chr5.CM0180.70.nc (Lotus japonicus)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 chr5.CM0180.70.nc T230823_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GRMZM2G038252
M02137_2.00 		Zea mays
HTRATTGV
BCAATYAD		 PBM
Weirauch et al.(2014)
pTH6141 		0.788 0.825
WOX13
M02049_2.00 		Arabidopsis thaliana
YTGATTGA
TCAATCAR		 PBM
Weirauch et al.(2014)
pTH6461 		0.788 0.754
WOX13
M00866_2.00 		Arabidopsis thaliana
NNTGATTGAN
NTCAATCANN		 PBM
Franco-Zorrilla et al.(2014)
WOX13 		0.788 0.754
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
chr5.CM0180.70.nc Homeodomain 93 154

Links

Other Homeodomain family TFs
Other Lotus japonicus TFs

244 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Ca_19383 Cicer arietinum Ca_19383 I 0.827
Ca_19386 Cicer arietinum Ca_19386 I 0.827
LjT41B11.90.nd Lotus japonicus LjT41B11.90.nd I 0.823
MTR_1g115315 Medicago truncatula MTR_1g115315 I 0.821
Ca_18623 Cicer arietinum Ca_18623 I 0.821
GLYMA10G43580 Glycine max GLYMA10G43580 I 0.820
GLYMA20G23220 Glycine max GLYMA20G23220 I 0.820
VIT_18s0122g01140 Vitis vinifera VIT_18s0122g01140 I 0.820
Cucsa.323040 Cucumis sativus Cucsa.323040 I 0.820
Cla009089 Citrullus lanatus Cla009089 I 0.819
Ca_04823 Cicer arietinum Ca_04823 I 0.817
GLYMA02G10410 Glycine max GLYMA02G10410 I 0.816
GLYMA18G52491 Glycine max GLYMA18G52491 I 0.816
MTR_3g115620 Medicago truncatula MTR_3g115620 I 0.816
PK14252.1 Cannabis sativa PK14252.1 I 0.816
GSMUA_Achr4G25530_001 Musa acuminata GSMUA_Achr4G25530_001 I 0.815
MDP0000224466 Malus domestica MDP0000224466 I 0.810
MDP0000851699 Malus domestica MDP0000851699 I 0.810
POPTR_0002s00980 Populus trichocarpa POPTR_0002s00980 I 0.805
SapurV1A.0016s0590 Salix purpurea SapurV1A.0016s0590 I 0.805
POPTR_0005s27410 Populus trichocarpa POPTR_0005s27410 I 0.803
SapurV1A.0266s0300 Salix purpurea SapurV1A.0266s0300 I 0.803
Lus10016026.g Linum usitatissimum Lus10016026.g I 0.802
cassava39214.m1 Manihot esculenta cassava39214.m1 I 0.801
VIT_04s0044g00150 Vitis vinifera VIT_04s0044g00150 I 0.800
PK07880.1 Cannabis sativa PK07880.1 I 0.800
30170.m014389 Ricinus communis 30170.m014389 I 0.799
Thhalv10008824m.g Eutrema salsugineum Thhalv10008824m.g I 0.798
chr1.CM0113.620.nc Lotus japonicus chr1.CM0113.620.nc I 0.790
evm.TU.supercontig_26.173 Carica papaya evm.TU.supercontig_26.173 I 0.789
WOX13 Arabidopsis thaliana AT4G35550 D 0.788
BGIOSGA004695 Oryza indica BGIOSGA004695 I 0.788
Bo1g006370 Brassica oleracea Bo1g006370 I 0.788
Bo7g117480 Brassica oleracea Bo7g117480 I 0.788
Bra011623 Brassica rapa Bra011623 I 0.788
GRMZM2G038252 Zea mays GRMZM2G038252 D 0.788
GRMZM2G069274 Zea mays GRMZM2G069274 I 0.788
GRMZM5G805026 Zea mays GRMZM5G805026 I 0.788
LPERR01G30370 Leersia perrieri LPERR01G30370 I 0.788
OB01G44030 Oryza brachyantha OB01G44030 I 0.788
OBART01G35170 Oryza barthii OBART01G35170 I 0.788
OLONG_016784 Oryza longistaminata OLONG_016784 I 0.788
