CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

TTRE_0000023201 *(Trichuris trichiura)* Homeodomain
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00046 (Homeobox)	IPR001356	TTRE_0000023201	T237152_2.00	WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
Abd-B M00554_2.00	Drosophila melanogaster	NWTWAYDDNN	NNHHRTWAWN	PBM Busser et al.(2012a) Abd-B	0.832	0.895
Abd-B M03772_2.00	Drosophila melanogaster	DRTCRTAAAWH	DWTTTAYGAYH	SELEX Nitta et al.(2015) Abd-B_1	0.832	0.895
Abd-B M03773_2.00	Drosophila melanogaster	DTTTTATKRCY	RGYMATAAAAH	SELEX Nitta et al.(2015) Abd-B_2	0.832	0.895
Abd-B M03774_2.00	Drosophila melanogaster	NKCARYAACGACYW	WRGTCGTTRYTGMN	SELEX Nitta et al.(2015) Abd-B_3	0.832	0.895
Abd-B M03775_2.00	Drosophila melanogaster	DTTTWATGKSTTTY	RAAASMCATWAAAH	SELEX Nitta et al.(2015) Abd-B_4	0.832	0.895
Abd-B M06476_2.00	Drosophila melanogaster	TTTATKR	YMATAAA	B1H Mathelier et al.(2014) MA0165.1	0.832	0.895
Abd-B M06211_2.00	Drosophila melanogaster	YCATAAAA	TTTTATGR	B1H Zhu et al.(2011) Abd-B_FlyReg_FBgn0000015	0.832	0.895
Abd-B M09672_2.00	Drosophila melanogaster	YMATAAAAHH	DDTTTTATKR	Misc Kulakovskiy et al.(2009) Abd-B	0.832	0.895
Abd-B M10779_2.00	Drosophila melanogaster	VSNTTDATKRCNNN	NNNGYMATHAANSB	Transfac Matys et al.(2006) I$ABDB_01	0.832	0.895
Abd-B M10780_2.00	Drosophila melanogaster	Transfac license required	Transfac license required	Transfac Matys et al.(2006) I$ABDB_Q6	0.832	0.895
Hoxd12_CONSTRUCT M00538_2.00	PBM CONSTRUCTS	NWTWAYNDBN	NVHNRTWAWN	PBM Berger et al.(2008) Hoxd12_3481	0.721	0.649
HOXD12 M03206_2.00	Homo sapiens	SYAATAAAA	TTTTATTRS	SELEX Jolma et al.(2013) HOXD12_1	0.721	0.649
HOXD12 M03207_2.00	Homo sapiens	RVTCGTAAAAH	DTTTTACGABY	SELEX Jolma et al.(2013) HOXD12_2	0.721	0.649
HOXD12 M03208_2.00	Homo sapiens	NRTCGTAAAHN	NDTTTACGAYN	SELEX Jolma et al.(2013) HOXD12_3	0.721	0.649
HOXD12 M03209_2.00	Homo sapiens	DTTWATYRC	GYRATWAAH	SELEX Jolma et al.(2013) HOXD12_4	0.721	0.649
HOXD12 M05279_2.00	Homo sapiens	NKTWACGAYN	NRTCGTWAMN	SELEX Yin et al.(2017) HOXD12_eDBD_HT-SELEX	0.721	0.649
HOXD12 M05280_2.00	Homo sapiens	NRTCGTAAAH	DTTTACGAYN	SELEX Yin et al.(2017) HOXD12_eDBD_Methyl-HT-SELEX	0.721	0.649
Hoxc12 M00508_2.00	Mus musculus	NDTWAYNDBN	NVHNRTWAHN	PBM Berger et al.(2008) Hoxc12_3480	0.721	0.614
HOXC12 M03135_2.00	Homo sapiens	TTTTATTRY	RYAATAAAA	SELEX Jolma et al.(2013) HOXC12_1	0.721	0.614
HOXC12 M03136_2.00	Homo sapiens	RRTCGTAAAAH	DTTTTACGAYY	SELEX Jolma et al.(2013) HOXC12_2	0.721	0.614
