TsM_000169700 (Taenia solium)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 TsM_000169700 T237036_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Hoxa1
M00450_2.00 		Mus musculus
NHRATKRNN
NNYMATYDN		 PBM
Berger et al.(2008)
Hoxa1_3425 		0.652 0.719
HOXA1
M03096_2.00 		Homo sapiens
NNTAATTRNN
NNYAATTANN		 SELEX
Jolma et al.(2013)
HOXA1_1 		0.652 0.719
HOXA1
M04959_2.00 		Homo sapiens
NTMATKAN
NTMATKAN		 SELEX
Yin et al.(2017)
HOXA1_FL_HT-SELEX 		0.652 0.719
HOXA1
M09133_2.00 		Homo sapiens
NKGATGGATG
CATCCATCMN		 Misc
Kulakovskiy et al.(2013)
HXA1_HUMAN.H11MO.0.C 		0.652 0.719
Hoxa1
M09196_2.00 		Mus musculus
NKGATGGATG
CATCCATCMN		 Misc
Kulakovskiy et al.(2013)
HXA1_MOUSE.H11MO.0.C 		0.652 0.719
HOXA1
M04960_2.00 		Homo sapiens
NTMATKAN
NTMATKAN		 SELEX
Yin et al.(2017)
HOXA1_FL_Methyl-HT-SELEX_1 		0.652 0.719
HOXA1
M04961_2.00 		Homo sapiens
NTAAYGAB
VTCRTTAN		 SELEX
Yin et al.(2017)
HOXA1_FL_Methyl-HT-SELEX_2 		0.652 0.719
lab
M03797_2.00 		Drosophila melanogaster
NTAATTAS
STAATTAN		 SELEX
Nitta et al.(2015)
lab_1 		0.616 0.684
lab
M06493_2.00 		Drosophila melanogaster
TTAATKA
TMATTAA		 B1H
Mathelier et al.(2014)
MA0230.1 		0.616 0.684
lab
M06260_2.00 		Drosophila melanogaster
TTAATKA
TMATTAA		 B1H
Zhu et al.(2011)
Lab_Cell_FBgn0002522 		0.616 0.684
lab
M06261_2.00 		Drosophila melanogaster
YTAATKA
TMATTAR		 B1H
Zhu et al.(2011)
Lab_SOLEXA_FBgn0002522 		0.616 0.684
Hoxd1
M00492_2.00 		Mus musculus
NRATNDNN
NNHNATYN		 PBM
Berger et al.(2008)
Hoxd1_3448 		0.600 0.684
HOXD1
M05098_2.00 		Homo sapiens
BTAATTAV
BTAATTAV		 SELEX
Yin et al.(2017)
HOXD1_eDBD_HT-SELEX 		0.600 0.684
Hoxd1
M10768_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HOXD1_03 		0.600 0.684
HOXD1
M05099_2.00 		Homo sapiens
BTAATKAV
BTMATTAV		 SELEX
Yin et al.(2017)
HOXD1_eDBD_Methyl-HT-SELEX_1 		0.600 0.684
HOXD1
M05100_2.00 		Homo sapiens
NTWAYGAB
VTCRTWAN		 SELEX
Yin et al.(2017)
HOXD1_eDBD_Methyl-HT-SELEX_2 		0.600 0.684
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
TsM_000169700 Homeodomain 73 129

Links

Other Homeodomain family TFs
Other Taenia solium TFs

Invalid Input OrderBy

185 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action