TMUE_s0185001000 (Trichuris muris)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 TMUE_s0185001000 T236957_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PBX2
M08134_2.00 		Homo sapiens
NWGAKTGACABN
NVTGTCAMTCWN		 ChIP-seq
Mathelier et al.(2014)
MA1113.1 		0.867 0.982
PBX2
M09165_2.00 		Homo sapiens
KRVHKTGATTGAWKN
NMWTCAATCAMDBYM		 Misc
Kulakovskiy et al.(2013)
PBX2_HUMAN.H11MO.0.C 		0.867 0.982
Pbx2
M09199_2.00 		Mus musculus
KRVHKTGATTGAWKN
NMWTCAATCAMDBYM		 Misc
Kulakovskiy et al.(2013)
PBX2_MOUSE.H11MO.0.C 		0.867 0.982
pbx4
M02110_2.00 		Tetraodon nigroviridis
TTGAYGDV
BHCRTCAA		 PBM
Weirauch et al.(2014)
pTH6425 		0.867 0.965
Pbx1
M00513_2.00 		Mus musculus
NNDKANNNN
NNNNTMHNN		 PBM
Berger et al.(2008)
Pbx1_3203 		0.867 0.947
PBX1
M05362_2.00 		Homo sapiens
NTGATKGAYR
YRTCMATCAN		 SELEX
Yin et al.(2017)
PBX1_eDBD_HT-SELEX 		0.867 0.947
PBX1
M05364_2.00 		Homo sapiens
DTGMTKGRYN
NRYCMAKCAH		 SELEX
Yin et al.(2017)
PBX1_FL_HT-SELEX 		0.867 0.947
PBX1
M02685_2.00 		Homo sapiens
WWTGATTGATND
HNATCAATCAWW		 SELEX
Mathelier et al.(2014)
MA0070.1 		0.867 0.947
PBX1
M09164_2.00 		Homo sapiens
DGABTGRCRG
CYGYCAVTCH		 Misc
Kulakovskiy et al.(2013)
PBX1_HUMAN.H11MO.0.A 		0.867 0.947
PBX1
M09561_2.00 		Homo sapiens
TGABTGACAGSC
GSCTGTCAVTCA		 Misc
Heinz et al.(2010)
MCF7-PBX1_GSE28007 		0.867 0.947
PBX1
M10748_2.00 		Homo sapiens
WTKATTRDT
AHYAATMAW		 Transfac
Matys et al.(2006)
V$PBX1_01 		0.867 0.947
PBX1
M10749_2.00 		Homo sapiens
DNHTTGATTGATKDB
VHMATCAATCAADNH		 Transfac
Matys et al.(2006)
V$PBX1_02 		0.867 0.947
PBX1
M10750_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX1_03 		0.867 0.947
PBX1
M10751_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX1_05 		0.867 0.947
PBX1
M10752_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX1_10 		0.867 0.947
PBX1
M10753_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX1_Q3 		0.867 0.947
PBX1
M05363_2.00 		Homo sapiens
DTGAKKGAYG
CRTCMMTCAH		 SELEX
Yin et al.(2017)
PBX1_eDBD_Methyl-HT-SELEX 		0.867 0.947
PBX1
M05365_2.00 		Homo sapiens
MRTCAATCMH
DKGATTGAYK		 SELEX
Yin et al.(2017)
PBX1_FL_Methyl-HT-SELEX 		0.867 0.947
Pbx3
M09205_2.00 		Mus musculus
BBBTGATTGRYNDN
NHNRYCAATCAVVV		 Misc
Kulakovskiy et al.(2013)
PBX3_MOUSE.H11MO.0.A 		0.865 0.947
exd
M06487_2.00 		Drosophila melanogaster
YRTCAAAN
NTTTGAYR		 B1H
Mathelier et al.(2014)
MA0222.1 		0.822 0.965
exd
M06243_2.00 		Drosophila melanogaster
YRTCAAAN
NTTTGAYR		 B1H
Zhu et al.(2011)
Exd_Cell_FBgn0000611 		0.822 0.965
exd
M06244_2.00 		Drosophila melanogaster
NWRNWYNAAA
TTTNRWNYWN		 B1H
Zhu et al.(2011)
exd_FlyReg_FBgn0000611 		0.822 0.965
exd
M06245_2.00 		Drosophila melanogaster
NDTGAYRW
WYRTCAHN		 B1H
Zhu et al.(2011)
exd_SOLEXA_2_FBgn0000611 		0.822 0.965
exd
M06246_2.00 		Drosophila melanogaster
NNDTGAYR
YRTCAHNN		 B1H
Zhu et al.(2011)
Exd_SOLEXA_FBgn0000611 		0.822 0.965
PBX4
M00277_2.00 		Homo sapiens
NNDDWHDNNN
NNNHDWHHNN		 PBM
Barrera et al.(2016)
PBX4_REF 		0.815 0.930
PBX4
M10649_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX4_01 		0.815 0.930
CBG10835
M01243_2.00 		Caenorhabditis briggsae
NNTKAYDNN
NNHRTMANN		 PBM
Lambert et al.(2019)
pTH11444 		0.691 0.561
PBX4
M00276_2.00 		Homo sapiens
NYTAATTADNN
NNHTAATTARN		 PBM
Barrera et al.(2016)
PBX4_R215Q 		0.677 0.912
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
TMUE_s0185001000 Homeodomain 192 251

