CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

POPTR_0001s08990 *(Populus trichocarpa)* HSF
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00447 (HSF_DNA-bind)	IPR000232	POPTR_0001s08990	T241840_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
HSFB2B M06945_2.00	Arabidopsis thaliana	RGAANNTTCTAGAA	TTCTAGAANNTTCY	Dap-seq OMalley et al.(2016) HSF7_col_a	0.558	0.920
HSFB2B M06946_2.00	Arabidopsis thaliana	RGAANNTTCTAGAA	TTCTAGAANNTTCY	Dap-seq OMalley et al.(2016) HSF7_colamp_a	0.558	0.920
HSFB2A M00869_2.00	Arabidopsis thaliana	NNNNNTTCB	VGAANNNNN	PBM Franco-Zorrilla et al.(2014) HSFB2A	0.482	0.805
HSFB2A M06952_2.00	Arabidopsis thaliana	GAANNTTCYAGA	TCTRGAANNTTC	Dap-seq OMalley et al.(2016) HSF6_col_a	0.482	0.805
HSFB4 M06936_2.00	Arabidopsis thaliana	RGAASNTTCTAGAAN	NTTCTAGAANSTTCY	Dap-seq OMalley et al.(2016) HSFB4_col_a	0.467	0.805
HSFB3 M06937_2.00	Arabidopsis thaliana	RRAANMWTCTAGAAV	BTTCTAGAWKNTTYY	Dap-seq OMalley et al.(2016) HSFB3_col_a	0.443	0.667
HSFB3 M06938_2.00	Arabidopsis thaliana	AABSTTCTAGAAN	NTTCTAGAASVTT	Dap-seq OMalley et al.(2016) HSFB3_colamp_a	0.443	0.667
HSFA4A M06947_2.00	Arabidopsis thaliana	NNNRGAABBTTCTAGAANN	NNTTCTAGAAVVTTCYNNN	Dap-seq OMalley et al.(2016) HSF21_col_a	0.412	0.655
HSFC1 M00868_2.00	Arabidopsis thaliana	NDTCBNNN	NNNVGAHN	PBM Franco-Zorrilla et al.(2014) HSFC1	0.409	0.655
HSFC1 M06943_2.00	Arabidopsis thaliana	GAASNTTCTAG	CTAGAANSTTC	Dap-seq OMalley et al.(2016) HSFC1_col_a	0.409	0.655
HSFC1 M06944_2.00	Arabidopsis thaliana	RGAASNTTCTAGAANVW	WBNTTCTAGAANSTTCY	Dap-seq OMalley et al.(2016) HSFC1_colamp_a	0.409	0.655
HSFA1E M06939_2.00	Arabidopsis thaliana	RGAANNTTCTAGA	TCTAGAANNTTCY	Dap-seq OMalley et al.(2016) HSFA1E_col_a	0.401	0.678
HSFA1E M06940_2.00	Arabidopsis thaliana	RGAASNTTCTAGAAN	NTTCTAGAANSTTCY	Dap-seq OMalley et al.(2016) HSFA1E_colamp_a	0.401	0.678
HSFA6B M06941_2.00	Arabidopsis thaliana	RGAASNTTCTAGA	TCTAGAANSTTCY	Dap-seq OMalley et al.(2016) HSFA6B_colamp_a	0.382	0.667
HSFA6B M06942_2.00	Arabidopsis thaliana	RGAABNTTCTRGAAN	NTTCYAGAANVTTCY	Dap-seq OMalley et al.(2016) HSFA6B_col	0.382	0.667
HSFA1B M06948_2.00	Arabidopsis thaliana	GAANNTTCTAGA	TCTAGAANNTTC	Dap-seq OMalley et al.(2016) HSF3_col_a	0.380	0.667
HSFA1B M06949_2.00	Arabidopsis thaliana	TTCYRG	CYRGAA	Dap-seq OMalley et al.(2016) HSF3_colamp_a	0.380	0.667