OMERI01G32310 Oryza meridionalis OMERI01G32310 I 0.788
ONIVA01G40180 Oryza nivara ONIVA01G40180 I 0.788
OPUNC01G34140 Oryza punctata OPUNC01G34140 I 0.788
ORGLA01G0290300 Oryza glaberrima ORGLA01G0290300 I 0.788
ORUFI01G38500 Oryza rufipogon ORUFI01G38500 I 0.788
WOX8 Oryza sativa OS01G0818400 I 0.788
HB-4 Populus trichocarpa POPTR_0005s10480 I 0.788
Sb03g038080 Sorghum bicolor Sb03g038080 I 0.788
SELMODRAFT_404178 Selaginella moellendorffii SELMODRAFT_404178 I 0.788
SELMODRAFT_407157 Selaginella moellendorffii SELMODRAFT_407157 I 0.788
Si002508m.g Setaria italica Si002508m.g I 0.788
TCM_000062 Theobroma cacao TCM_000062 I 0.788
29830.m001452 Ricinus communis 29830.m001452 I 0.788
cassava23423.valid.m1 Manihot esculenta cassava23423.valid.m1 I 0.788
mgf006573m Mimulus guttatus mgf006573m I 0.788
Bostr.7867s1413 Boechera stricta Bostr.7867s1413 I 0.788
Cagra.2350s0096 Capsella grandiflora Cagra.2350s0096 I 0.788
Carubv10005217m.g Capsella rubella Carubv10005217m.g I 0.788
Ciclev10026199m.g Citrus clementina Ciclev10026199m.g I 0.788
evm.TU.supercontig_6.368 Carica papaya evm.TU.supercontig_6.368 I 0.788
gene13035-v1.0-hybrid Fragaria vesca gene13035-v1.0-hybrid I 0.788
Gorai.001G199200 Gossypium raimondii Gorai.001G199200 I 0.788
orange1.1g022516m.g Citrus sinensis orange1.1g022516m.g I 0.788
Pavir.Ea03245 Panicum virgatum Pavir.Ea03245 I 0.788
Pavir.Eb03552 Panicum virgatum Pavir.Eb03552 I 0.788
SapurV1A.1240s0080 Salix purpurea SapurV1A.1240s0080 I 0.788
PGSC0003DMG400001565 Solanum tuberosum PGSC0003DMG400001565 I 0.787
PRUPE_ppa021400mg Prunus persica PRUPE_ppa021400mg I 0.787
Solyc02g082670.2 Solanum lycopersicum Solyc02g082670.2 I 0.787
Pm026793 Prunus mume Pm026793 I 0.787
Lus10023561.g Linum usitatissimum Lus10023561.g I 0.787
Lus10040447.g Linum usitatissimum Lus10040447.g I 0.787
MDP0000316517 Malus domestica MDP0000316517 I 0.787
Bra017720 Brassica rapa Bra017720 I 0.786
HB-4 Arabidopsis lyrata scaffold_700564.1 I 0.786
Aquca_007_00901 Aquilegia coerulea Aquca_007_00901 I 0.786
Bostr.7128s0661 Boechera stricta Bostr.7128s0661 I 0.786
Thhalv10025989m.g Eutrema salsugineum Thhalv10025989m.g I 0.786
BRADI2G53390 Brachypodium distachyon BRADI2G53390 I 0.784
F775_11596 Aegilops tauschii F775_11596 I 0.784
GLYMA04G01830 Glycine max GLYMA04G01830 I 0.784
GLYMA06G01940 Glycine max GLYMA06G01940 I 0.784
GSMUA_Achr10G07260_001 Musa acuminata GSMUA_Achr10G07260_001 I 0.784
GSMUA_Achr1G17980_001 Musa acuminata GSMUA_Achr1G17980_001 I 0.784
GSMUA_Achr5G11080_001 Musa acuminata GSMUA_Achr5G11080_001 I 0.784
GSMUA_AchrUn_randomG18610_001 Musa acuminata GSMUA_AchrUn_randomG18610_001 I 0.784
MLOC_56124 Hordeum vulgare MLOC_56124 I 0.784
Traes_3AL_D0053C177 Triticum aestivum Traes_3AL_D0053C177 I 0.784
TRAES3BF057600060CFD_g Triticum aestivum TRAES3BF057600060CFD_g I 0.784
TRAES3BF091200090CFD_g Triticum aestivum TRAES3BF091200090CFD_g I 0.784