HOXC12 M05083_2.00	Homo sapiens	NGYAATAAAAN	NTTTTATTRCN	SELEX Yin et al.(2017) HOXC12_eDBD_HT-SELEX_1	0.721	0.614
HOXC12 M05084_2.00	Homo sapiens	VRTCGTAAAHN	NDTTTACGAYB	SELEX Yin et al.(2017) HOXC12_eDBD_HT-SELEX_2	0.721	0.614
HOXC12 M05085_2.00	Homo sapiens	NGYAATAAAAH	DTTTTATTRCN	SELEX Yin et al.(2017) HOXC12_eDBD_Methyl-HT-SELEX_1	0.721	0.614
HOXC12 M05086_2.00	Homo sapiens	NRTCGTAAAHH	DDTTTACGAYN	SELEX Yin et al.(2017) HOXC12_eDBD_Methyl-HT-SELEX_2	0.721	0.614
Q9U9Y9_LINUN M02218_2.00	Lingula unguis	NNTAATWAATN	NATTWATTANN	PBM Weirauch et al.(2014) pTH5504	0.721	0.667
HXD12_HETFR M02196_2.00	Heterodontus francisci	TTWATKRC	GYMATWAA	PBM Weirauch et al.(2014) pTH6533	0.688	0.632
Hoxd9 M03282_2.00	Mus musculus	TTTWATKKB	VMMATWAAA	SELEX Jolma et al.(2013) Hoxd9_1	0.674	0.772
Hoxd9 M03283_2.00	Mus musculus	DWTTWATKRY	RYMATWAAWH	SELEX Jolma et al.(2013) Hoxd9_2	0.674	0.772
Hoxd9 M03284_2.00	Mus musculus	DTTWAYGRB	VYCRTWAAH	SELEX Jolma et al.(2013) Hoxd9_3	0.674	0.772
HOXC9 M05331_2.00	Homo sapiens	GTCGTAAAAN	NTTTTACGAC	SELEX Yin et al.(2017) HOXC9_FL_HT-SELEX_1	0.674	0.772
HOXC9 M05332_2.00	Homo sapiens	NTTTTATKRC	GYMATAAAAN	SELEX Yin et al.(2017) HOXC9_FL_HT-SELEX_2	0.674	0.772
HOXD9 M05104_2.00	Homo sapiens	NTTTTATKRC	GYMATAAAAN	SELEX Yin et al.(2017) HOXD9_eDBD_HT-SELEX_1	0.674	0.772
HOXD9 M05105_2.00	Homo sapiens	RTCRTAAAWN	NWTTTAYGAY	SELEX Yin et al.(2017) HOXD9_eDBD_HT-SELEX_2	0.674	0.772
HOXD9 M05108_2.00	Homo sapiens	RTCGTAAAWN	NWTTTACGAY	SELEX Yin et al.(2017) HOXD9_FL_HT-SELEX_1	0.674	0.772
HOXD9 M05109_2.00	Homo sapiens	NTTTTATKRC	GYMATAAAAN	SELEX Yin et al.(2017) HOXD9_FL_HT-SELEX_2	0.674	0.772
HOXC9 M09161_2.00	Homo sapiens	HTTWATKGCH	DGCMATWAAD	Misc Kulakovskiy et al.(2013) HXC9_HUMAN.H11MO.0.C	0.674	0.772
HOXD9 M10686_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HOXD9_Q2	0.674	0.772
HOXC9 M05333_2.00	Homo sapiens	RTCGTAAAHN	NDTTTACGAY	SELEX Yin et al.(2017) HOXC9_FL_Methyl-HT-SELEX_1	0.674	0.772
HOXC9 M05334_2.00	Homo sapiens	NTTTWATKRC	GYMATWAAAN	SELEX Yin et al.(2017) HOXC9_FL_Methyl-HT-SELEX_2	0.674	0.772
HOXD9 M05106_2.00	Homo sapiens	NNTTWATKRC	GYMATWAANN	SELEX Yin et al.(2017) HOXD9_eDBD_Methyl-HT-SELEX_1	0.674	0.772
HOXD9 M05107_2.00	Homo sapiens	RTCGTAAANN	NNTTTACGAY	SELEX Yin et al.(2017) HOXD9_eDBD_Methyl-HT-SELEX_2	0.674	0.772
HOXD9 M05110_2.00	Homo sapiens	RTCGTAAANN	NNTTTACGAY	SELEX Yin et al.(2017) HOXD9_FL_Methyl-HT-SELEX_1	0.674	0.772
HOXD9 M05111_2.00	Homo sapiens	NDTTWATKRC	GYMATWAAHN	SELEX Yin et al.(2017) HOXD9_FL_Methyl-HT-SELEX_2	0.674	0.772
