Pavir.J39623 (Panicum virgatum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Pavir.J39623 T229376_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
KNOX3_HORVU
M10790_2.00 		Hordeum vulgare Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$KNOX3_01 		0.626 0.614
KNAT6
M02037_2.00 		Arabidopsis thaliana
NNWGACNNNN
NNNNGTCWNN		 PBM
Weirauch et al.(2014)
pTH7296 		0.606 0.614
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J39623.1.p Homeodomain 21 81

Links

Other Homeodomain family TFs
Other Panicum virgatum TFs

283 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_05292 Aegilops tauschii F775_05292 I 0.607
F775_14143 Aegilops tauschii F775_14143 I 0.606
F775_31062 Aegilops tauschii F775_31062 I 0.626
F775_31450 Aegilops tauschii F775_31450 I 0.634
AMTR_s00085p00165180 Amborella trichopoda AMTR_s00085p00165180 I 0.606
AMTR_s00123p00122830 Amborella trichopoda AMTR_s00123p00122830 I 0.638
Aquca_002_00078 Aquilegia coerulea Aquca_002_00078 I 0.606
Aquca_012_00046 Aquilegia coerulea Aquca_012_00046 I 0.638
Aquca_032_00056 Aquilegia coerulea Aquca_032_00056 I 0.606
Aquca_133_00021 Aquilegia coerulea Aquca_133_00021 I 0.606
STM Arabidopsis lyrata fgenesh1_pg.C_scaffold_2000245 I 0.638
KNAT6 Arabidopsis lyrata fgenesh2_kg.1__2553__AT1G23380.2 I 0.606
KNAT2 Arabidopsis lyrata fgenesh2_kg.2__1305__AT1G70510.1 I 0.618
KNAT6 Arabidopsis thaliana AT1G23380 D 0.606
STM Arabidopsis thaliana AT1G62360 I 0.638
KNAT2 Arabidopsis thaliana AT1G70510 I 0.618
Bostr.12659s0199 Boechera stricta Bostr.12659s0199 I 0.606
Bostr.22157s0102 Boechera stricta Bostr.22157s0102 I 0.638
BRADI1G07247 Brachypodium distachyon BRADI1G07247 I 0.607
BRADI1G12677 Brachypodium distachyon BRADI1G12677 I 0.602
BRADI1G57607 Brachypodium distachyon BRADI1G57607 I 0.606
BRADI2G11540 Brachypodium distachyon BRADI2G11540 I 0.634
BRADI2G38390 Brachypodium distachyon BRADI2G38390 I 0.634
Bo01061s030 Brassica oleracea Bo01061s030 I 0.865
Bo2g068250 Brassica oleracea Bo2g068250 I 0.618
Bo5g039530 Brassica oleracea Bo5g039530 I 0.606
Bo8g073790 Brassica oleracea Bo8g073790 I 0.606
Bo9g037420 Brassica oleracea Bo9g037420 I 0.638
Bra007920 Brassica rapa Bra007920 I 0.618
Bra016348 Brassica rapa Bra016348 I 0.606
Bra024591 Brassica rapa Bra024591 I 0.606
Bra027050 Brassica rapa Bra027050 I 0.638
PK02271.1 Cannabis sativa PK02271.1 I 0.686
PK12151.1 Cannabis sativa PK12151.1 I 0.606
PK16587.1 Cannabis sativa PK16587.1 I 0.638
PK26828.1 Cannabis sativa PK26828.1 I 0.602
Cagra.0077s0011 Capsella grandiflora Cagra.0077s0011 I 0.638
Cagra.0605s0071 Capsella grandiflora Cagra.0605s0071 I 0.606
Cagra.1777s0019 Capsella grandiflora Cagra.1777s0019 I 0.614
Carubv10011119m.g Capsella rubella Carubv10011119m.g I 0.606