TRAES3BF091200100CFD_g Triticum aestivum TRAES3BF091200100CFD_g I 0.784
Traes_3DL_6B1815F7D Triticum aestivum Traes_3DL_6B1815F7D I 0.784
Traes_3DS_97BBFFA03 Triticum aestivum Traes_3DS_97BBFFA03 I 0.784
TRIUR3_23636 Triticum urartu TRIUR3_23636 I 0.784
Cla023819 Citrullus lanatus Cla023819 I 0.784
Cucsa.272210 Cucumis sativus Cucsa.272210 I 0.784
MDP0000304650 Malus domestica MDP0000304650 I 0.784
PDK_20s1408301g001 Phoenix dactylifera PDK_20s1408301g001 I 0.784
AMTR_s00044p00155390 Amborella trichopoda AMTR_s00044p00155390 I 0.783
PRUPE_ppa011225mg Prunus persica PRUPE_ppa011225mg I 0.783
Pm022951 Prunus mume Pm022951 I 0.783
Eucgr.I02222 Eucalyptus grandis Eucgr.I02222 I 0.783
Gorai.007G372000 Gossypium raimondii Gorai.007G372000 I 0.781
gene20491-v1.0-hybrid Fragaria vesca gene20491-v1.0-hybrid I 0.780
Gorai.003G002200 Gossypium raimondii Gorai.003G002200 I 0.778
Gorai.004G038300 Gossypium raimondii Gorai.004G038300 I 0.777
Aquca_015_00333 Aquilegia coerulea Aquca_015_00333 I 0.774
MTR_7g023810 Medicago truncatula MTR_7g023810 I 0.773
TCM_034409 Theobroma cacao TCM_034409 I 0.772
Thhalv10009917m.g Eutrema salsugineum Thhalv10009917m.g I 0.767
gw1.224.39.1 Physcomitrella patens gw1.224.39.1 I 0.766
gw1.29.10.1 Physcomitrella patens gw1.29.10.1 I 0.766
Traes_3AS_9079D6B71 Triticum aestivum Traes_3AS_9079D6B71 I 0.762
WOX14 Arabidopsis thaliana AT1G20700 I 0.756
Bo5g030590 Brassica oleracea Bo5g030590 I 0.755
Bra025839 Brassica rapa Bra025839 I 0.755
WOX14 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1001881 I 0.755
GSMUA_Achr7G04050_001 Musa acuminata GSMUA_Achr7G04050_001 I 0.755
Bostr.3717s0001 Boechera stricta Bostr.3717s0001 I 0.755
Cagra.6160s0025 Capsella grandiflora Cagra.6160s0025 I 0.755
Cagra.6160s0026 Capsella grandiflora Cagra.6160s0026 I 0.755
Carubv10010349m.g Capsella rubella Carubv10010349m.g I 0.755
Carubv10012447m.g Capsella rubella Carubv10012447m.g I 0.755
Ciclev10002354m.g Citrus clementina Ciclev10002354m.g I 0.755
orange1.1g026809m.g Citrus sinensis orange1.1g026809m.g I 0.755
Bo09314s010 Brassica oleracea Bo09314s010 I 0.753
Bo7g061410 Brassica oleracea Bo7g061410 I 0.753
fgenesh1_pg.scaffold_217000007 Physcomitrella patens fgenesh1_pg.scaffold_217000007 I 0.753
WOX10 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1001761 I 0.751
Bo3g155580 Brassica oleracea Bo3g155580 I 0.750
Bra010531 Brassica rapa Bra010531 I 0.750
GSMUA_Achr3G14840_001 Musa acuminata GSMUA_Achr3G14840_001 I 0.744
VIT_04s0044g00160 Vitis vinifera VIT_04s0044g00160 I 0.744
WOX10 Arabidopsis thaliana AT1G20710 I 0.736
GSMUA_Achr4G29470_001 Musa acuminata GSMUA_Achr4G29470_001 I 0.721
SELMODRAFT_438787 Selaginella moellendorffii SELMODRAFT_438787 I 0.720
SELMODRAFT_451355 Selaginella moellendorffii SELMODRAFT_451355 I 0.720
estExt_fgenesh1_pg.C_90244 Micromonas pusilla estExt_fgenesh1_pg.C_90244 I 0.718
EuGene.0600010372 Micromonas sp RCC299 EuGene.0600010372 I 0.689