Hoxb9 M00410_2.00	Mus musculus	NTTWAYDDNN	NNHHRTWAAN	PBM Berger et al.(2008) Hoxb9_3413	0.674	0.754
Hoxa9 M00475_2.00	Mus musculus	NNDDBNNN	NNNVHHNN	PBM Berger et al.(2008) Hoxa9_2622	0.674	0.754
HOXA9 M03085_2.00	Homo sapiens	NNDTTWAYGAYN	NRTCRTWAAHNN	SELEX Jolma et al.(2013) HOXA10_1	0.674	0.754
HOXA9 M03086_2.00	Homo sapiens	NDTTWATKRYN	NRYMATWAAHN	SELEX Jolma et al.(2013) HOXA10_2	0.674	0.754
HOXA9 M04932_2.00	Homo sapiens	NNDWWABKRC	GYMVTWWHNN	SELEX Yin et al.(2017) HOXA9_FL_HT-SELEX_1	0.674	0.754
HOXA9 M04933_2.00	Homo sapiens	NNDTWAYGRB	VYCRTWAHNN	SELEX Yin et al.(2017) HOXA9_FL_HT-SELEX_2	0.674	0.754
HOXB9 M05289_2.00	Homo sapiens	RTCRTAAAWN	NWTTTAYGAY	SELEX Yin et al.(2017) HOXB9_eDBD_HT-SELEX_1	0.674	0.754
HOXB9 M05290_2.00	Homo sapiens	NTTTWATKRC	GYMATWAAAN	SELEX Yin et al.(2017) HOXB9_eDBD_HT-SELEX_2	0.674	0.754
Hoxa9 M08138_2.00	Mus musculus	TGATTKATKRB	VYMATMAATCA	ChIP-seq Mathelier et al.(2014) MA0594.1	0.674	0.754
HOXA9 M09130_2.00	Homo sapiens	DCATAAAYYRBH	DVYRRTTTATGH	Misc Kulakovskiy et al.(2013) HXA10_HUMAN.H11MO.0.C	0.674	0.754
HOXA9 M09131_2.00	Homo sapiens	HHATAAATCAH	DTGATTTATDD	Misc Kulakovskiy et al.(2013) HXA9_HUMAN.H11MO.0.B	0.674	0.754
Hoxa9 M09203_2.00	Mus musculus	HHATAAATCAH	DTGATTTATDD	Misc Kulakovskiy et al.(2013) HXA9_MOUSE.H11MO.0.B	0.674	0.754
Hoxa9 M09575_2.00	Mus musculus	WGATTKATDRBY	RVYHATMAATCW	Misc Heinz et al.(2010) HSC-Hoxa9_GSE33509	0.674	0.754
HOXA9 M10642_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HOXA10_Q6	0.674	0.754
HOXA9 M10643_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HOXA9_04	0.674	0.754
HOXA9 M10644_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HOXA9_Q5_01	0.674	0.754
HOXA9 M10645_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HOXA9_Q5	0.674	0.754
HOXB9 M05291_2.00	Homo sapiens	GTCGTAAAHB	VDTTTACGAC	SELEX Yin et al.(2017) HOXB9_eDBD_Methyl-HT-SELEX	0.674	0.754
HOXA9 M04934_2.00	Homo sapiens	NNDTWAYKRC	GYMRTWAHNN	SELEX Yin et al.(2017) HOXA9_FL_Methyl-HT-SELEX_1	0.674	0.754
HOXA9 M04935_2.00	Homo sapiens	NNDTWACGAY	RTCGTWAHNN	SELEX Yin et al.(2017) HOXA9_FL_Methyl-HT-SELEX_2	0.674	0.754
Hoxc9 M00470_2.00	Mus musculus	NGTAATWAAN	NTTWATTACN	PBM Berger et al.(2008) Hoxc9_2367	0.666	0.754
Hoxc9 M08137_2.00	Mus musculus	NWGATTTATDGSH	DSCHATAAATCWN	ChIP-seq Mathelier et al.(2014) MA0485.1	0.666	0.754
Hoxc9 M09574_2.00	Mus musculus	TGATTTATDGCH	DGCHATAAATCA	Misc Heinz et al.(2010) Ainv15-Hoxc9_GSE21812	0.666	0.754
Hoxa10 M00382_2.00	Mus musculus	NHWAYNNNN	NNNNRTWDN	PBM Berger et al.(2008) Hoxa10_2318	0.658	0.719
