snap_masked-nMf.1.1.scaf08416-processed-gene-0.4 (Meloidogyne floridensis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 snap_masked-nMf.1.1.scaf08416-processed-gene-0.4 T236235_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VSX1
M03087_2.00 		Homo sapiens
YTAATTAN
NTAATTAR		 SELEX
Jolma et al.(2013)
VSX1_1 		0.788 0.522
VSX1
M03088_2.00 		Homo sapiens
NNYAATTRRBN
NVYYAATTRNN		 SELEX
Jolma et al.(2013)
VSX1_2 		0.788 0.522
VSX1
M04941_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_HT-SELEX 		0.788 0.522
VSX1
M04944_2.00 		Homo sapiens
NTAATTRS
SYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_HT-SELEX 		0.788 0.522
VSX1
M05869_2.00 		Homo sapiens
DGCTAATTAN
NTAATTAGCH		 SMiLE-seq
Isakova et al.(2017)
VSX1 		0.788 0.522
VSX1
M04942_2.00 		Homo sapiens
NTAAYGMN
NKCRTTAN		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_1 		0.788 0.522
VSX1
M04943_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_2 		0.788 0.522
VSX1
M04945_2.00 		Homo sapiens
NTAATTRG
CYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_1 		0.788 0.522
VSX1
M04946_2.00 		Homo sapiens
NTAAYGAN
NTCRTTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_2 		0.788 0.522
VAX1
M03168_2.00 		Homo sapiens
YTAATKAN
NTMATTAR		 SELEX
Jolma et al.(2013)
VAX1_1 		0.713 0.326
VAX1
M05182_2.00 		Homo sapiens
BTAATTRN
NYAATTAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_HT-SELEX 		0.713 0.326
VAX1
M05183_2.00 		Homo sapiens
BTMATKRN
NYMATKAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_Methyl-HT-SELEX 		0.713 0.326
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
snap_masked-nMf.1.1.scaf08416-processed-gene-0.4-mRNA-1 Homeodomain 41 86

Links

Other Homeodomain family TFs
Other Meloidogyne floridensis TFs

1240 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000002709 Ailuropoda melanoleuca ENSAMEG00000002709 I 0.000
HES7 Bos taurus ENSBTAG00000012436 I 0.000
HES7 Callithrix jacchus ENSCJAG00000014589 I 0.000
HES7 Cavia porcellus ENSCPOG00000012913 I 0.000
ENSCSAG00000010748 Chlorocebus sabaeus ENSCSAG00000010748 I 0.000
Hes7 Dipodomys ordii ENSDORG00000003869 I 0.000
HES7 Equus caballus ENSECAG00000013278 I 0.000
HES7 Felis catus ENSFCAG00000015190 I 0.000
HES7 Gorilla gorilla ENSGGOG00000005760 I 0.000
HES7 Homo sapiens ENSG00000179111 D 0.000
ENSSTOG00000025336 Ictidomys tridecemlineatus ENSSTOG00000025336 I 0.000
HES7 Loxodonta africana ENSLAFG00000002331 I 0.000
HES7 Macaca mulatta ENSMMUG00000019851 I 0.000
ENSMPUG00000008217 Mustela putorius furo ENSMPUG00000008217 I 0.000
Hes7 Mus musculus ENSMUSG00000023781 D 0.000
HES7 Myotis lucifugus ENSMLUG00000008014 I 0.000
ENSNLEG00000009871 Nomascus leucogenys ENSNLEG00000009871 I 0.000
HES7 Otolemur garnettii ENSOGAG00000026608 I 0.000
ENSOARG00000018861 Ovis aries ENSOARG00000018861 I 0.000
HES7 Pan troglodytes ENSPTRG00000008725 I 0.000
ENSPANG00000023839 Papio anubis ENSPANG00000023839 I 0.000
ENSPPYG00000007948 Pongo abelii ENSPPYG00000007948 I 0.000
HES7 Pteropus vampyrus ENSPVAG00000016370 I 0.000
Hes7 Rattus norvegicus ENSRNOG00000007391 I 0.000
HES7 Sus scrofa ENSSSCG00000017982 I 0.000
HES7 Tursiops truncatus ENSTTRG00000010312 I 0.000