SELMODRAFT_451353 Selaginella moellendorffii SELMODRAFT_451353 I 0.679
SELMODRAFT_84885 Selaginella moellendorffii SELMODRAFT_84885 I 0.676
SELMODRAFT_115439 Selaginella moellendorffii SELMODRAFT_115439 I 0.659
SELMODRAFT_123325 Selaginella moellendorffii SELMODRAFT_123325 I 0.659
evm.TU.supercontig_65.159 Carica papaya evm.TU.supercontig_65.159 I 0.647
Lus10018011.g Linum usitatissimum Lus10018011.g I 0.641
Lus10042007.g Linum usitatissimum Lus10042007.g I 0.641
Bra012245 Brassica rapa Bra012245 I 0.639
Cla019215 Citrullus lanatus Cla019215 I 0.637
Cucsa.111520 Cucumis sativus Cucsa.111520 I 0.637
WOX2 Oryza indica BGIOSGA019069 I 0.628
LPERR05G01200 Leersia perrieri LPERR05G01200 I 0.628
OBART05G01300 Oryza barthii OBART05G01300 I 0.628
OGLUM05G01320 Oryza glumaepatula OGLUM05G01320 I 0.628
OMERI05G01360 Oryza meridionalis OMERI05G01360 I 0.628
ONIVA05G01350 Oryza nivara ONIVA05G01350 I 0.628
ORUFI05G01360 Oryza rufipogon ORUFI05G01360 I 0.628
WOX2 Oryza sativa OS05G0118700 I 0.628
PRUPE_ppa019793mg Prunus persica PRUPE_ppa019793mg I 0.628
Pm000753 Prunus mume Pm000753 I 0.628
gene14025-v1.0-hybrid Fragaria vesca gene14025-v1.0-hybrid I 0.628
MDP0000163159 Malus domestica MDP0000163159 I 0.628
MDP0000293200 Malus domestica MDP0000293200 I 0.628
OPUNC05G01220 Oryza punctata OPUNC05G01220 I 0.624
GSMUA_Achr5G29220_001 Musa acuminata GSMUA_Achr5G29220_001 I 0.622
PGSC0003DMG400006609 Solanum tuberosum PGSC0003DMG400006609 I 0.615
PGSC0003DMG400025358 Solanum tuberosum PGSC0003DMG400025358 I 0.615
Solyc11g072770.1 Solanum lycopersicum Solyc11g072770.1 I 0.615
WOX5 Arabidopsis thaliana AT3G11260 I 0.614
WOX1 Arabidopsis thaliana AT3G18010 I 0.614
Bo3g071360 Brassica oleracea Bo3g071360 I 0.614
Bo5g121370 Brassica oleracea Bo5g121370 I 0.614
Bo5g136700 Brassica oleracea Bo5g136700 I 0.614
Bra001694 Brassica rapa Bra001694 I 0.614
Bra022267 Brassica rapa Bra022267 I 0.614
fgenesh2_kg.143__1__AT3G18010.1 Arabidopsis lyrata fgenesh2_kg.143__1__AT3G18010.1 I 0.614
WOX5 Arabidopsis lyrata fgenesh2_kg.3__1167__AT3G11260.1 I 0.614
fgenesh2_kg.3__1989__AT3G18010.1 Arabidopsis lyrata fgenesh2_kg.3__1989__AT3G18010.1 I 0.614
Bostr.19424s0870 Boechera stricta Bostr.19424s0870 I 0.614
Bostr.19424s1059 Boechera stricta Bostr.19424s1059 I 0.614
Cagra.0456s0008 Capsella grandiflora Cagra.0456s0008 I 0.614
Cagra.1655s0045 Capsella grandiflora Cagra.1655s0045 I 0.614
Carubv10013929m.g Capsella rubella Carubv10013929m.g I 0.614
Carubv10016169m.g Capsella rubella Carubv10016169m.g I 0.614
Thhalv10022017m.g Eutrema salsugineum Thhalv10022017m.g I 0.614
Thhalv10022042m.g Eutrema salsugineum Thhalv10022042m.g I 0.614
WOX1 Vitis vinifera VIT_01s0011g05020 I 0.613
mgf021746m Mimulus guttatus mgf021746m I 0.613
Bo2g013980 Brassica oleracea Bo2g013980 I 0.612
Bo2g062660 Brassica oleracea Bo2g062660 I 0.612
PGSC0003DMG400005670 Solanum tuberosum PGSC0003DMG400005670 I 0.611