HOXA10 M05394_2.00	Homo sapiens	RRTCGTAAAAH	DTTTTACGAYY	SELEX Yin et al.(2017) HOXA10_eDBD_HT-SELEX_1	0.658	0.719
HOXA10 M05395_2.00	Homo sapiens	NTTTTATKRCY	RGYMATAAAAN	SELEX Yin et al.(2017) HOXA10_eDBD_HT-SELEX_2	0.658	0.719
HOXA10 M05398_2.00	Homo sapiens	NRTCRTWAANN	NNTTWAYGAYN	SELEX Yin et al.(2017) HOXA10_FL_HT-SELEX_1	0.658	0.719
HOXA10 M05399_2.00	Homo sapiens	NNTTWATKRCN	NGYMATWAANN	SELEX Yin et al.(2017) HOXA10_FL_HT-SELEX_2	0.658	0.719
Hoxa10 M09170_2.00	Mus musculus	DCATAAAYYRBH	DVYRRTTTATGH	Misc Kulakovskiy et al.(2013) HXA10_MOUSE.H11MO.0.C	0.658	0.719
Hoxa10 M10763_2.00	Mus musculus	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HOXA10_Q5	0.658	0.719
HOXA10 M05396_2.00	Homo sapiens	NGTCGTAAAWN	NWTTTACGACN	SELEX Yin et al.(2017) HOXA10_eDBD_Methyl-HT-SELEX_1	0.658	0.719
HOXA10 M05397_2.00	Homo sapiens	NTTTTATKRCB	VGYMATAAAAN	SELEX Yin et al.(2017) HOXA10_eDBD_Methyl-HT-SELEX_2	0.658	0.719
HOXA10 M05400_2.00	Homo sapiens	NRTCGTWAANN	NNTTWACGAYN	SELEX Yin et al.(2017) HOXA10_FL_Methyl-HT-SELEX_1	0.658	0.719
HOXA10 M05401_2.00	Homo sapiens	NNTTWATKRYN	NRYMATWAANN	SELEX Yin et al.(2017) HOXA10_FL_Methyl-HT-SELEX_2	0.658	0.719
Hoxd10 M00509_2.00	Mus musculus	NNNNNNNN	NNNNNNNN	PBM Berger et al.(2008) Hoxd10_2368	0.658	0.702
HOXD10 M05112_2.00	Homo sapiens	NKTTTATKRC	GYMATAAAMN	SELEX Yin et al.(2017) HOXD10_eDBD_HT-SELEX_1	0.658	0.702
HOXD10 M05113_2.00	Homo sapiens	RTCGTAAAHN	NDTTTACGAY	SELEX Yin et al.(2017) HOXD10_eDBD_HT-SELEX_2	0.658	0.702
HOXD10 M05116_2.00	Homo sapiens	RGTCGTAAAAH	DTTTTACGACY	SELEX Yin et al.(2017) HOXD10_FL_HT-SELEX_1	0.658	0.702
HOXD10 M05117_2.00	Homo sapiens	RRYMATAAAAH	DTTTTATKRYY	SELEX Yin et al.(2017) HOXD10_FL_HT-SELEX_2	0.658	0.702
HOXD10 M10687_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HOXD10_Q2	0.658	0.702
HOXD10 M10688_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HOXD10_Q6	0.658	0.702
HOXD10 M05114_2.00	Homo sapiens	NTTTTATKRC	GYMATAAAAN	SELEX Yin et al.(2017) HOXD10_eDBD_Methyl-HT-SELEX_1	0.658	0.702
HOXD10 M05115_2.00	Homo sapiens	GTCGTAAAHN	NDTTTACGAC	SELEX Yin et al.(2017) HOXD10_eDBD_Methyl-HT-SELEX_2	0.658	0.702
HOXD10 M05118_2.00	Homo sapiens	VGTCGTAAAAH	DTTTTACGACB	SELEX Yin et al.(2017) HOXD10_FL_Methyl-HT-SELEX_1	0.658	0.702
HOXD10 M05119_2.00	Homo sapiens	DGYAATAAAAH	DTTTTATTRCH	SELEX Yin et al.(2017) HOXD10_FL_Methyl-HT-SELEX_2	0.658	0.702
Hoxc10 M00421_2.00	Mus musculus	TTWATKAB	VTMATWAA	PBM Berger et al.(2008) Hoxc10_2779	0.646	0.684