Carubv10022064m.g Capsella rubella Carubv10022064m.g I 0.614
Carubv10022235m.g Capsella rubella Carubv10022235m.g I 0.638
evm.TU.supercontig_152.56 Carica papaya evm.TU.supercontig_152.56 I 0.638
evm.TU.supercontig_29.29 Carica papaya evm.TU.supercontig_29.29 I 0.771
evm.TU.supercontig_48.162 Carica papaya evm.TU.supercontig_48.162 I 0.634
evm.TU.supercontig_69.81 Carica papaya evm.TU.supercontig_69.81 I 0.606
Ca_00668 Cicer arietinum Ca_00668 I 0.638
Ca_03625 Cicer arietinum Ca_03625 I 0.634
Ca_09202 Cicer arietinum Ca_09202 I 0.606
Ca_18152 Cicer arietinum Ca_18152 I 0.606
Cla010234 Citrullus lanatus Cla010234 I 0.606
Cla011684 Citrullus lanatus Cla011684 I 0.686
Cla014651 Citrullus lanatus Cla014651 I 0.638
Cla023003 Citrullus lanatus Cla023003 I 0.606
Ciclev10001508m.g Citrus clementina Ciclev10001508m.g I 0.606
Ciclev10015581m.g Citrus clementina Ciclev10015581m.g I 0.638
Ciclev10015818m.g Citrus clementina Ciclev10015818m.g I 0.602
Ciclev10022781m.g Citrus clementina Ciclev10022781m.g I 0.602
Ciclev10033524m.g Citrus clementina Ciclev10033524m.g I 0.606
orange1.1g024428m.g Citrus sinensis orange1.1g024428m.g I 0.629
orange1.1g029411m.g Citrus sinensis orange1.1g029411m.g I 0.602
orange1.1g038569m.g Citrus sinensis orange1.1g038569m.g I 0.602
orange1.1g045160m.g Citrus sinensis orange1.1g045160m.g I 0.606
Cucsa.044950 Cucumis sativus Cucsa.044950 I 0.638
Cucsa.302660 Cucumis sativus Cucsa.302660 I 0.771
Cucsa.353140 Cucumis sativus Cucsa.353140 I 0.606
Eucgr.D01364 Eucalyptus grandis Eucgr.D01364 I 0.638
Eucgr.F00106 Eucalyptus grandis Eucgr.F00106 I 0.606
Eucgr.H02544 Eucalyptus grandis Eucgr.H02544 I 0.606
Thhalv10009009m.g Eutrema salsugineum Thhalv10009009m.g I 0.606
Thhalv10019501m.g Eutrema salsugineum Thhalv10019501m.g I 0.618
Thhalv10023520m.g Eutrema salsugineum Thhalv10023520m.g I 0.638
gene03606-v1.0-hybrid Fragaria vesca gene03606-v1.0-hybrid I 0.606
gene19507-v1.0-hybrid Fragaria vesca gene19507-v1.0-hybrid I 0.638
gene32207-v1.0-hybrid Fragaria vesca gene32207-v1.0-hybrid I 0.606
gene32356-v1.0-hybrid Fragaria vesca gene32356-v1.0-hybrid I 0.771
GLYMA01G03450 Glycine max GLYMA01G03450 I 0.606
GLYMA02G04190 Glycine max GLYMA02G04190 I 0.606
GLYMA07G39350 Glycine max GLYMA07G39350 I 0.638
GLYMA08G39170 Glycine max GLYMA08G39170 I 0.606
GLYMA09G01000 Glycine max GLYMA09G01000 I 0.638
GLYMA10G28820 Glycine max GLYMA10G28820 I 0.634
GLYMA15G11850 Glycine max GLYMA15G11850 I 0.638
GLYMA17G01370 Glycine max GLYMA17G01370 I 0.638
GLYMA18G20293 Glycine max GLYMA18G20293 I 0.606
GLYMA19G41610 Glycine max GLYMA19G41610 I 0.603
GLYMA20G22986 Glycine max GLYMA20G22986 I 0.634
Gorai.003G163800 Gossypium raimondii Gorai.003G163800 I 0.686
