaminata OLONG_016784 I 0.644
OMERI01G32310 Oryza meridionalis OMERI01G32310 I 0.644
ONIVA01G40180 Oryza nivara ONIVA01G40180 I 0.644
OPUNC01G34140 Oryza punctata OPUNC01G34140 I 0.644
ORGLA01G0290300 Oryza glaberrima ORGLA01G0290300 I 0.644
ORUFI01G38500 Oryza rufipogon ORUFI01G38500 I 0.644
WOX8 Oryza sativa OS01G0818400 I 0.644
PGSC0003DMG400001565 Solanum tuberosum PGSC0003DMG400001565 I 0.644
HB-4 Populus trichocarpa POPTR_0005s10480 I 0.644
PRUPE_ppa021400mg Prunus persica PRUPE_ppa021400mg I 0.644
Solyc02g082670.2 Solanum lycopersicum Solyc02g082670.2 I 0.644
TCM_000062 Theobroma cacao TCM_000062 I 0.644
Traes_3AL_D0053C177 Triticum aestivum Traes_3AL_D0053C177 I 0.644
Traes_3AS_9079D6B71 Triticum aestivum Traes_3AS_9079D6B71 I 0.644
TRAES3BF057600060CFD_g Triticum aestivum TRAES3BF057600060CFD_g I 0.644
TRAES3BF091200090CFD_g Triticum aestivum TRAES3BF091200090CFD_g I 0.644
TRAES3BF091200100CFD_g Triticum aestivum TRAES3BF091200100CFD_g I 0.644
Traes_3DL_6B1815F7D Triticum aestivum Traes_3DL_6B1815F7D I 0.644
Traes_3DS_97BBFFA03 Triticum aestivum Traes_3DS_97BBFFA03 I 0.644
TRIUR3_23636 Triticum urartu TRIUR3_23636 I 0.644
VIT_18s0122g01140 Vitis vinifera VIT_18s0122g01140 I 0.644
Ca_18623 Cicer arietinum Ca_18623 I 0.644
Cla009089 Citrullus lanatus Cla009089 I 0.644
Pm026793 Prunus mume Pm026793 I 0.644
29830.m001452 Ricinus communis 29830.m001452 I 0.644
cassava23423.valid.m1 Manihot esculenta cassava23423.valid.m1 I 0.644
Cucsa.323040 Cucumis sativus Cucsa.323040 I 0.644
mgf006573m Mimulus guttatus mgf006573m I 0.644
Bostr.7867s1413 Boechera stricta Bostr.7867s1413 I 0.644
Cagra.2350s0096 Capsella grandiflora Cagra.2350s0096 I 0.644
Carubv10005217m.g Capsella rubella Carubv10005217m.g I 0.644
Ciclev10026199m.g Citrus clementina Ciclev10026199m.g I 0.644
evm.TU.supercontig_6.368 Carica papaya evm.TU.supercontig_6.368 I 0.644
gene13035-v1.0-hybrid Fragaria vesca gene13035-v1.0-hybrid I 0.644
Gorai.001G199200 Gossypium raimondii Gorai.001G199200 I 0.644
Lus10040447.g Linum usitatissimum Lus10040447.g I 0.644
MDP0000224466 Malus domestica MDP0000224466 I 0.644
MDP0000304650 Malus domestica MDP0000304650 I 0.644
MDP0000316517 Malus domestica MDP0000316517 I 0.644
MDP0000851699 Malus domestica MDP0000851699 I 0.644
orange1.1g022516m.g Citrus sinensis orange1.1g022516m.g I 0.644
SapurV1A.1240s0080 Salix purpurea SapurV1A.1240s0080 I 0.644
chr1.CM0113.620.nc Lotus japonicus chr1.CM0113.620.nc I 0.644
AMTR_s00044p00155390 Amborella trichopoda AMTR_s00044p00155390 I 0.642