HOXC10 M03228_2.00	Homo sapiens	DTTTWATKDB	VHMATWAAAH	SELEX Jolma et al.(2013) HOXC10_1	0.646	0.684
HOXC10 M03229_2.00	Homo sapiens	NNTTWATKRB	VYMATWAANN	SELEX Jolma et al.(2013) HOXC10_2	0.646	0.684
HOXC10 M03230_2.00	Homo sapiens	NWTTWAYGAB	VTCRTWAAWN	SELEX Jolma et al.(2013) HOXC10_3	0.646	0.684
Hoxc10 M03252_2.00	Mus musculus	DTTTWAYGAY	RTCRTWAAAH	SELEX Jolma et al.(2013) Hoxc10_1	0.646	0.684
Hoxc10 M03253_2.00	Mus musculus	DTTTWATKRY	RYMATWAAAH	SELEX Jolma et al.(2013) Hoxc10_2	0.646	0.684
HOXC10 M05335_2.00	Homo sapiens	NDTTTATKRCN	NGYMATAAAHN	SELEX Yin et al.(2017) HOXC10_eDBD_HT-SELEX_1	0.646	0.684
HOXC10 M05336_2.00	Homo sapiens	NRTCGTAAAHN	NDTTTACGAYN	SELEX Yin et al.(2017) HOXC10_eDBD_HT-SELEX_2	0.646	0.684
HOXC10 M05339_2.00	Homo sapiens	NTTTTATKRCN	NGYMATAAAAN	SELEX Yin et al.(2017) HOXC10_FL_HT-SELEX_1	0.646	0.684
HOXC10 M05340_2.00	Homo sapiens	NRTCGTAAAWN	NWTTTACGAYN	SELEX Yin et al.(2017) HOXC10_FL_HT-SELEX_2	0.646	0.684
HOXC10 M05337_2.00	Homo sapiens	NTTTTATKRCN	NGYMATAAAAN	SELEX Yin et al.(2017) HOXC10_eDBD_Methyl-HT-SELEX_1	0.646	0.684
HOXC10 M05338_2.00	Homo sapiens	NRTCGTAAAHN	NDTTTACGAYN	SELEX Yin et al.(2017) HOXC10_eDBD_Methyl-HT-SELEX_2	0.646	0.684
HOXC10 M05341_2.00	Homo sapiens	DTTTTATKRCH	DGYMATAAAAH	SELEX Yin et al.(2017) HOXC10_FL_Methyl-HT-SELEX_1	0.646	0.684
HOXC10 M05342_2.00	Homo sapiens	VGTCGTAAAHN	NDTTTACGACB	SELEX Yin et al.(2017) HOXC10_FL_Methyl-HT-SELEX_2	0.646	0.684
Hoxb6 M00381_2.00	Mus musculus	NNDHNNN	NNNDHNN	PBM Berger et al.(2008) Hoxb6_3428	0.620	0.667
HOXB6 M04999_2.00	Homo sapiens	NTAATKRY	RYMATTAN	SELEX Yin et al.(2017) HOXB6_eDBD_HT-SELEX	0.620	0.667
HOXB6 M05000_2.00	Homo sapiens	HTAAYGAY	RTCRTTAD	SELEX Yin et al.(2017) HOXB6_eDBD_Methyl-HT-SELEX_1	0.620	0.667
HOXB6 M05001_2.00	Homo sapiens	NTWATKRB	VYMATWAN	SELEX Yin et al.(2017) HOXB6_eDBD_Methyl-HT-SELEX_2	0.620	0.667
Hoxd11 M00493_2.00	Mus musculus	DDDNNNNN	NNNNNHHH	PBM Berger et al.(2008) Hoxd11_3873	0.620	0.702
HOXD11 M03139_2.00	Homo sapiens	RTCGTAAAWH	DWTTTACGAY	SELEX Jolma et al.(2013) HOXD11_1	0.620	0.702
HOXD11 M03140_2.00	Homo sapiens	TTTWATKRBH	DVYMATWAAA	SELEX Jolma et al.(2013) HOXD11_2	0.620	0.702
HOXD11 M05120_2.00	Homo sapiens	NRTCGTWAANNDTWAH	DTWAHNNTTWACGAYN	SELEX Yin et al.(2017) HOXD11_eDBD_HT-SELEX	0.620	0.702
HOXD11 M05121_2.00	Homo sapiens	NRTCGTWAAHNDTWAH	DTWAHNDTTWACGAYN	SELEX Yin et al.(2017) HOXD11_eDBD_Methyl-HT-SELEX	0.620	0.702
Hoxa11 M00474_2.00	Mus musculus	NNHNHNNNN	NNNNDNDNN	PBM Berger et al.(2008) Hoxa11_2218	0.620	0.684