Gorai.004G206600 Gossypium raimondii Gorai.004G206600 I 0.686
Gorai.005G098100 Gossypium raimondii Gorai.005G098100 I 0.606
Gorai.005G180500 Gossypium raimondii Gorai.005G180500 I 0.606
Gorai.009G181500 Gossypium raimondii Gorai.009G181500 I 0.638
Gorai.009G223200 Gossypium raimondii Gorai.009G223200 I 0.606
Gorai.009G336900 Gossypium raimondii Gorai.009G336900 I 0.606
Gorai.010G029000 Gossypium raimondii Gorai.010G029000 I 0.606
Gorai.010G183800 Gossypium raimondii Gorai.010G183800 I 0.638
Gorai.011G011700 Gossypium raimondii Gorai.011G011700 I 0.638
KNOX3_HORVU Hordeum vulgare KNOX3_HORVU D 0.626
MLOC_11678 Hordeum vulgare MLOC_11678 I 0.606
MLOC_57232 Hordeum vulgare MLOC_57232 I 0.634
LPERR01G11670 Leersia perrieri LPERR01G11670 I 0.636
LPERR03G27340 Leersia perrieri LPERR03G27340 I 0.602
LPERR05G01890 Leersia perrieri LPERR05G01890 I 0.636
LPERR07G01870 Leersia perrieri LPERR07G01870 I 0.606
Lus10007245.g Linum usitatissimum Lus10007245.g I 0.606
Lus10024485.g Linum usitatissimum Lus10024485.g I 0.771
Lus10028244.g Linum usitatissimum Lus10028244.g I 0.606
Lus10029125.g Linum usitatissimum Lus10029125.g I 0.606
Lus10030003.g Linum usitatissimum Lus10030003.g I 0.606
chr1.LjT33H07.80.nd Lotus japonicus chr1.LjT33H07.80.nd I 0.867
chr2.CM0304.440.nc Lotus japonicus chr2.CM0304.440.nc I 0.686
chr4.CM0288.890.nd Lotus japonicus chr4.CM0288.890.nd I 0.638
LjSGA_010170.1 Lotus japonicus LjSGA_010170.1 I 0.606
LjSGA_022785.1 Lotus japonicus LjSGA_022785.1 I 0.634
LjT03D14.220.nd Lotus japonicus LjT03D14.220.nd I 0.638
MDP0000136226 Malus domestica MDP0000136226 I 0.638
MDP0000231216 Malus domestica MDP0000231216 I 0.638
MDP0000252095 Malus domestica MDP0000252095 I 0.606
MDP0000254847 Malus domestica MDP0000254847 I 0.604
MDP0000280307 Malus domestica MDP0000280307 I 0.606
MDP0000294096 Malus domestica MDP0000294096 I 0.606
MDP0000313776 Malus domestica MDP0000313776 I 0.686
cassava17642.valid.m1 Manihot esculenta cassava17642.valid.m1 I 0.606
cassava19841.m1 Manihot esculenta cassava19841.m1 I 0.634
cassava22394.valid.m1 Manihot esculenta cassava22394.valid.m1 I 0.606
cassava27839.m1 Manihot esculenta cassava27839.m1 I 0.638
cassava30127.valid.m1 Manihot esculenta cassava30127.valid.m1 I 0.686
cassava35932.valid.m1 Manihot esculenta cassava35932.valid.m1 I 0.606
cassava7893.valid.m1 Manihot esculenta cassava7893.valid.m1 I 0.638
MTR_1g017080 Medicago truncatula MTR_1g017080 I 0.606
MTR_1g084060 Medicago truncatula MTR_1g084060 I 0.634
MTR_2g024390 Medicago truncatula MTR_2g024390 I 0.638
MTR_5g033720 Medicago truncatula MTR_5g033720 I 0.606
est_orfs.8_8268_4271518:3 Micromonas pusilla est_orfs.8_8268_4271518:3 I 0.699