HSFA6A M06950_2.00	Arabidopsis thaliana	GAASNTTCTAGAANNW	WNNTTCTAGAANSTTC	Dap-seq OMalley et al.(2016) HSFA6A_col_a	0.375	0.609
HSFA6A M06951_2.00	Arabidopsis thaliana	GAASNTTCTAGAA	TTCTAGAANSTTC	Dap-seq OMalley et al.(2016) HSFA6A_colamp_a	0.375	0.609
HSF1 M03329_2.00	Homo sapiens	GAANVTTCBVGAA	TTCBVGAABNTTC	SELEX Jolma et al.(2013) HSF1_1	0.351	0.575
HSF1 M03330_2.00	Homo sapiens	GAANRTTCBAGAA	TTCTVGAAYNTTC	SELEX Jolma et al.(2013) HSF1_2	0.351	0.575
HSF1 M05523_2.00	Homo sapiens	VGAABVTTCBVGAWN	NWTCBVGAABVTTCB	SELEX Yin et al.(2017) HSF1_eDBD_HT-SELEX	0.351	0.575
HSF1 M05525_2.00	Homo sapiens	VGAANRTTCKVGAAN	NTTCBMGAAYNTTCB	SELEX Yin et al.(2017) HSF1_FL_HT-SELEX	0.351	0.575
HSF1 M07977_2.00	Homo sapiens	GDCSYGGGTTCRADYCCC	GGGRHTYGAACCCRSGHC	ChIP-seq Gerstein et al.(2012) HepG2_HSF1_Stanford	0.351	0.575
HSF1 M09230_2.00	Homo sapiens	NRGAANNTTCYRGAA	TTCYRGAANNTTCYN	Misc Kulakovskiy et al.(2013) HSF1_HUMAN.H11MO.0.A	0.351	0.575
Hsf1 M09232_2.00	Mus musculus	NRGAANNTTCYRGAA	TTCYRGAANNTTCYN	Misc Kulakovskiy et al.(2013) HSF1_MOUSE.H11MO.0.A	0.351	0.575
HSF1 M09592_2.00	Homo sapiens	NNBBCYRGAANNTTCYRGVV	BBCYRGAANNTTCYRGVVNN	Misc Heinz et al.(2010) HepG2-HSF1_GSE31477	0.351	0.575
Hsf1 M09593_2.00	Mus musculus	NRGAANNTTCYRGAA	TTCYRGAANNTTCYN	Misc Heinz et al.(2010) Striatum-HSF1_GSE38000	0.351	0.575
HSF1 M10863_2.00	Homo sapiens	NGAAHNTTCY	RGAANDTTCN	Transfac Matys et al.(2006) V$HSF1_01	0.351	0.575
HSF1 M10864_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HSF1_Q5_01	0.351	0.575
HSF1 M10865_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HSF1_Q5	0.351	0.575
HSF1 M10866_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HSF1_Q6_01	0.351	0.575
HSF1 M10867_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HSF1_Q6	0.351	0.575
HSF1 M10868_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HSF_Q6	0.351	0.575
HSF1 M05524_2.00	Homo sapiens	RGAANRTTCYRGAWN	NWTCYRGAAYNTTCY	SELEX Yin et al.(2017) HSF1_eDBD_Methyl-HT-SELEX	0.351	0.575
HSF1 M05526_2.00	Homo sapiens	RGAANVTTCYRGAWN	NWTCYRGAABNTTCY	SELEX Yin et al.(2017) HSF1_FL_Methyl-HT-SELEX	0.351	0.575
For this family, TFs with SR scores > 0.318* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
POPTR_0001s08990.1	HSF	40	130	FLTKTYQLVDDPSVDDLISWNDDGSTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFANDCFRRGEKALLRDIQRRK

Links
Other HSF family TFs
Other *Populus trichocarpa* TFs

1495 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
nAv.1.0.1.g02191	Acanthocheilonema viteae	nAv.1.0.1.g02191	N	0.000
ANCCAN_15383	Ancylostoma caninum	ANCCAN_15383	N	0.000
ANCCEY_04433	Ancylostoma ceylanicum	ANCCEY_04433	N	0.000
ACOC_0000329601	Angiostrongylus costaricensis	ACOC_0000329601	N	0.000
ASIM_0001160201	Anisakis simplex	ASIM_0001160201	N	0.000
ALUE_0001180601	Ascaris lumbricoides	ALUE_0001180601	N	0.000
Bm4813	Brugia malayi	Bm4813	N	0.000
CGOC_0000927301	Cylicostephanus goldi	CGOC_0000927301	N	0.000
nDi.2.2.2.g02408	Dirofilaria immitis	nDi.2.2.2.g02408	N	0.000
DME_0000413601	Dracunculus medinensis	DME_0000413601	N	0.000
EEL_0000340601	Elaeophora elaphi	EEL_0000340601	N	0.000
EVEC_0001249101	Enterobius vermicularis	EVEC_0001249101	N	0.000
GPUH_0002215801	Gongylonema pulchrum	GPUH_0002215801	N	0.000
HCOI00202100	Haemonchus contortus	HCOI00202100	N	0.000
HPLM_0000008901	Haemonchus placei	HPLM_0000008901	N	0.000
HPLM_0001566201	Haemonchus placei	HPLM_0001566201	N	0.000
Hba_00636	Heterorhabditis bacteriophora	Hba_00636	N	0.000
nLs.2.1.2.g00583	Litomosoides sigmodontis	nLs.2.1.2.g00583	N	0.000
LOAG_06215	Loa loa	LOAG_06215	N	0.000
NECAME_03414	Necator americanus	NECAME_03414	N	0.000
OESDEN_04377	Oesophagostomum dentatum	OESDEN_04377	N	0.000
OFLC_0001358201	Onchocerca flexuosa	OFLC_0001358201	N	0.000
nOo.2.0.1.g01013	Onchocerca ochengi	nOo.2.0.1.g01013	N	0.000
WBGene00237735	Onchocerca volvulus	WBGene00237735	N	0.000
PTRK_0000540400	Parastrongyloides trichosuri	PTRK_0000540400	N	0.000
scaffold1561-EXSNAP2012.3	Pristionchus exspectatus	scaffold1561-EXSNAP2012.3	N	0.000
PPA09670	Pristionchus pacificus	PPA09670	N	0.000
RSKR_0000949900	Rhabditophanes kr3021	RSKR_0000949900	N	0.000
nRc.2.0.1.g25601	Romanomermis culicivorax	nRc.2.0.1.g25601	N	0.000
L596_g21980	Steinernema carpocapsae	L596_g21980	N	0.000
L889_g15502	Steinernema feltiae	L889_g15502	N	0.000
L893_g2345	Steinernema glaseri	L893_g2345	N	0.000
L898_g30040	Steinernema monticolum	L898_g30040	N	0.000
L892_g11079	Steinernema scapterisci	L892_g11079	N	0.000
SSTP_0000398400	Strongyloides stercoralis	SSTP_0000398400	N	0.000
SVE_0387200	Strongyloides venezuelensis	SVE_0387200	N	0.000
SVUK_0000871301	Strongylus vulgaris	SVUK_0000871301	N	0.000
TELCIR_05319	Teladorsagia circumcincta	TELCIR_05319	N	0.000
TCLT_0000451401	Thelazia callipaeda	TCLT_0000451401	N	0.000
TCNE_0001236501	Toxocara canis	TCNE_0001236501	N	0.000
D917_05194	Trichinella nativa	D917_05194	N	0.000
D918_01735	Trichuris suis	D918_01735	N	0.000
WUBG_10166	Wuchereria bancrofti	WUBG_10166	N	0.000

POPTR_0001s08990 (Populus trichocarpa) HSF

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1495 Related TFs

POPTR_0001s08990 **(Populus trichocarpa)
HSF**