Hoxa11 M03274_2.00	Mus musculus	NNDTTWAYGABN	NVTCRTWAAHNN	SELEX Jolma et al.(2013) Hoxa11_1	0.620	0.684
Hoxa11 M03275_2.00	Mus musculus	NDTTWATKRNN	NNYMATWAAHN	SELEX Jolma et al.(2013) Hoxa11_2	0.620	0.684
HOXA11 M04897_2.00	Homo sapiens	VGTCGTAAAWH	DWTTTACGACB	SELEX Yin et al.(2017) HOXA11_eDBD_HT-SELEX_1	0.620	0.684
HOXA11 M04898_2.00	Homo sapiens	DDTTWATKRSN	NSYMATWAAHH	SELEX Yin et al.(2017) HOXA11_eDBD_HT-SELEX_2	0.620	0.684
HOXA11 M04899_2.00	Homo sapiens	NRTCGTAAAWH	DWTTTACGAYN	SELEX Yin et al.(2017) HOXA11_eDBD_Methyl-HT-SELEX_1	0.620	0.684
HOXA11 M04900_2.00	Homo sapiens	DYTTTATKRCH	DGYMATAAARH	SELEX Yin et al.(2017) HOXA11_eDBD_Methyl-HT-SELEX_2	0.620	0.684
Hoxc11 M00390_2.00	Mus musculus	NTTWAYDDBN	NVHHRTWAAN	PBM Berger et al.(2008) Hoxc11_3718	0.620	0.667
HOXC11 M03131_2.00	Homo sapiens	NWTTWAYGAYH	DRTCRTWAAWN	SELEX Jolma et al.(2013) HOXC11_1	0.620	0.667
HOXC11 M03132_2.00	Homo sapiens	NWTTWATKRBH	DVYMATWAAWN	SELEX Jolma et al.(2013) HOXC11_2	0.620	0.667
HOXC11 M03133_2.00	Homo sapiens	DRTCGTWAAWN	NWTTWACGAYH	SELEX Jolma et al.(2013) HOXC11_3	0.620	0.667
HOXC11 M03134_2.00	Homo sapiens	NTTTTATKRBN	NVYMATAAAAN	SELEX Jolma et al.(2013) HOXC11_4	0.620	0.667
HOXC11 M05075_2.00	Homo sapiens	NDTTWACGAYN	NRTCGTWAAHN	SELEX Yin et al.(2017) HOXC11_eDBD_HT-SELEX_1	0.620	0.667
HOXC11 M05076_2.00	Homo sapiens	NWTTWATKRCH	DGYMATWAAWN	SELEX Yin et al.(2017) HOXC11_eDBD_HT-SELEX_2	0.620	0.667
HOXC11 M05079_2.00	Homo sapiens	NRTCGTWAAHN	NDTTWACGAYN	SELEX Yin et al.(2017) HOXC11_FL_HT-SELEX_1	0.620	0.667
HOXC11 M05080_2.00	Homo sapiens	NDTTWATKRSN	NSYMATWAAHN	SELEX Yin et al.(2017) HOXC11_FL_HT-SELEX_2	0.620	0.667
HOXC11 M05077_2.00	Homo sapiens	NRTCGTAAAHN	NDTTTACGAYN	SELEX Yin et al.(2017) HOXC11_eDBD_Methyl-HT-SELEX_1	0.620	0.667
HOXC11 M05078_2.00	Homo sapiens	NDTTTATKRSN	NSYMATAAAHN	SELEX Yin et al.(2017) HOXC11_eDBD_Methyl-HT-SELEX_2	0.620	0.667
HOXC11 M05081_2.00	Homo sapiens	NRTCGTWAANN	NNTTWACGAYN	SELEX Yin et al.(2017) HOXC11_FL_Methyl-HT-SELEX_1	0.620	0.667
HOXC11 M05082_2.00	Homo sapiens	NNTTWAYKRSN	NSYMRTWAANN	SELEX Yin et al.(2017) HOXC11_FL_Methyl-HT-SELEX_2	0.620	0.667
Hoxd8 M00436_2.00	Mus musculus	NNWWYNNN	NNNRWWNN	PBM Berger et al.(2008) Hoxd8_2644	0.617	0.649
HOXD8 M03221_2.00	Homo sapiens	VHWAATKWDN	NHWMATTWDB	SELEX Jolma et al.(2013) HOXD8_1	0.617	0.649
HOXD8 M05310_2.00	Homo sapiens	BTAATKRY	RYMATTAV	SELEX Yin et al.(2017) HOXD8_eDBD_HT-SELEX	0.617	0.649
HOXD8 M05311_2.00	Homo sapiens	NTAATKRN	NYMATTAN	SELEX Yin et al.(2017) HOXD8_eDBD_Methyl-HT-SELEX_1	0.617	0.649