EuGene.1100010071 Micromonas sp RCC299 EuGene.1100010071 I 0.640
mgf000149m Mimulus guttatus mgf000149m I 0.634
mgf002324m Mimulus guttatus mgf002324m I 0.674
mgf016504m Mimulus guttatus mgf016504m I 0.638
mgf017032m Mimulus guttatus mgf017032m I 0.638
mgf024741m Mimulus guttatus mgf024741m I 0.606
GSMUA_Achr10G28700_001 Musa acuminata GSMUA_Achr10G28700_001 I 0.607
GSMUA_Achr1G03660_001 Musa acuminata GSMUA_Achr1G03660_001 I 0.813
GSMUA_Achr2G13200_001 Musa acuminata GSMUA_Achr2G13200_001 I 0.606
GSMUA_Achr4G03120_001 Musa acuminata GSMUA_Achr4G03120_001 I 0.626
GSMUA_Achr4G28270_001 Musa acuminata GSMUA_Achr4G28270_001 I 0.606
GSMUA_Achr5G01960_001 Musa acuminata GSMUA_Achr5G01960_001 I 0.638
GSMUA_Achr7G27540_001 Musa acuminata GSMUA_Achr7G27540_001 I 0.626
OBART01G11630 Oryza barthii OBART01G11630 I 0.636
OBART03G01840 Oryza barthii OBART03G01840 I 0.865
OBART03G32710 Oryza barthii OBART03G32710 I 0.634
OBART05G02090 Oryza barthii OBART05G02090 I 0.636
OBART07G01880 Oryza barthii OBART07G01880 I 0.606
OB01G22470 Oryza brachyantha OB01G22470 I 0.636
OB03G11790 Oryza brachyantha OB03G11790 I 0.865
OB03G39780 Oryza brachyantha OB03G39780 I 0.602
OB07G11590 Oryza brachyantha OB07G11590 I 0.606
ORGLA01G0097800 Oryza glaberrima ORGLA01G0097800 I 0.636
ORGLA03G0296300 Oryza glaberrima ORGLA03G0296300 I 0.634
ORGLA05G0020500 Oryza glaberrima ORGLA05G0020500 I 0.636
ORGLA07G0017300 Oryza glaberrima ORGLA07G0017300 I 0.606
OGLUM01G14210 Oryza glumaepatula OGLUM01G14210 I 0.636
OGLUM03G32350 Oryza glumaepatula OGLUM03G32350 I 0.634
OGLUM05G02160 Oryza glumaepatula OGLUM05G02160 I 0.636
OGLUM07G01740 Oryza glumaepatula OGLUM07G01740 I 0.606
BGIOSGA003338 Oryza indica BGIOSGA003338 I 0.636
BGIOSGA009878 Oryza indica BGIOSGA009878 I 0.634
OSH71 Oryza indica BGIOSGA018883 I 0.636
OSH15 Oryza indica BGIOSGA025091 I 0.606
OLONG_001151 Oryza longistaminata OLONG_001151 I 0.626
OLONG_001153 Oryza longistaminata OLONG_001153 I 0.634
OLONG_012157 Oryza longistaminata OLONG_012157 I 0.606
OLONG_020200 Oryza longistaminata OLONG_020200 I 0.865
OMERI03G29440 Oryza meridionalis OMERI03G29440 I 0.634
OMERI05G02200 Oryza meridionalis OMERI05G02200 I 0.636
OMERI07G01180 Oryza meridionalis OMERI07G01180 I 0.606
ONIVA03G01480 Oryza nivara ONIVA03G01480 I 0.865
ONIVA03G34220 Oryza nivara ONIVA03G34220 I 0.634
ONIVA05G02030 Oryza nivara ONIVA05G02030 I 0.636
ONIVA07G00730 Oryza nivara ONIVA07G00730 I 0.606
OPUNC01G12460 Oryza punctata OPUNC01G12460 I 0.636
OPUNC03G29870 Oryza punctata OPUNC03G29870 I 0.634
OPUNC05G01700 Oryza punctata OPUNC05G01700 I 0.636
OPUNC07G02410 Oryza punctata OPUNC07G02410 I 0.606
ORUFI01G13730 Oryza rufipogon ORUFI01G13730 I 0.636
ORUFI03G01570 Oryza rufipogon ORUFI03G01570 I 0.865