Bra017720 Brassica rapa Bra017720 I 0.642
HB-4 Arabidopsis lyrata scaffold_700564.1 I 0.642
SELMODRAFT_404178 Selaginella moellendorffii SELMODRAFT_404178 I 0.642
SELMODRAFT_407157 Selaginella moellendorffii SELMODRAFT_407157 I 0.642
gw1.224.39.1 Physcomitrella patens gw1.224.39.1 I 0.642
gw1.29.10.1 Physcomitrella patens gw1.29.10.1 I 0.642
Aquca_007_00901 Aquilegia coerulea Aquca_007_00901 I 0.642
Lus10016026.g Linum usitatissimum Lus10016026.g I 0.642
Thhalv10025989m.g Eutrema salsugineum Thhalv10025989m.g I 0.642
GSMUA_Achr7G04050_001 Musa acuminata GSMUA_Achr7G04050_001 I 0.641
POPTR_0002s00980 Populus trichocarpa POPTR_0002s00980 I 0.640
SapurV1A.0016s0590 Salix purpurea SapurV1A.0016s0590 I 0.640
chr5.CM0180.70.nc Lotus japonicus chr5.CM0180.70.nc I 0.639
PDK_20s1408301g001 Phoenix dactylifera PDK_20s1408301g001 I 0.639
POPTR_0005s27410 Populus trichocarpa POPTR_0005s27410 I 0.637
SapurV1A.0266s0300 Salix purpurea SapurV1A.0266s0300 I 0.637
Cla023819 Citrullus lanatus Cla023819 I 0.636
Cucsa.272210 Cucumis sativus Cucsa.272210 I 0.636
PK14252.1 Cannabis sativa PK14252.1 I 0.635
MTR_7g023810 Medicago truncatula MTR_7g023810 I 0.633
Ca_19383 Cicer arietinum Ca_19383 I 0.633
Ca_19386 Cicer arietinum Ca_19386 I 0.633
Lus10023561.g Linum usitatissimum Lus10023561.g I 0.633
LjT41B11.90.nd Lotus japonicus LjT41B11.90.nd I 0.633
VIT_04s0044g00150 Vitis vinifera VIT_04s0044g00150 I 0.632
PK07880.1 Cannabis sativa PK07880.1 I 0.632
GRMZM2G038252 Zea mays GRMZM2G038252 D 0.631
GRMZM2G069274 Zea mays GRMZM2G069274 I 0.631
GRMZM5G805026 Zea mays GRMZM5G805026 I 0.631
GSMUA_Achr10G07260_001 Musa acuminata GSMUA_Achr10G07260_001 I 0.631
Sb03g038080 Sorghum bicolor Sb03g038080 I 0.631
Si002508m.g Setaria italica Si002508m.g I 0.631
evm.TU.supercontig_26.173 Carica papaya evm.TU.supercontig_26.173 I 0.631
Pavir.Ea03245 Panicum virgatum Pavir.Ea03245 I 0.631
Pavir.Eb03552 Panicum virgatum Pavir.Eb03552 I 0.631
fgenesh1_pg.scaffold_217000007 Physcomitrella patens fgenesh1_pg.scaffold_217000007 I 0.625
30170.m014389 Ricinus communis 30170.m014389 I 0.611
cassava39214.m1 Manihot esculenta cassava39214.m1 I 0.611
EuGene.0600010372 Micromonas sp RCC299 EuGene.0600010372 I 0.610
Bo3g155580 Brassica oleracea Bo3g155580 I 0.606
Bra010531 Brassica rapa Bra010531 I 0.606
Aquca_015_00333 Aquilegia coerulea Aquca_015_00333 I 0.606
GSMUA_Achr3G14840_001 Musa acuminata GSMUA_Achr3G14840_001 I 0.604
SELMODRAFT_438787 Selaginella moellendorffii SELMODRAFT_438787 I 0.603
SELMODRAFT_451355 Selaginella moellendorffii SELMODRAFT_451355 I 0.603