HOXD8 M05312_2.00	Homo sapiens	NTWAYGRY	RYCRTWAN	SELEX Yin et al.(2017) HOXD8_eDBD_Methyl-HT-SELEX_2	0.617	0.649
Hoxa6 M00494_2.00	Mus musculus	NWWATKRNN	NNYMATWWN	PBM Berger et al.(2008) Hoxa6_1040	0.616	0.649
Ubx M00558_2.00	Drosophila melanogaster	NWWAYDDNN	NNHHRTWWN	PBM Busser et al.(2012a) Ubx	0.616	0.649
Ubx M03804_2.00	Drosophila melanogaster	NTAATKRH	DYMATTAN	SELEX Nitta et al.(2015) Ubx_1	0.616	0.649
HOXA6 M04974_2.00	Homo sapiens	NNTAATKRVN	NBYMATTANN	SELEX Yin et al.(2017) HOXA6_eDBD_HT-SELEX	0.616	0.649
Ubx M06499_2.00	Drosophila melanogaster	NTTAATKR	YMATTAAN	B1H Mathelier et al.(2014) MA0094.2	0.616	0.649
Ubx M06273_2.00	Drosophila melanogaster	NTTAATKR	YMATTAAN	B1H Zhu et al.(2011) Ubx_Cell_FBgn0003944	0.616	0.649
Ubx M06274_2.00	Drosophila melanogaster	TAATKD	HMATTA	B1H Zhu et al.(2011) Ubx_FlyReg_FBgn0003944	0.616	0.649
Ubx M06275_2.00	Drosophila melanogaster	NTTWATKR	YMATWAAN	B1H Zhu et al.(2011) Ubx_SOLEXA_FBgn0003944	0.616	0.649
Ubx M09680_2.00	Drosophila melanogaster	TTAATKR	YMATTAA	Misc Kulakovskiy et al.(2009) Ubx	0.616	0.649
Ubx M10788_2.00	Drosophila melanogaster	NNVNNNNTAATKRNBHNND	HNNDVNYMATTANNNNBNN	Transfac Matys et al.(2006) I$UBX_01	0.616	0.649
HOXA6 M04975_2.00	Homo sapiens	NNTAATKRBN	NVYMATTANN	SELEX Yin et al.(2017) HOXA6_eDBD_Methyl-HT-SELEX_1	0.616	0.649
HOXA6 M04976_2.00	Homo sapiens	NTAAYGRY	RYCRTTAN	SELEX Yin et al.(2017) HOXA6_eDBD_Methyl-HT-SELEX_2	0.616	0.649
Hoxc6 M00392_2.00	Mus musculus	TTAATTAB	VTAATTAA	PBM Berger et al.(2008) Hoxc6_3954	0.616	0.632
abd-A M03770_2.00	Drosophila melanogaster	NNTAATKRCN	NGYMATTANN	SELEX Nitta et al.(2015) abd-A_1	0.616	0.632
abd-A M03771_2.00	Drosophila melanogaster	NNTAATKRCN	NGYMATTANN	SELEX Nitta et al.(2015) abd-A_2	0.616	0.632
abd-A M06475_2.00	Drosophila melanogaster	TTAATKA	TMATTAA	B1H Mathelier et al.(2014) MA0206.1	0.616	0.632
abd-A M06210_2.00	Drosophila melanogaster	WTWATKDM	KHMATWAW	B1H Zhu et al.(2011) Abd-A_FlyReg_FBgn0000014	0.616	0.632
abd-A M09671_2.00	Drosophila melanogaster	HTAATKRH	DYMATTAD	Misc Kulakovskiy et al.(2009) abd-A	0.616	0.632
abd-A M10778_2.00	Drosophila melanogaster	Transfac license required	Transfac license required	Transfac Matys et al.(2006) I$ABDA_Q6	0.616	0.632
Q8I9J5_9BILA M02214_2.00	Spadella cephaloptera	NVTAWTWABN	NVTWAWTABN	PBM Weirauch et al.(2014) pTH6164	0.616	0.509
Hoxc8 M00391_2.00	Mus musculus	NNDNYNNNN	NNNNRNHNN	PBM Berger et al.(2008) Hoxc8_3429	0.615	0.649
Hoxb8 M00517_2.00	Mus musculus	NWWAYNDNN	NNHNRTWWN	PBM Berger et al.(2008) Hoxb8_3780	0.615	0.649