ORUFI03G34080 Oryza rufipogon ORUFI03G34080 I 0.634
ORUFI05G02190 Oryza rufipogon ORUFI05G02190 I 0.636
ORUFI07G01770 Oryza rufipogon ORUFI07G01770 I 0.606
OSH6 Oryza sativa OS01G0302500 I 0.636
OSH71 Oryza sativa OS05G0129700 I 0.636
OSH15 Oryza sativa OS07G0129700 I 0.606
OSTLU_5313 Ostreococcus lucimarinus OSTLU_5313 I 0.667
fgenesh1_pm.chr_4_#_82 Ostreococcus RCC809 fgenesh1_pm.chr_4_#_82 I 0.657
fgenesh1_pg.C_Chr_04.0001000291 Ostreococcus tauri fgenesh1_pg.C_Chr_04.0001000291 I 0.667
Pavir.Ba03909 Panicum virgatum Pavir.Ba03909 I 0.606
Pavir.Bb00225 Panicum virgatum Pavir.Bb00225 I 0.606
Pavir.Ca00748 Panicum virgatum Pavir.Ca00748 I 0.636
Pavir.Ea00998 Panicum virgatum Pavir.Ea00998 I 0.634
Pavir.Eb01302 Panicum virgatum Pavir.Eb01302 I 0.634
Pavir.Ia00731 Panicum virgatum Pavir.Ia00731 I 0.634
Pavir.Ia00733 Panicum virgatum Pavir.Ia00733 I 0.626
Pavir.J00864 Panicum virgatum Pavir.J00864 I 0.626
Pavir.J02025 Panicum virgatum Pavir.J02025 I 0.634
Pavir.J06042 Panicum virgatum Pavir.J06042 I 0.636
Pavir.J30099 Panicum virgatum Pavir.J30099 I 0.606
PDK_20s1308201g001 Phoenix dactylifera PDK_20s1308201g001 I 0.638
PDK_20s1334792g001 Phoenix dactylifera PDK_20s1334792g001 I 0.606
PDK_20s1688611g001 Phoenix dactylifera PDK_20s1688611g001 I 0.606
e_gw1.235.24.1 Physcomitrella patens e_gw1.235.24.1 I 0.600
POPTR_0002s11400 Populus trichocarpa POPTR_0002s11400 I 0.606
POPTR_0004s00650 Populus trichocarpa POPTR_0004s00650 I 0.638
POPTR_0008s19290 Populus trichocarpa POPTR_0008s19290 I 0.606
POPTR_0010s05340 Populus trichocarpa POPTR_0010s05340 I 0.606
POPTR_0011s01590 Populus trichocarpa POPTR_0011s01590 I 0.638
POPTR_0015s09040 Populus trichocarpa POPTR_0015s09040 I 0.606
Pm006717 Prunus mume Pm006717 I 0.606
Pm006718 Prunus mume Pm006718 I 0.606
Pm009705 Prunus mume Pm009705 I 0.638
Pm023742 Prunus mume Pm023742 I 0.771
Pm028537 Prunus mume Pm028537 I 0.606
PRUPE_ppa008461mg Prunus persica PRUPE_ppa008461mg I 0.638
PRUPE_ppa009464mg Prunus persica PRUPE_ppa009464mg I 0.771
PRUPE_ppa013871mg Prunus persica PRUPE_ppa013871mg I 0.606
PRUPE_ppa019852mg Prunus persica PRUPE_ppa019852mg I 0.606
29631.m001056 Ricinus communis 29631.m001056 I 0.606
29842.m003531 Ricinus communis 29842.m003531 I 0.638
30128.m008910 Ricinus communis 30128.m008910 I 0.634
30147.m013923 Ricinus communis 30147.m013923 I 0.606
30170.m013647 Ricinus communis 30170.m013647 I 0.606
30190.m011101 Ricinus communis 30190.m011101 I 0.686
SapurV1A.0004s0390 Salix purpurea SapurV1A.0004s0390 I 0.606
SapurV1A.0067s0070 Salix purpurea SapurV1A.0067s0070 I 0.638
SapurV1A.0069s0110 Salix purpurea SapurV1A.0069s0110 I 0.606
SapurV1A.0449s0300 Salix purpurea SapurV1A.0449s0300 I 0.638
