CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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GRMZM2G180190
(
Zea mays
)
Leafy
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF01698 (FLO_LFY)
IPR002910
GRMZM2G180190
T244706_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
LFY
M02692_2.00
Arabidopsis thaliana
YWTKRACCRSYGGTYMAWR
YWTKRACCRSYGGTYMAWR
SELEX
Mathelier et al.(2014)
MA0590.1
0.815
0.815
LFY
M10895_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$LFY_Q2
0.815
0.815
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
GRMZM2G180190_P01
Leafy
1
382
MDPNDAFSAAHPFRWDLGPPAPAAPAPPPPPPPAPQLLPHAPLLSAPRELEDLVAGYGVRPSTVARISELGFTASTLLGMTERELDDMMAALAGLFRWDVLLGERFGLRAALRAERGRVMSLGGRFHTGSTLDAASQEVLSDERDAAASGGLAEGEAGRRMVTAGKKKGKKGVGARKGKKARRKKELRPLDVLDDENDGDEDGGGGGSDSTESSAGGSGGGERQREHPFVVTEPGEVARAKKNGLDYLFHLYEQCRVFLLQVQSLAKLGGHKSPTKVTNQVFRYAKKCGASYINKPKMRHYVHCYALHCLDEEASNALRRAYKARGENVGAWRQACYAPLVEIAARHGFDIDAVFSAHPRLTIWYVPTRLRQLCHQARGSHA
Links
Other
Leafy
family TFs
Other
Zea mays
TFs
60 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
BRADI2G14372
Brachypodium distachyon
BRADI2G14372
N
MLOC_60761
Hordeum vulgare
MLOC_60761
N
OBART05G28000
Oryza barthii
OBART05G28000
N
OGLUM05G29460
Oryza glumaepatula
OGLUM05G29460
N
BGIOSGA017449
Oryza indica
BGIOSGA017449
N
OLONG_007975
Oryza longistaminata
OLONG_007975
N
OMERI05G23880
Oryza meridionalis
OMERI05G23880
N
ONIVA05G29890
Oryza nivara
ONIVA05G29890
N
OPUNC05G25580
Oryza punctata
OPUNC05G25580
N
OPUNC05G25600
Oryza punctata
OPUNC05G25600
N
ORUFI05G29980
Oryza rufipogon
ORUFI05G29980
N
Pavir.J00429
Panicum virgatum
Pavir.J00429
N
Pavir.J03231
Panicum virgatum
Pavir.J03231
N
Si020947m.g
Setaria italica
Si020947m.g
N
Traes_1DL_7773A9BFB
Triticum aestivum
Traes_1DL_7773A9BFB
N
Traes_3AL_06889C77D
Triticum aestivum
Traes_3AL_06889C77D
N
Traes_3DL_FC1A52B36
Triticum aestivum
Traes_3DL_FC1A52B36
N
TRIUR3_17785
Triticum urartu
TRIUR3_17785
N
GRMZM2G350684
Zea mays
GRMZM2G350684
N
GRMZM2G018048
Zea mays
GRMZM2G018048
N