Solyc03g118770.2 Solanum lycopersicum Solyc03g118770.2 I 0.611
TCM_010888 Theobroma cacao TCM_010888 I 0.611
29816.m000691 Ricinus communis 29816.m000691 I 0.611
cassava32199.m1 Manihot esculenta cassava32199.m1 I 0.611
Aquca_091_00003 Aquilegia coerulea Aquca_091_00003 I 0.611
Ciclev10017657m.g Citrus clementina Ciclev10017657m.g I 0.611
Gorai.002G178400 Gossypium raimondii Gorai.002G178400 I 0.611
orange1.1g035594m.g Citrus sinensis orange1.1g035594m.g I 0.611
AMTR_s00010p00122680 Amborella trichopoda AMTR_s00010p00122680 I 0.610
GLYMA05G33850 Glycine max GLYMA05G33850 I 0.610
GLYMA07G11372 Glycine max GLYMA07G11372 I 0.610
GLYMA08G05831 Glycine max GLYMA08G05831 I 0.610
GLYMA09G30831 Glycine max GLYMA09G30831 I 0.610
MTR_8g107210 Medicago truncatula MTR_8g107210 I 0.610
POPTR_0012s04510 Populus trichocarpa POPTR_0012s04510 I 0.610
POPTR_0015s04520 Populus trichocarpa POPTR_0015s04520 I 0.610
PRUPE_ppa017419mg Prunus persica PRUPE_ppa017419mg I 0.610
TCM_012755 Theobroma cacao TCM_012755 I 0.610
VIT_17s0000g02460 Vitis vinifera VIT_17s0000g02460 I 0.610
Ca_10352 Cicer arietinum Ca_10352 I 0.610
Cla018739 Citrullus lanatus Cla018739 I 0.610
Pm025084 Prunus mume Pm025084 I 0.610
28102.m000106 Ricinus communis 28102.m000106 I 0.610
cassava16590.m1 Manihot esculenta cassava16590.m1 I 0.610
cassava41581.m1 Manihot esculenta cassava41581.m1 I 0.610
Cucsa.121900 Cucumis sativus Cucsa.121900 I 0.610
Ciclev10008783m.g Citrus clementina Ciclev10008783m.g I 0.610
Eucgr.B00945 Eucalyptus grandis Eucgr.B00945 I 0.610
evm.TU.supercontig_3.402 Carica papaya evm.TU.supercontig_3.402 I 0.610
gene09389-v1.0-hybrid Fragaria vesca gene09389-v1.0-hybrid I 0.610
Gorai.008G289800 Gossypium raimondii Gorai.008G289800 I 0.610
MDP0000144307 Malus domestica MDP0000144307 I 0.610
MDP0000219162 Malus domestica MDP0000219162 I 0.610
MDP0000445859 Malus domestica MDP0000445859 I 0.610
orange1.1g043602m.g Citrus sinensis orange1.1g043602m.g I 0.610
SapurV1A.0357s0040 Salix purpurea SapurV1A.0357s0040 I 0.610
SapurV1A.0406s0010 Salix purpurea SapurV1A.0406s0010 I 0.610
SapurV1A.0718s0010 Salix purpurea SapurV1A.0718s0010 I 0.610
PK07906.1 Cannabis sativa PK07906.1 I 0.610
chr4.CM0042.2350.nc Lotus japonicus chr4.CM0042.2350.nc I 0.610
LjSGA_059316.1 Lotus japonicus LjSGA_059316.1 I 0.610
LjSGA_115909.1 Lotus japonicus LjSGA_115909.1 I 0.610
WOX1 Populus trichocarpa POPTR_0010s12150 I 0.606
Si004427m.g Setaria italica Si004427m.g I 0.606
SapurV1A.0351s0200 Salix purpurea SapurV1A.0351s0200 I 0.606
SapurV1A.2168s0010 Salix purpurea SapurV1A.2168s0010 I 0.606
GLYMA07G34425 Glycine max GLYMA07G34425 I 0.603
GLYMA20G02161 Glycine max GLYMA20G02161 I 0.603
MTR_4g084550 Medicago truncatula MTR_4g084550 I 0.603
Ca_06508 Cicer arietinum Ca_06508 I 0.603
SELMODRAFT_417553 Selaginella moellendorffii SELMODRAFT_417553 I 0.602
SELMODRAFT_419270 Selaginella moellendorffii SELMODRAFT_419270 I 0.602