HOXB8 M05048_2.00	Homo sapiens	NTAATKRM	KYMATTAN	SELEX Yin et al.(2017) HOXB8_eDBD_HT-SELEX	0.615	0.649
HOXC8 M04912_2.00	Homo sapiens	NYAATTRN	NYAATTRN	SELEX Yin et al.(2017) HOXC8_FL_HT-SELEX	0.615	0.649
HOXB8 M09141_2.00	Homo sapiens	BMATHAATCAA	TTGATTDATKV	Misc Kulakovskiy et al.(2013) HXB8_HUMAN.H11MO.0.C	0.615	0.649
Hoxb8 M09214_2.00	Mus musculus	BMATHAATCAA	TTGATTDATKV	Misc Kulakovskiy et al.(2013) HXB8_MOUSE.H11MO.0.C	0.615	0.649
HOXC8 M10636_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HOXC8_Q3	0.615	0.649
HOXB8 M05049_2.00	Homo sapiens	NTAATKRN	NYMATTAN	SELEX Yin et al.(2017) HOXB8_eDBD_Methyl-HT-SELEX_1	0.615	0.649
HOXB8 M05050_2.00	Homo sapiens	NTAAYGAY	RTCRTTAN	SELEX Yin et al.(2017) HOXB8_eDBD_Methyl-HT-SELEX_2	0.615	0.649
HOXC8 M04913_2.00	Homo sapiens	NYMATKRN	NYMATKRN	SELEX Yin et al.(2017) HOXC8_FL_Methyl-HT-SELEX_1	0.615	0.649
HOXC8 M04914_2.00	Homo sapiens	NTWAYGRY	RYCRTWAN	SELEX Yin et al.(2017) HOXC8_FL_Methyl-HT-SELEX_2	0.615	0.649
egl-5 M09581_2.00	Caenorhabditis elegans	DWTTWATGGS	SCCATWAAWH	Misc Heinz et al.(2010) cElegans-L3-EGL5_modEncode	0.602	0.561
CBG00023 M02062_2.00	Caenorhabditis briggsae	NWWATKDNNN	NNNHMATWWN	PBM Weirauch et al.(2014) pTH5778	0.602	0.544
For this family, TFs with SR scores > 0.599* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
TTRE_0000023201	Homeodomain	236	292	RKKRKPYTKYQTLELEKEFLYNAYVSKQKRWELARSLALTERQVKIWFQNRRMKQKK

Links
Other Homeodomain family TFs
Other *Trichuris trichiura* TFs

1458 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
MCYG_08710	Arthroderma otae	MCYG_08710	N	0.000
gw1.00643.3.1	Aspergillus carbonarius	gw1.00643.3.1	N	0.000
CADANGAG00012569	Aspergillus niger	CADANGAG00012569	N	0.000
ATEG_05422	Aspergillus terreus	CADATEAG00005474	N	0.000
CH063_13189	Colletotrichum higginsianum	CH063_13189	N	0.000
PV11_03193	Exophiala sideris	PV11_03193	N	0.000
LEMA_P117550.1	Leptosphaeria maculans	LEMA_P117550.1	N	0.000
MGU_03696	Metarhizium guizhouense	MGU_03696	N	0.000
MAJ_10042	Metarhizium majus	MAJ_10042	N	0.000
MCYG_08710	Microsporum canis	MCYG_08710	N	0.000
estExt_fgenesh2_pg.C_30642	Neurospora discreta	estExt_fgenesh2_pg.C_30642	N	0.000
OIDMADRAFT_137459	Oidiodendron maius	OIDMADRAFT_137459	N	0.000
S40285_03647	Stachybotrys chlorohalonata	S40285_03647	N	0.000

TTRE_0000023201 (Trichuris trichiura) Homeodomain

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1458 Related TFs

TTRE_0000023201 **(Trichuris trichiura)
Homeodomain**