Links

Other Homeodomain family TFs
Other Trichuris muris TFs

435 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000015241 Ailuropoda melanoleuca ENSAMEG00000015241 I
Alligator_sinensis_CCG003098.5 Alligator sinensis Alligator_sinensis_CCG003098.5 I
ENSAPLG00000005397 Anas platyrhynchos ENSAPLG00000005397 I
Afo_R005310 Aptenodytes forsteri Afo_R005310 I
ENSBTAP00000012902-D1 Bos grunniens ENSBTAP00000012902-D1 I
GTF2I Bos taurus ENSBTAG00000009780 I
Brh_R001815 Buceros rhinoceros Brh_R001815 N
GTF2I Callithrix jacchus ENSCJAG00000016182 I
Aan_R007260 Calypte anna Aan_R007260 I
GTF2I Canis familiaris ENSCAFG00000011514 I
GTF2I Cavia porcellus ENSCPOG00000004071 I
Cmyd_10014807 Chelonia mydas Cmyd_10014807 I
ENSCSAG00000018227 Chlorocebus sabaeus ENSCSAG00000018227 I
ENSDNOG00000000823 Dasypus novemcinctus ENSDNOG00000000823 I
GTF2I Equus caballus ENSECAG00000020289 I
GTF2I Felis catus ENSFCAG00000002617 I
ENSFALG00000007065 Ficedula albicollis ENSFALG00000007065 I
GTF2I Gallus gallus ENSGALG00000021665 I
Gfo_R013538 Geospiza fortis Gfo_R013538 I
GTF2I Homo sapiens ENSG00000263001 D
ENSLACG00000018432 Latimeria chalumnae ENSLACG00000018432 I
GTF2I Loxodonta africana ENSLAFG00000003646 I
ENSP00000322542 Macaca fascicularis ENSP00000322542 I
GTF2I Macaca mulatta ENSMMUG00000006823 I
GTF2I Meleagris gallopavo ENSMGAG00000002373 I
GTF2I Monodelphis domestica ENSMODG00000007022 I
ENSMPUG00000016156 Mustela putorius furo ENSMPUG00000016156 I
Gtf2i Mus musculus ENSMUSG00000060261 I
Myotis_brandtii_GTF2I_10014287 Myotis brandtii Myotis_brandtii_GTF2I_10014287 I
GTF2I Myotis lucifugus ENSMLUG00000002844 I
ENSNLEG00000008741 Nomascus leucogenys ENSNLEG00000008741 I
GTF2I Ornithorhynchus anatinus ENSOANG00000012919 I
GTF2I Oryctolagus cuniculus ENSOCUG00000002063 I
GTF2I Otolemur garnettii ENSOGAG00000029837 I
ENSOARG00000011276 Ovis aries ENSOARG00000011276 I
GTF2I Pan troglodytes ENSPTRG00000019293 I
ENSPANG00000010876 Papio anubis ENSPANG00000010876 I
ENSPSIG00000011811 Pelodiscus sinensis ENSPSIG00000011811 I
Pvit_17518 Pogona vitticeps Pvit_17518 I
ENSPPYG00000017484 Pongo abelii ENSPPYG00000017484 I
GTF2I Pteropus vampyrus ENSPVAG00000005365 I
Gtf2i Rattus norvegicus ENSRNOG00000001479 I
GTF2I Sus scrofa ENSSSCG00000007721 I
GTF2I Taeniopygia guttata ENSTGUG00000003714 I
GTF2I Tursiops truncatus ENSTTRG00000014454 I
Tal_R004165 Tyto alba Tal_R004165 I
GTF2I Vicugna pacos ENSVPAG00000008515 I
gtf2i.S Xenopus laevis XB-GENE-1217444 I
XP_002932326 Xenopus tropicalis XP_002932326 I