SapurV1A.4388s0020 Salix purpurea SapurV1A.4388s0020 I 0.638
SELMODRAFT_159366 Selaginella moellendorffii SELMODRAFT_159366 I 0.651
SELMODRAFT_415291 Selaginella moellendorffii SELMODRAFT_415291 I 0.602
SELMODRAFT_448401 Selaginella moellendorffii SELMODRAFT_448401 I 0.651
SELMODRAFT_451276 Selaginella moellendorffii SELMODRAFT_451276 I 0.602
Si003268m.g Setaria italica Si003268m.g I 0.634
Si023561m.g Setaria italica Si023561m.g I 0.636
Si031454m.g Setaria italica Si031454m.g I 0.606
Si036193m.g Setaria italica Si036193m.g I 0.603
Si036727m.g Setaria italica Si036727m.g I 0.571
Si037920m.g Setaria italica Si037920m.g I 0.626
Solyc02g081120.2 Solanum lycopersicum Solyc02g081120.2 I 0.638
Solyc05g005090.2 Solanum lycopersicum Solyc05g005090.2 I 0.602
Solyc08g080120.2 Solanum lycopersicum Solyc08g080120.2 I 0.686
PGSC0003DMG400013493 Solanum tuberosum PGSC0003DMG400013493 I 0.602
PGSC0003DMG400016711 Solanum tuberosum PGSC0003DMG400016711 I 0.638
PGSC0003DMG400022736 Solanum tuberosum PGSC0003DMG400022736 I 0.686
Sb01g009460 Sorghum bicolor Sb01g009460 I 0.603
Sb01g009480 Sorghum bicolor Sb01g009480 I 0.626
Sb02g002200 Sorghum bicolor Sb02g002200 I 0.606
Sb03g012480 Sorghum bicolor Sb03g012480 I 0.634
Sb09g002520 Sorghum bicolor Sb09g002520 I 0.636
TCM_010433 Theobroma cacao TCM_010433 I 0.606
TCM_012104 Theobroma cacao TCM_012104 I 0.606
TCM_016150 Theobroma cacao TCM_016150 I 0.686
TCM_026767 Theobroma cacao TCM_026767 I 0.634
TCM_030302 Theobroma cacao TCM_030302 I 0.638
TCM_034627 Theobroma cacao TCM_034627 I 0.606
Traes_1AS_1B1587F7D Triticum aestivum Traes_1AS_1B1587F7D I 0.634
Traes_1BS_2156D66E1 Triticum aestivum Traes_1BS_2156D66E1 I 0.634
Traes_1DS_543CC7DC9 Triticum aestivum Traes_1DS_543CC7DC9 I 0.634
Traes_2AL_E687AF1BE Triticum aestivum Traes_2AL_E687AF1BE I 0.606
Traes_2BL_921BF570C Triticum aestivum Traes_2BL_921BF570C I 0.606
Traes_2DL_0D933D88B Triticum aestivum Traes_2DL_0D933D88B I 0.606
Traes_5BL_B2792D532 Triticum aestivum Traes_5BL_B2792D532 I 0.607
Traes_5DL_5FD3B95C7 Triticum aestivum Traes_5DL_5FD3B95C7 I 0.607
TRIUR3_30866 Triticum urartu TRIUR3_30866 I 0.607
TRIUR3_34593 Triticum urartu TRIUR3_34593 I 0.634
VIT_01s0127g00210 Vitis vinifera VIT_01s0127g00210 I 0.606
KNAT7 Vitis vinifera VIT_02s0025g04630 I 0.687
STM Vitis vinifera VIT_10s0116g00190 I 0.638
VIT_12s0059g01190 Vitis vinifera VIT_12s0059g01190 I 0.606
VIT_14s0060g01180 Vitis vinifera VIT_14s0060g01180 I 0.634
GRMZM2G017087 Zea mays GRMZM2G017087 I 0.626
GRMZM2G028041 Zea mays GRMZM2G028041 I 0.606
GRMZM2G094241 Zea mays GRMZM2G094241 I 0.636
GRMZM2G159431 Zea mays GRMZM2G159431 I 0.571
GRMZM2G452178 Zea mays GRMZM2G452178 I 0.606
GRMZM5G832409 Zea mays GRMZM5G832409 I 0.636